Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47016 * 269.99535 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99989 * 3 2 1 6 6 H 1.48508 * 109.47117 * 150.00090 * 3 2 1 7 7 C 1.37884 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47402 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47293 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54189 * 68.37430 * 12 11 10 14 14 O 1.42099 * 110.54203 * 291.62169 * 12 11 10 15 15 N 1.65608 * 104.44917 * 179.97438 * 12 11 10 16 16 C 1.47069 * 136.05426 * 89.99784 * 15 12 11 17 17 C 1.53495 * 87.98211 * 207.08836 * 16 15 12 18 18 C 1.47061 * 136.05749 * 269.63087 * 15 12 11 19 19 H 1.08998 * 113.46753 * 267.69117 * 18 15 12 20 20 C 1.52997 * 113.47000 * 38.13598 * 18 15 12 21 21 C 1.53004 * 117.50023 * 248.62092 * 20 18 15 22 22 C 1.52995 * 59.99872 * 252.50959 * 21 20 18 23 23 H 0.97004 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47291 * 60.00239 * 9 7 2 25 25 H 1.09001 * 109.47238 * 300.00056 * 9 7 2 26 26 H 1.09001 * 109.47713 * 59.99658 * 10 9 7 27 27 H 1.09001 * 109.46817 * 299.99882 * 10 9 7 28 28 H 1.09001 * 109.47069 * 59.99138 * 11 10 9 29 29 H 1.09001 * 109.46935 * 299.99683 * 11 10 9 30 30 H 1.09000 * 113.46809 * 321.86681 * 16 15 12 31 31 H 1.09001 * 113.46340 * 92.31137 * 16 15 12 32 32 H 1.08993 * 114.20720 * 87.52341 * 17 16 15 33 33 H 1.09001 * 114.20142 * 220.34855 * 17 16 15 34 34 H 1.09000 * 115.54934 * 34.32619 * 20 18 15 35 35 H 1.09003 * 117.49419 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.50086 * 145.01169 * 21 20 18 37 37 H 1.09003 * 117.49710 * 252.50715 * 22 21 20 38 38 H 1.08993 * 117.50082 * 107.49008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3549 -6.4263 1.2395 14 8 3.3566 -6.4262 -1.2346 15 7 1.7086 -7.7221 0.0019 16 6 1.1013 -8.5895 -1.0188 17 6 0.0073 -8.9327 0.0017 18 6 1.1059 -8.5928 1.0223 19 1 1.7299 -9.4459 1.2885 20 6 0.5900 -7.8317 2.2452 21 6 1.3307 -8.0353 3.5684 22 6 -0.0559 -8.6493 3.3655 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 0.8545 -5.0449 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 0.7298 -8.0443 -1.8865 31 1 1.7242 -9.4417 -1.2905 32 1 -0.8363 -8.2425 0.0017 33 1 -0.2908 -9.9811 0.0016 34 1 0.1806 -6.8416 2.0444 35 1 2.1858 -8.7113 3.5675 36 1 1.4089 -7.1791 4.2383 37 1 -0.8900 -8.1971 3.9020 38 1 -0.1133 -9.7295 3.2314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475317814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -48.783669 kcal Electronic energy + Delta-G solvation = -19373.304532 eV Core-core repulsion = 16343.637680 eV Total energy + Delta-G solvation = -3029.666852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65406 -38.21677 -37.17288 -37.07397 -36.52025 -34.20800 -29.78097 -29.50528 -27.37130 -25.66680 -23.19671 -22.68173 -22.25179 -21.54051 -19.83632 -18.82605 -18.48039 -17.45899 -17.24277 -16.55285 -16.32738 -16.09595 -15.82209 -14.89430 -14.61044 -14.51627 -14.23754 -14.09061 -13.58313 -13.26743 -13.18958 -13.11705 -13.03539 -12.91647 -12.78271 -12.66743 -12.32569 -12.17976 -11.92271 -11.81582 -11.77535 -11.42785 -11.26796 -11.08376 -10.73608 -10.60684 -9.99416 -8.25636 -6.37194 -0.83390 1.38300 1.39315 1.50787 1.62602 2.37659 2.77985 2.87879 3.00609 3.07804 3.60651 3.65393 3.72630 3.80694 3.91683 4.09771 4.17917 4.28820 4.34133 4.41996 4.53984 4.71273 4.73984 4.86059 4.86590 4.98446 5.04632 5.08242 5.10721 5.22889 5.32042 5.38302 5.40163 5.56791 5.66561 5.74986 6.15686 6.77658 7.32306 8.86016 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004343 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.174991 B = 6445.890557 C = 6824.387006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.602 4.602 12 S 2.642 3.358 13 O -0.982 6.982 14 O -0.995 6.995 15 N -1.050 6.050 16 C 0.114 3.886 17 C -0.126 4.126 18 C 0.183 3.817 19 H 0.104 0.896 20 C -0.197 4.197 21 C -0.191 4.191 22 C -0.136 4.136 23 H 0.266 0.734 24 H 0.003 0.997 25 H 0.002 0.998 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -22.222 2.362 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.733 4.733 12 S 2.741 3.259 13 O -0.973 6.973 14 O -0.985 6.985 15 N -0.891 5.891 16 C -0.010 4.010 17 C -0.165 4.165 18 C 0.078 3.922 19 H 0.122 0.878 20 C -0.217 4.217 21 C -0.228 4.228 22 C -0.174 4.174 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.045 -21.923 2.343 22.142 hybrid contribution -0.085 1.692 0.018 1.694 sum -2.130 -20.231 2.362 20.479 Atomic orbital electron populations 1.70071 1.07656 1.27984 1.51206 1.25939 0.95825 1.03245 0.94401 0.85459 0.78673 0.78376 0.78648 1.19596 1.20346 1.18963 1.21719 0.93702 0.92483 1.51367 0.92248 1.18938 0.93912 0.91762 0.95879 1.21321 0.98744 0.92559 1.01884 1.30534 1.16551 1.13664 1.12564 1.03754 0.74646 0.74859 0.72672 1.93512 1.71096 1.86359 1.46333 1.93503 1.71254 1.86659 1.47112 1.60136 1.70215 1.39589 1.19137 1.22755 0.93094 0.92806 0.92342 1.23587 0.95672 1.04567 0.92689 1.22007 0.92804 0.90093 0.87255 0.87842 1.22697 1.06738 1.01526 0.90708 1.23010 0.96819 1.03764 0.99180 1.22961 0.95345 1.00421 0.98642 0.92540 0.97847 0.97938 0.91729 0.91699 0.83959 0.84277 0.89790 0.88420 0.88178 0.86373 0.88541 0.88554 0.89769 0.87803 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.77 4.97 29.85 0.15 1.92 16 10 C -0.11 -4.55 5.16 30.59 0.16 -4.40 16 11 C -0.60 -19.84 6.18 71.98 0.44 -19.40 16 12 S 2.64 85.16 5.85 -56.49 -0.33 84.83 16 13 O -0.98 -36.98 18.07 -127.65 -2.31 -39.29 16 14 O -0.99 -37.98 18.07 -127.65 -2.31 -40.29 16 15 N -1.05 -24.15 3.93 -526.43 -2.07 -26.21 16 16 C 0.11 1.75 8.68 83.18 0.72 2.47 16 17 C -0.13 -1.34 8.04 31.02 0.25 -1.09 16 18 C 0.18 3.15 4.15 41.88 0.17 3.32 16 19 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 20 C -0.20 -3.80 5.62 -10.79 -0.06 -3.86 16 21 C -0.19 -3.86 10.24 30.59 0.31 -3.54 16 22 C -0.14 -1.89 10.25 30.59 0.31 -1.57 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 26 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 29 H 0.14 4.16 7.53 -2.39 -0.02 4.14 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 2.08 7.53 -2.39 -0.02 2.06 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.28 332.99 -0.52 -76.80 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.02 Total: 10.89 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 3.16 Total: -57.46 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.78 Total: -82.18 kcal Atomic # 8 Polarization: -74.96 SS G_CDS: -4.61 Total: -79.57 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 85.16 SS G_CDS: -0.33 Total: 84.83 kcal Total: -76.28 -0.52 -76.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475317814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.016 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds