Wall clock time and date at job start Mon Mar 30 2020 01:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47101 * 325.36921 * 3 2 1 5 5 C 1.37087 * 120.00140 * 264.08970 * 4 3 2 6 6 H 1.08005 * 120.00375 * 198.06271 * 5 4 3 7 7 C 1.38951 * 120.00041 * 18.06366 * 5 4 3 8 8 N 1.31408 * 119.99881 * 21.01930 * 7 5 4 9 9 Si 1.86805 * 120.00058 * 201.01921 * 7 5 4 10 10 H 1.48501 * 109.46781 * 90.00001 * 9 7 5 11 11 H 1.48502 * 109.47049 * 210.00075 * 9 7 5 12 12 H 1.48503 * 109.47011 * 330.00137 * 9 7 5 13 13 C 1.34776 * 119.99772 * 84.09141 * 4 3 2 14 14 O 1.21294 * 120.00095 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99946 * 179.97438 * 13 4 3 16 16 C 1.50702 * 109.46886 * 180.02562 * 15 13 4 17 17 C 1.38287 * 119.94403 * 264.99671 * 16 15 13 18 18 C 1.38122 * 120.05619 * 180.02562 * 17 16 15 19 19 C 1.38750 * 119.94426 * 359.97438 * 18 17 16 20 20 O 1.35899 * 120.05336 * 180.02562 * 19 18 17 21 21 C 1.38713 * 119.88909 * 0.27703 * 19 18 17 22 22 C 1.38168 * 119.94077 * 359.49109 * 21 19 18 23 23 C 1.50696 * 119.96790 * 180.23062 * 22 21 19 24 24 H 4.40641 * 5.51410 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46931 * 205.37143 * 3 2 1 26 26 H 1.09003 * 109.47246 * 85.37296 * 3 2 1 27 27 H 0.97003 * 119.99943 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46795 * 60.00192 * 15 13 4 29 29 H 1.08998 * 109.47126 * 299.99936 * 15 13 4 30 30 H 1.08005 * 119.97532 * 0.02562 * 17 16 15 31 31 H 1.08006 * 120.02876 * 179.97438 * 18 17 16 32 32 H 0.96703 * 114.00016 * 90.00308 * 20 19 18 33 33 H 1.07999 * 120.02840 * 179.72446 * 21 19 18 34 34 H 1.08995 * 109.47145 * 270.25285 * 23 22 21 35 35 H 1.09003 * 109.47392 * 30.25851 * 23 22 21 36 36 H 1.09006 * 109.46957 * 150.25882 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1357 0.7849 5 6 3.4785 -0.9627 2.1007 6 1 4.0998 -1.6934 2.5972 7 6 3.0276 0.1529 2.7957 8 7 1.9744 0.8121 2.3678 9 14 3.9186 0.7155 4.3381 10 1 4.9828 1.6835 3.9697 11 1 2.9523 1.3684 5.2576 12 1 4.5289 -0.4580 5.0132 13 6 3.2467 -2.3511 0.2134 14 8 2.9422 -2.5043 -0.9507 15 6 3.7501 -3.5199 1.0206 16 6 3.7807 -4.7527 0.1544 17 6 2.7117 -5.6299 0.1643 18 6 2.7375 -6.7608 -0.6284 19 6 3.8369 -7.0160 -1.4354 20 8 3.8644 -8.1277 -2.2165 21 6 4.9101 -6.1372 -1.4396 22 6 4.8774 -5.0049 -0.6485 23 6 6.0408 -4.0471 -0.6565 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.9294 0.4404 26 1 3.0094 -0.0821 -1.0243 27 1 1.6594 1.5906 2.8532 28 1 3.0868 -3.6879 1.8692 29 1 4.7557 -3.3054 1.3823 30 1 1.8559 -5.4307 0.7923 31 1 1.9025 -7.4458 -0.6200 32 1 3.4946 -7.9966 -3.1004 33 1 5.7690 -6.3359 -2.0636 34 1 6.7603 -4.3430 0.1068 35 1 6.5206 -4.0663 -1.6351 36 1 5.6829 -3.0390 -0.4472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520153513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:28 Heat of formation + Delta-G solvation = 7.514807 kcal Electronic energy + Delta-G solvation = -20561.400473 eV Core-core repulsion = 17398.730955 eV Total energy + Delta-G solvation = -3162.669518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81157 -38.53545 -36.79508 -35.03083 -32.36349 -32.03614 -31.62351 -31.03162 -27.65669 -26.67693 -25.63555 -24.32868 -21.94400 -20.92280 -19.18643 -17.82923 -17.74784 -16.62030 -16.17028 -15.85202 -15.40089 -14.81491 -14.44192 -14.21102 -14.06203 -13.44252 -13.19805 -12.93335 -12.77760 -12.59863 -12.13849 -11.94932 -11.63154 -11.56642 -11.38838 -11.11713 -10.96423 -10.88911 -10.53071 -10.47760 -10.20971 -9.38204 -9.33349 -8.74359 -8.59034 -8.45703 -7.99626 -7.93713 -6.42610 -4.00499 1.54343 1.66111 3.06274 3.17384 3.18975 3.67939 3.84136 3.98632 4.11211 4.27310 4.42972 4.91782 5.02981 5.10653 5.17082 5.32394 5.56186 5.63327 5.68141 5.83064 5.89415 6.04021 6.10475 6.17600 6.23302 6.36980 6.47057 6.64508 6.67362 6.70500 6.84193 7.03305 7.13037 7.16655 7.33615 7.63302 7.80700 8.25938 8.97315 8.99816 9.40021 9.81710 10.56800 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.005142 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.950953 B = 5443.881443 C = 5993.697551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.098 4.098 3 C 0.243 3.757 4 N -0.440 5.440 5 C -0.348 4.348 6 H 0.101 0.899 7 C 0.039 3.961 8 N -0.849 5.849 9 Si 0.917 3.083 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.465 3.535 14 O -0.595 6.595 15 C -0.087 4.087 16 C -0.051 4.051 17 C -0.090 4.090 18 C -0.151 4.151 19 C 0.090 3.910 20 O -0.504 6.504 21 C -0.146 4.146 22 C -0.055 4.055 23 C -0.116 4.116 24 H 0.197 0.803 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.385 0.615 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -7.677 -3.234 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.100 4.100 3 C 0.120 3.880 4 N -0.158 5.158 5 C -0.475 4.475 6 H 0.119 0.881 7 C -0.167 4.167 8 N -0.485 5.485 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.254 3.746 14 O -0.481 6.481 15 C -0.127 4.127 16 C -0.052 4.052 17 C -0.109 4.109 18 C -0.169 4.169 19 C 0.046 3.954 20 O -0.313 6.313 21 C -0.165 4.165 22 C -0.055 4.055 23 C -0.172 4.172 24 H 0.214 0.786 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.240 0.760 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.120 -7.805 -3.232 9.399 hybrid contribution -0.307 0.617 0.618 0.925 sum 3.813 -7.188 -2.615 8.547 Atomic orbital electron populations 1.24174 0.95324 1.03472 1.06316 1.23141 0.94354 0.97380 0.95118 1.18034 0.84223 0.91508 0.94227 1.43693 1.55922 1.05647 1.10540 1.19610 1.31339 1.10017 0.86566 0.88101 1.25283 0.94796 0.97543 0.99123 1.70118 1.18932 1.19199 1.40285 0.86089 0.79244 0.79252 0.81055 1.20220 1.21033 1.19391 1.19971 0.83277 0.83499 0.87855 1.90571 1.55635 1.84053 1.17825 1.20502 1.03371 0.91025 0.97783 1.19492 0.93499 0.95281 0.96916 1.20888 0.97769 0.93457 0.98746 1.21250 0.98022 0.98276 0.99362 1.18344 0.94212 0.87367 0.95455 1.84793 1.85157 1.32705 1.28688 1.21140 0.99139 0.94353 1.01858 1.19565 0.95986 0.94660 0.95290 1.20824 0.95455 0.99003 1.01939 0.78597 0.87881 0.91639 0.91902 0.88852 0.88997 0.85837 0.85996 0.76039 0.85992 0.91309 0.91832 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.27 19.25 29.55 0.57 -5.70 16 2 C -0.10 -2.43 11.52 -37.12 -0.43 -2.86 16 3 C 0.24 5.82 5.06 -6.83 -0.03 5.79 16 4 N -0.44 -10.67 2.60 -117.93 -0.31 -10.98 16 5 C -0.35 -8.35 9.12 -14.94 -0.14 -8.48 16 6 H 0.10 2.25 6.57 -52.48 -0.34 1.91 16 7 C 0.04 0.94 4.87 -17.47 -0.09 0.86 16 8 N -0.85 -21.50 9.47 55.50 0.53 -20.97 16 9 Si 0.92 18.60 29.60 -169.99 -5.03 13.57 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 13 C 0.47 10.82 6.78 -10.99 -0.07 10.74 16 14 O -0.60 -15.29 15.71 5.55 0.09 -15.20 16 15 C -0.09 -1.67 3.61 -29.03 -0.10 -1.77 16 16 C -0.05 -0.93 4.37 -104.60 -0.46 -1.39 16 17 C -0.09 -1.53 9.67 -39.61 -0.38 -1.92 16 18 C -0.15 -2.32 9.99 -39.43 -0.39 -2.71 16 19 C 0.09 1.36 6.70 -39.22 -0.26 1.10 16 20 O -0.50 -6.51 13.50 -19.42 -0.26 -6.77 16 21 C -0.15 -2.24 9.64 -39.43 -0.38 -2.62 16 22 C -0.05 -0.91 5.88 -104.65 -0.62 -1.53 16 23 C -0.12 -1.71 9.21 36.00 0.33 -1.37 16 24 H 0.20 3.68 7.80 -54.10 -0.42 3.26 16 25 H 0.10 2.49 6.47 -51.93 -0.34 2.15 16 26 H 0.07 1.51 7.61 -51.93 -0.40 1.11 16 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.09 1.75 8.01 -51.93 -0.42 1.34 16 29 H 0.09 1.61 6.52 -51.93 -0.34 1.27 16 30 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.38 3.17 9.06 45.56 0.41 3.58 16 33 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.08 1.27 6.15 -51.93 -0.32 0.95 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -30.43 314.80 -6.10 -36.53 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -3.40 Total: 10.95 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.45 Total: -11.87 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.22 Total: -31.96 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.18 Total: -21.97 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.43 -6.10 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520153513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.048 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds