Wall clock time and date at job start Mon Mar 30 2020 01:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47101 * 325.36921 * 3 2 1 5 5 C 1.37087 * 120.00140 * 264.08970 * 4 3 2 6 6 H 1.08005 * 120.00375 * 198.06271 * 5 4 3 7 7 C 1.38951 * 120.00041 * 18.06366 * 5 4 3 8 8 N 1.31408 * 119.99881 * 21.01930 * 7 5 4 9 9 Si 1.86805 * 120.00058 * 201.01921 * 7 5 4 10 10 H 1.48501 * 109.46781 * 90.00001 * 9 7 5 11 11 H 1.48502 * 109.47049 * 210.00075 * 9 7 5 12 12 H 1.48503 * 109.47011 * 330.00137 * 9 7 5 13 13 C 1.34776 * 119.99772 * 84.09141 * 4 3 2 14 14 O 1.21294 * 120.00095 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99946 * 179.97438 * 13 4 3 16 16 C 1.50702 * 109.46886 * 180.02562 * 15 13 4 17 17 C 1.38287 * 119.94403 * 264.99671 * 16 15 13 18 18 C 1.38122 * 120.05619 * 180.02562 * 17 16 15 19 19 C 1.38750 * 119.94426 * 359.97438 * 18 17 16 20 20 O 1.35899 * 120.05336 * 180.02562 * 19 18 17 21 21 C 1.38713 * 119.88909 * 0.27703 * 19 18 17 22 22 C 1.38168 * 119.94077 * 359.49109 * 21 19 18 23 23 C 1.50696 * 119.96790 * 180.23062 * 22 21 19 24 24 H 4.40641 * 5.51410 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46931 * 205.37143 * 3 2 1 26 26 H 1.09003 * 109.47246 * 85.37296 * 3 2 1 27 27 H 0.97003 * 119.99943 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46795 * 60.00192 * 15 13 4 29 29 H 1.08998 * 109.47126 * 299.99936 * 15 13 4 30 30 H 1.08005 * 119.97532 * 0.02562 * 17 16 15 31 31 H 1.08006 * 120.02876 * 179.97438 * 18 17 16 32 32 H 0.96703 * 114.00016 * 90.00308 * 20 19 18 33 33 H 1.07999 * 120.02840 * 179.72446 * 21 19 18 34 34 H 1.08995 * 109.47145 * 270.25285 * 23 22 21 35 35 H 1.09003 * 109.47392 * 30.25851 * 23 22 21 36 36 H 1.09006 * 109.46957 * 150.25882 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1357 0.7849 5 6 3.4785 -0.9627 2.1007 6 1 4.0998 -1.6934 2.5972 7 6 3.0276 0.1529 2.7957 8 7 1.9744 0.8121 2.3678 9 14 3.9186 0.7155 4.3381 10 1 4.9828 1.6835 3.9697 11 1 2.9523 1.3684 5.2576 12 1 4.5289 -0.4580 5.0132 13 6 3.2467 -2.3511 0.2134 14 8 2.9422 -2.5043 -0.9507 15 6 3.7501 -3.5199 1.0206 16 6 3.7807 -4.7527 0.1544 17 6 2.7117 -5.6299 0.1643 18 6 2.7375 -6.7608 -0.6284 19 6 3.8369 -7.0160 -1.4354 20 8 3.8644 -8.1277 -2.2165 21 6 4.9101 -6.1372 -1.4396 22 6 4.8774 -5.0049 -0.6485 23 6 6.0408 -4.0471 -0.6565 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.9294 0.4404 26 1 3.0094 -0.0821 -1.0243 27 1 1.6594 1.5906 2.8532 28 1 3.0868 -3.6879 1.8692 29 1 4.7557 -3.3054 1.3823 30 1 1.8559 -5.4307 0.7923 31 1 1.9025 -7.4458 -0.6200 32 1 3.4946 -7.9966 -3.1004 33 1 5.7690 -6.3359 -2.0636 34 1 6.7603 -4.3430 0.1068 35 1 6.5206 -4.0663 -1.6351 36 1 5.6829 -3.0390 -0.4472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520153513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:27 Heat of formation + Delta-G solvation = -10.640875 kcal Electronic energy + Delta-G solvation = -20562.187763 eV Core-core repulsion = 17398.730955 eV Total energy + Delta-G solvation = -3163.456808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.16841 -40.13114 -37.99585 -36.84626 -33.88306 -33.54853 -33.32696 -32.56008 -29.14639 -28.09590 -27.21933 -26.04722 -23.19455 -22.18465 -20.94670 -19.55122 -18.87902 -18.38844 -17.93449 -17.14338 -16.71143 -16.20226 -16.10939 -15.83678 -15.68773 -14.83541 -14.52098 -14.45122 -14.09395 -13.99289 -13.81547 -13.49572 -13.33714 -12.87300 -12.77754 -12.59648 -12.53210 -12.34856 -12.10926 -11.99844 -11.33698 -11.21010 -11.19551 -10.61077 -10.35945 -9.82845 -9.69418 -9.27076 -8.25021 -5.88955 0.31976 0.44669 1.44542 1.52223 1.61646 1.90853 2.15223 2.34796 2.41897 2.65239 3.11481 3.30068 3.36128 3.88297 3.90324 3.94020 4.08834 4.33571 4.38219 4.46929 4.60899 4.75071 4.78873 4.81466 4.83850 4.92051 4.97001 5.11052 5.27879 5.39083 5.44604 5.47547 5.50353 5.77295 5.80362 5.96688 6.40632 6.88188 7.12386 7.14927 7.57579 7.98986 8.74485 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.005142 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.950953 B = 5443.881443 C = 5993.697551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.144 4.144 3 C 0.244 3.756 4 N -0.451 5.451 5 C -0.363 4.363 6 H 0.115 0.885 7 C -0.001 4.001 8 N -0.878 5.878 9 Si 0.985 3.015 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.459 3.541 14 O -0.625 6.625 15 C -0.075 4.075 16 C -0.080 4.080 17 C -0.104 4.104 18 C -0.157 4.157 19 C 0.097 3.903 20 O -0.506 6.506 21 C -0.152 4.152 22 C -0.065 4.065 23 C -0.113 4.113 24 H 0.233 0.767 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.269 0.731 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.408 0.592 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -8.933 -2.939 10.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.169 5.169 5 C -0.489 4.489 6 H 0.132 0.868 7 C -0.205 4.205 8 N -0.515 5.515 9 Si 0.810 3.190 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.181 1.181 13 C 0.250 3.750 14 O -0.513 6.513 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.122 4.122 18 C -0.175 4.175 19 C 0.052 3.948 20 O -0.318 6.318 21 C -0.170 4.170 22 C -0.065 4.065 23 C -0.170 4.170 24 H 0.250 0.750 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.266 0.734 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.780 -9.074 -2.952 10.672 hybrid contribution -0.570 0.939 0.419 1.176 sum 4.210 -8.134 -2.532 9.503 Atomic orbital electron populations 1.25094 0.96378 1.01797 1.04654 1.23569 0.95242 0.99011 0.96718 1.17940 0.84479 0.91404 0.94048 1.43922 1.56012 1.06053 1.10867 1.20001 1.31619 1.10713 0.86603 0.86784 1.26097 0.95105 0.97322 1.01958 1.70241 1.20167 1.19473 1.41598 0.85041 0.77765 0.78882 0.77352 1.19962 1.21687 1.18141 1.20657 0.82510 0.84073 0.87808 1.90528 1.56857 1.84606 1.19259 1.20385 1.03712 0.89998 0.97324 1.19527 0.94895 0.95308 0.98296 1.21038 0.97672 0.94145 0.99371 1.21475 0.98971 0.98106 0.98956 1.18442 0.93787 0.87344 0.95187 1.84734 1.85399 1.31678 1.30033 1.21391 1.00034 0.93892 1.01713 1.19818 0.96099 0.95511 0.95100 1.20830 0.95381 0.97134 1.03616 0.75019 0.88735 0.91844 0.92140 0.88916 0.87651 0.85739 0.83982 0.73377 0.83786 0.89123 0.90262 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.82 19.25 74.32 1.43 -10.38 16 2 C -0.14 -7.22 11.52 31.13 0.36 -6.86 16 3 C 0.24 12.08 5.06 84.57 0.43 12.51 16 4 N -0.45 -22.27 2.60 -645.40 -1.68 -23.95 16 5 C -0.36 -17.41 9.12 84.04 0.77 -16.65 16 6 H 0.11 5.03 6.57 -2.91 -0.02 5.01 16 7 C 0.00 -0.05 4.87 84.93 0.41 0.36 16 8 N -0.88 -44.84 9.47 21.66 0.21 -44.63 16 9 Si 0.99 37.79 29.60 68.60 2.03 39.83 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 11 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 13 C 0.46 21.72 6.78 87.66 0.59 22.31 16 14 O -0.62 -32.79 15.71 -3.07 -0.05 -32.84 16 15 C -0.07 -2.87 3.61 29.10 0.11 -2.77 16 16 C -0.08 -2.85 4.37 -19.85 -0.09 -2.94 16 17 C -0.10 -3.48 9.67 22.25 0.22 -3.26 16 18 C -0.16 -4.58 9.99 22.36 0.22 -4.35 16 19 C 0.10 2.71 6.70 22.51 0.15 2.86 16 20 O -0.51 -11.55 13.50 -92.41 -1.25 -12.80 16 21 C -0.15 -4.34 9.64 22.37 0.22 -4.13 16 22 C -0.07 -2.10 5.88 -19.88 -0.12 -2.21 16 23 C -0.11 -3.20 9.21 71.23 0.66 -2.54 16 24 H 0.23 8.25 7.80 -4.43 -0.03 8.22 16 25 H 0.09 4.74 6.47 -2.39 -0.02 4.72 16 26 H 0.06 3.06 7.61 -2.39 -0.02 3.04 16 27 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.09 3.50 8.01 -2.39 -0.02 3.48 16 29 H 0.11 3.67 6.52 -2.39 -0.02 3.65 16 30 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.41 5.41 9.06 -74.06 -0.67 4.74 16 33 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 36 H 0.05 1.68 6.15 -2.38 -0.01 1.67 16 Total: -1.00 -64.75 314.80 5.05 -59.70 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.43 Total: 32.76 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.36 Total: -18.07 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.47 Total: -68.58 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.30 Total: -45.64 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.83 kcal Total: -64.75 5.05 -59.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520153513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.056 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds