Wall clock time and date at job start Mon Mar 30 2020 01:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37714 * 119.99898 * 2 1 4 4 C 1.39680 * 119.99654 * 180.25849 * 3 2 1 5 5 C 1.43200 * 119.99762 * 179.78344 * 4 3 2 6 6 N 4.79856 * 134.60195 * 359.76805 * 2 1 3 7 7 C 1.39675 * 120.00113 * 359.76453 * 4 3 2 8 8 C 1.37719 * 120.00060 * 359.97438 * 7 4 3 9 9 C 1.50704 * 120.00015 * 180.02562 * 8 7 4 10 10 C 1.39673 * 119.99719 * 359.97438 * 8 7 4 11 11 C 1.47802 * 119.99723 * 179.97438 * 10 8 7 12 12 O 1.21463 * 119.99683 * 90.00342 * 11 10 8 13 13 O 1.34711 * 120.00052 * 270.00265 * 11 10 8 14 14 C 1.45198 * 116.99905 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.46912 * 330.00621 * 14 13 11 16 16 C 1.53000 * 109.46967 * 90.00185 * 14 13 11 17 17 C 1.50694 * 109.47115 * 210.00150 * 14 13 11 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09004 * 109.46864 * 270.23191 * 1 2 3 26 26 H 1.08996 * 109.47578 * 30.23135 * 1 2 3 27 27 H 1.08997 * 109.47282 * 150.24043 * 1 2 3 28 28 H 1.07995 * 120.00585 * 0.04099 * 3 2 1 29 29 H 1.08003 * 119.99886 * 180.02562 * 7 4 3 30 30 H 1.08996 * 109.46993 * 269.98128 * 9 8 7 31 31 H 1.09000 * 109.47069 * 29.98261 * 9 8 7 32 32 H 1.09003 * 109.46572 * 149.97864 * 9 8 7 33 33 H 1.09007 * 109.47356 * 299.99990 * 16 14 13 34 34 H 1.09000 * 109.47156 * 59.99715 * 16 14 13 35 35 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 36 36 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1926 0.0000 4 6 3.5923 1.1926 -0.0055 5 6 4.3083 2.4327 -0.0101 6 7 4.8764 3.4166 -0.0138 7 6 4.2907 -0.0170 -0.0059 8 6 3.6021 -1.2097 -0.0005 9 6 4.3556 -2.5149 -0.0004 10 6 2.2054 -1.2096 0.0060 11 6 1.4664 -2.4896 0.0113 12 8 1.1676 -3.0140 1.0654 13 8 1.1242 -3.0746 -1.1529 14 6 0.4001 -4.3305 -1.0717 15 1 0.6915 -4.8599 -0.1646 16 6 -1.1038 -4.0508 -1.0382 17 6 0.7268 -5.1774 -2.2746 18 1 1.4106 -4.8089 -3.0249 19 6 0.1526 -6.4229 -2.4174 20 7 -0.6797 -6.8719 -1.5035 21 14 0.5571 -7.4723 -3.9088 22 1 -0.1834 -8.7569 -3.8257 23 1 0.1601 -6.7506 -5.1443 24 1 2.0166 -7.7442 -3.9417 25 1 -0.3633 0.0042 1.0277 26 1 -0.3634 0.8878 -0.5174 27 1 -0.3634 -0.8921 -0.5101 28 1 1.6557 2.1280 0.0007 29 1 5.3707 -0.0170 -0.0097 30 1 4.5330 -2.8320 -1.0281 31 1 5.3102 -2.3833 0.5091 32 1 3.7686 -3.2732 0.5178 33 1 -1.3402 -3.4382 -0.1681 34 1 -1.3952 -3.5213 -1.9453 35 1 -1.6474 -4.9935 -0.9768 36 1 -1.0839 -7.7479 -1.6041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524672572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:21 Heat of formation + Delta-G solvation = -47.775384 kcal Electronic energy + Delta-G solvation = -20302.774002 eV Core-core repulsion = 17137.706921 eV Total energy + Delta-G solvation = -3165.067081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48386 -38.92652 -36.72020 -35.73648 -33.86621 -33.34417 -32.48950 -29.68753 -27.82356 -26.98506 -25.43223 -25.05571 -21.93421 -21.03853 -20.03198 -18.17867 -17.59497 -16.73421 -16.49822 -15.89894 -14.78342 -14.55625 -14.39356 -14.15234 -13.98205 -13.54633 -13.29666 -13.21228 -13.12374 -13.06621 -12.76818 -12.29912 -12.06281 -11.93114 -11.76437 -11.55192 -11.34556 -11.22287 -11.09771 -10.91131 -10.46503 -10.34537 -9.87767 -9.65113 -9.04025 -8.92472 -8.87236 -8.54860 -6.24130 -4.31535 0.41361 1.07958 2.42846 2.61662 2.69881 3.22883 3.26415 3.28080 3.42313 3.59580 3.65759 4.27761 4.49059 4.56109 4.85088 5.08749 5.12352 5.15070 5.32065 5.37796 5.59316 5.60425 5.69042 5.69244 5.95920 5.96623 6.12746 6.15694 6.29410 6.49974 6.56724 6.79933 6.81357 7.02401 7.23662 7.50589 7.63449 7.82498 8.05434 8.47538 8.78566 9.34129 10.83175 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.004363 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.716500 B = 6416.242054 C = 6830.261273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 C -0.080 4.080 4 C -0.013 4.013 5 C 0.261 3.739 6 N -0.420 5.420 7 C -0.079 4.079 8 C -0.041 4.041 9 C -0.127 4.127 10 C -0.064 4.064 11 C 0.501 3.499 12 O -0.505 6.505 13 O -0.345 6.345 14 C 0.214 3.786 15 H 0.048 0.952 16 C -0.156 4.156 17 C -0.523 4.523 18 H 0.069 0.931 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.016 0.984 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 11.539 2.369 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.043 4.043 3 C -0.100 4.100 4 C -0.017 4.017 5 C -0.055 4.055 6 N -0.095 5.095 7 C -0.100 4.100 8 C -0.041 4.041 9 C -0.183 4.183 10 C -0.066 4.066 11 C 0.343 3.657 12 O -0.395 6.395 13 O -0.261 6.261 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.214 4.214 17 C -0.561 4.561 18 H 0.087 0.913 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.739 3.261 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.828 12.687 2.686 14.217 hybrid contribution -0.166 -1.043 -0.628 1.229 sum 5.662 11.644 2.058 13.110 Atomic orbital electron populations 1.20967 0.89681 1.04199 1.03453 1.19770 0.96806 0.90768 0.96953 1.20880 0.91660 0.98140 0.99334 1.15979 0.92192 0.86876 1.06634 1.25663 0.93377 0.92828 0.93597 1.81252 1.08545 1.10864 1.08888 1.20895 1.00185 0.89644 0.99251 1.19800 0.91577 0.96082 0.96654 1.20969 1.00067 0.93309 1.03982 1.19452 0.93207 0.91915 1.02072 1.20949 0.76662 0.84258 0.83806 1.90834 1.52079 1.63592 1.32958 1.86672 1.67613 1.40341 1.31446 1.20718 0.87713 0.75992 0.99359 0.93434 1.22186 0.98673 1.02856 0.97679 1.20968 1.28292 1.00262 1.06541 0.91253 1.24881 0.94661 0.97227 0.97093 1.69882 1.29340 1.19353 1.34052 0.86327 0.78665 0.79046 0.82079 1.21019 1.19892 1.19934 0.90061 0.90379 0.90337 0.84317 0.84286 0.89456 0.90564 0.90557 0.96454 0.94280 0.88099 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.61 36.01 0.35 -1.15 16 2 C -0.04 -0.54 5.91 -104.28 -0.62 -1.16 16 3 C -0.08 -0.82 9.38 -39.23 -0.37 -1.18 16 4 C -0.01 -0.14 5.73 -106.90 -0.61 -0.75 16 5 C 0.26 2.89 15.32 -22.47 -0.34 2.55 16 6 N -0.42 -5.47 18.54 41.84 0.78 -4.70 16 7 C -0.08 -0.82 9.38 -39.23 -0.37 -1.19 16 8 C -0.04 -0.53 5.91 -104.27 -0.62 -1.14 16 9 C -0.13 -1.57 9.61 36.01 0.35 -1.22 16 10 C -0.06 -0.99 5.76 -104.91 -0.60 -1.59 16 11 C 0.50 9.93 4.26 34.64 0.15 10.07 16 12 O -0.50 -11.33 16.36 -19.24 -0.31 -11.65 16 13 O -0.34 -7.76 9.87 -40.52 -0.40 -8.16 16 14 C 0.21 5.47 2.56 -27.89 -0.07 5.40 16 15 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 16 C -0.16 -3.75 9.33 37.16 0.35 -3.41 16 17 C -0.52 -14.05 8.90 -34.44 -0.31 -14.36 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.38 11.32 55.43 0.63 -23.76 16 21 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.08 1.13 7.07 -51.93 -0.37 0.76 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.08 1.14 7.06 -51.93 -0.37 0.77 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 2.61 6.07 -51.93 -0.32 2.30 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -29.88 322.24 -6.63 -36.51 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.34 Total: -0.93 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.82 Total: -7.54 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 1.40 Total: -28.45 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.71 Total: -19.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.88 -6.63 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524672572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.264 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds