Wall clock time and date at job start Mon Mar 30 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38401 * 119.84614 * 2 1 4 4 C 1.37911 * 120.16152 * 179.74511 * 3 2 1 5 5 C 1.39715 * 119.83411 * 0.26458 * 4 3 2 6 6 C 1.47762 * 120.15219 * 180.02562 * 5 4 3 7 7 O 1.21676 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.46836 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.35116 * 120.00392 * 179.97438 * 8 6 5 10 10 C 1.46816 * 120.00244 * 180.02562 * 9 8 6 11 11 O 1.21718 * 120.00094 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00012 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00120 * 0.02562 * 12 10 9 14 14 C 1.35721 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.07999 * 120.00080 * 322.58930 * 14 12 10 16 16 C 1.39961 * 119.99778 * 142.59294 * 14 12 10 17 17 N 1.30799 * 119.99945 * 158.66445 * 16 14 12 18 18 Si 1.86801 * 120.00202 * 338.65593 * 16 14 12 19 19 H 1.48502 * 109.46635 * 95.73963 * 18 16 14 20 20 H 1.48499 * 109.47133 * 215.73911 * 18 16 14 21 21 H 1.48494 * 109.47013 * 335.74275 * 18 16 14 22 22 C 1.39714 * 119.69457 * 359.97438 * 5 4 3 23 23 C 1.37906 * 119.84023 * 0.02562 * 22 5 4 24 24 H 1.08997 * 109.47409 * 89.99531 * 1 2 3 25 25 H 1.09000 * 109.47506 * 209.99920 * 1 2 3 26 26 H 1.09000 * 109.46848 * 329.99477 * 1 2 3 27 27 H 1.08006 * 119.92288 * 0.02805 * 3 2 1 28 28 H 1.08000 * 120.08231 * 180.27722 * 4 3 2 29 29 H 1.08003 * 120.00020 * 0.02562 * 8 6 5 30 30 H 1.08002 * 119.99670 * 359.97438 * 9 8 6 31 31 H 1.08991 * 109.47057 * 85.02531 * 13 12 10 32 32 H 1.09003 * 109.46982 * 205.02878 * 13 12 10 33 33 H 1.08998 * 109.46769 * 325.02672 * 13 12 10 34 34 H 0.97000 * 120.00119 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.08237 * 180.02562 * 22 5 4 36 36 H 1.08002 * 119.92124 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5748 1.2080 0.0053 5 6 4.2766 -0.0001 0.0051 6 6 5.7542 -0.0002 0.0113 7 8 6.3625 1.0536 0.0162 8 6 6.4883 -1.2718 0.0117 9 6 7.8395 -1.2719 0.0168 10 6 8.5735 -2.5434 0.0166 11 8 7.9649 -3.5975 0.0112 12 7 9.9213 -2.5435 0.0223 13 6 10.6539 -1.2748 0.0293 14 6 10.5999 -3.7189 0.0215 15 1 10.2241 -4.5597 0.5856 16 6 11.7867 -3.8412 -0.7102 17 7 12.6493 -4.7761 -0.4057 18 14 12.1387 -2.6696 -2.1219 19 1 12.9876 -1.5517 -1.6372 20 1 12.8490 -3.3975 -3.2039 21 1 10.8594 -2.1282 -2.6465 22 6 3.5747 -1.2082 0.0000 23 6 2.1957 -1.2006 -0.0052 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6520 2.1336 0.0005 28 1 4.1110 2.1455 0.0098 29 1 5.9483 -2.2071 0.0069 30 1 8.3795 -0.3366 0.0203 31 1 10.7541 -0.9187 1.0545 32 1 11.6438 -1.4244 -0.4018 33 1 10.1088 -0.5373 -0.5598 34 1 13.4717 -4.8612 -0.9130 35 1 4.1108 -2.1457 0.0003 36 1 1.6518 -2.1336 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542521667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:05 Heat of formation + Delta-G solvation = -13.386586 kcal Electronic energy + Delta-G solvation = -19492.471039 eV Core-core repulsion = 16328.895169 eV Total energy + Delta-G solvation = -3163.575871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05945 -38.86483 -38.23328 -35.03019 -33.20333 -32.54121 -32.12048 -31.07291 -28.10108 -26.69871 -25.85824 -23.84390 -22.79023 -21.71817 -19.71681 -18.22765 -17.51110 -17.16833 -16.29297 -15.63798 -15.55716 -15.27424 -14.56155 -14.36260 -14.27219 -14.10160 -13.85014 -13.76415 -13.51538 -12.79411 -12.53803 -12.48952 -12.33135 -12.12746 -12.08113 -11.80827 -11.53130 -11.08667 -10.92712 -10.48443 -10.08179 -9.75343 -9.34628 -9.21659 -9.14939 -8.86069 -8.67256 -7.91746 -6.62405 -4.06256 0.38893 1.22654 1.33486 2.86798 2.97272 3.14121 3.18270 3.73415 3.94432 3.99793 4.15073 4.48205 4.58341 4.62054 4.80893 4.87987 5.00104 5.19906 5.26480 5.28045 5.40439 5.47328 5.52094 5.63799 5.78297 5.79953 5.84330 6.02374 6.15104 6.19929 6.22759 6.32778 6.48119 6.59807 6.74185 7.33039 7.64655 8.12787 8.34303 8.79498 9.11660 9.65664 10.48018 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003411 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.023265 B = 8205.998605 C = 8602.752503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.137 4.137 4 C -0.061 4.061 5 C -0.161 4.161 6 C 0.424 3.576 7 O -0.465 6.465 8 C -0.205 4.205 9 C -0.078 4.078 10 C 0.457 3.543 11 O -0.568 6.568 12 N -0.438 5.438 13 C 0.053 3.947 14 C -0.317 4.317 15 H 0.111 0.889 16 C 0.062 3.938 17 N -0.841 5.841 18 Si 0.882 3.118 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.065 4.065 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.280 0.720 35 H 0.139 0.861 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 11.613 -0.167 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.155 4.155 4 C -0.079 4.079 5 C -0.162 4.162 6 C 0.306 3.694 7 O -0.344 6.344 8 C -0.227 4.227 9 C -0.100 4.100 10 C 0.249 3.751 11 O -0.453 6.453 12 N -0.157 5.157 13 C -0.090 4.090 14 C -0.445 4.445 15 H 0.128 0.872 16 C -0.147 4.147 17 N -0.474 5.474 18 Si 0.708 3.292 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.185 1.185 22 C -0.083 4.083 23 C -0.153 4.153 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.627 11.505 -0.192 21.050 hybrid contribution 0.459 0.502 -0.758 1.019 sum -17.167 12.007 -0.950 20.971 Atomic orbital electron populations 1.20863 0.90999 1.03038 1.02592 1.20197 0.96274 0.93268 0.96452 1.20998 0.93917 0.97719 1.02892 1.21373 0.93980 0.97861 0.94675 1.20472 0.94754 0.94302 1.06652 1.20604 0.87996 0.88834 0.71944 1.90592 1.71236 1.34629 1.37959 1.23464 0.95306 0.98505 1.05404 1.23951 0.95387 0.99218 0.91423 1.18201 0.82715 0.88617 0.85564 1.90673 1.67165 1.32673 1.54755 1.43356 1.04320 1.06032 1.61990 1.22206 0.97812 0.87223 1.01735 1.19149 1.04552 0.91287 1.29473 0.87182 1.25606 0.95259 0.96738 0.97146 1.69469 1.07924 1.32539 1.37512 0.86870 0.79302 0.80445 0.82537 1.19808 1.20987 1.18452 1.21616 0.94259 0.97942 0.94489 1.21061 0.94073 0.97793 1.02352 0.90811 0.91220 0.91356 0.85614 0.84935 0.83971 0.85249 0.92215 0.91324 0.92071 0.90932 0.84349 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.00 36.00 0.36 -0.37 16 2 C -0.06 -0.57 5.89 -104.50 -0.62 -1.18 16 3 C -0.14 -1.33 9.68 -39.64 -0.38 -1.72 16 4 C -0.06 -0.72 9.60 -39.15 -0.38 -1.10 16 5 C -0.16 -2.15 5.88 -104.90 -0.62 -2.77 16 6 C 0.42 6.71 7.08 -32.21 -0.23 6.48 16 7 O -0.47 -8.22 16.25 5.21 0.08 -8.13 16 8 C -0.21 -3.51 9.07 -37.22 -0.34 -3.85 16 9 C -0.08 -1.49 8.77 -37.23 -0.33 -1.82 16 10 C 0.46 10.95 7.57 -12.79 -0.10 10.85 16 11 O -0.57 -15.46 16.10 5.17 0.08 -15.38 16 12 N -0.44 -10.74 2.56 -123.68 -0.32 -11.06 16 13 C 0.05 1.06 8.62 59.85 0.52 1.57 16 14 C -0.32 -8.87 9.36 -15.19 -0.14 -9.01 16 15 H 0.11 3.44 7.89 -52.49 -0.41 3.03 16 16 C 0.06 1.67 5.30 -17.35 -0.09 1.58 16 17 N -0.84 -23.41 13.93 55.55 0.77 -22.64 16 18 Si 0.88 19.99 24.97 -169.99 -4.24 15.74 16 19 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.06 -0.76 9.46 -39.15 -0.37 -1.14 16 23 C -0.13 -1.34 9.68 -39.64 -0.38 -1.72 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16 29 H 0.14 2.36 5.81 -52.48 -0.30 2.06 16 30 H 0.13 2.24 5.80 -52.49 -0.30 1.94 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.40 3.43 -51.93 -0.18 1.22 16 33 H 0.06 1.04 6.39 -51.93 -0.33 0.71 16 34 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 35 H 0.14 1.54 6.23 -52.49 -0.33 1.21 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -32.19 310.74 -5.98 -38.17 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.95 Total: 2.79 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.09 Total: -4.19 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.46 Total: -33.69 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.24 Total: 15.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.19 -5.98 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542521667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.785 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds