Wall clock time and date at job start Mon Mar 30 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38401 * 119.84614 * 2 1 4 4 C 1.37911 * 120.16152 * 179.74511 * 3 2 1 5 5 C 1.39715 * 119.83411 * 0.26458 * 4 3 2 6 6 C 1.47762 * 120.15219 * 180.02562 * 5 4 3 7 7 O 1.21676 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.46836 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.35116 * 120.00392 * 179.97438 * 8 6 5 10 10 C 1.46816 * 120.00244 * 180.02562 * 9 8 6 11 11 O 1.21718 * 120.00094 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00012 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00120 * 0.02562 * 12 10 9 14 14 C 1.35721 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.07999 * 120.00080 * 322.58930 * 14 12 10 16 16 C 1.39961 * 119.99778 * 142.59294 * 14 12 10 17 17 N 1.30799 * 119.99945 * 158.66445 * 16 14 12 18 18 Si 1.86801 * 120.00202 * 338.65593 * 16 14 12 19 19 H 1.48502 * 109.46635 * 95.73963 * 18 16 14 20 20 H 1.48499 * 109.47133 * 215.73911 * 18 16 14 21 21 H 1.48494 * 109.47013 * 335.74275 * 18 16 14 22 22 C 1.39714 * 119.69457 * 359.97438 * 5 4 3 23 23 C 1.37906 * 119.84023 * 0.02562 * 22 5 4 24 24 H 1.08997 * 109.47409 * 89.99531 * 1 2 3 25 25 H 1.09000 * 109.47506 * 209.99920 * 1 2 3 26 26 H 1.09000 * 109.46848 * 329.99477 * 1 2 3 27 27 H 1.08006 * 119.92288 * 0.02805 * 3 2 1 28 28 H 1.08000 * 120.08231 * 180.27722 * 4 3 2 29 29 H 1.08003 * 120.00020 * 0.02562 * 8 6 5 30 30 H 1.08002 * 119.99670 * 359.97438 * 9 8 6 31 31 H 1.08991 * 109.47057 * 85.02531 * 13 12 10 32 32 H 1.09003 * 109.46982 * 205.02878 * 13 12 10 33 33 H 1.08998 * 109.46769 * 325.02672 * 13 12 10 34 34 H 0.97000 * 120.00119 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.08237 * 180.02562 * 22 5 4 36 36 H 1.08002 * 119.92124 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5748 1.2080 0.0053 5 6 4.2766 -0.0001 0.0051 6 6 5.7542 -0.0002 0.0113 7 8 6.3625 1.0536 0.0162 8 6 6.4883 -1.2718 0.0117 9 6 7.8395 -1.2719 0.0168 10 6 8.5735 -2.5434 0.0166 11 8 7.9649 -3.5975 0.0112 12 7 9.9213 -2.5435 0.0223 13 6 10.6539 -1.2748 0.0293 14 6 10.5999 -3.7189 0.0215 15 1 10.2241 -4.5597 0.5856 16 6 11.7867 -3.8412 -0.7102 17 7 12.6493 -4.7761 -0.4057 18 14 12.1387 -2.6696 -2.1219 19 1 12.9876 -1.5517 -1.6372 20 1 12.8490 -3.3975 -3.2039 21 1 10.8594 -2.1282 -2.6465 22 6 3.5747 -1.2082 0.0000 23 6 2.1957 -1.2006 -0.0052 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6520 2.1336 0.0005 28 1 4.1110 2.1455 0.0098 29 1 5.9483 -2.2071 0.0069 30 1 8.3795 -0.3366 0.0203 31 1 10.7541 -0.9187 1.0545 32 1 11.6438 -1.4244 -0.4018 33 1 10.1088 -0.5373 -0.5598 34 1 13.4717 -4.8612 -0.9130 35 1 4.1108 -2.1457 0.0003 36 1 1.6518 -2.1336 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542521667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:05 Heat of formation + Delta-G solvation = -33.479226 kcal Electronic energy + Delta-G solvation = -19493.342322 eV Core-core repulsion = 16328.895169 eV Total energy + Delta-G solvation = -3164.447153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21602 -40.56603 -39.37707 -36.95186 -34.46570 -34.16988 -33.55589 -31.94405 -29.11934 -28.33202 -27.47658 -25.25569 -23.63197 -22.86549 -21.05518 -19.76695 -19.24274 -18.79442 -17.84639 -17.25385 -16.67234 -16.20169 -16.14629 -15.78135 -15.63722 -15.42833 -14.86647 -14.63154 -14.51848 -14.50107 -14.26846 -14.14176 -13.72938 -13.08907 -12.97208 -12.84792 -12.78257 -12.57750 -12.30584 -11.91920 -11.89215 -11.19587 -11.05131 -10.84548 -10.58812 -9.97236 -9.86312 -9.69445 -8.64680 -6.19848 -0.80225 0.14071 0.41543 1.17557 1.30581 1.42374 1.67166 2.10106 2.31302 2.46722 2.82501 2.89314 3.07114 3.73520 3.81919 3.95509 3.97054 4.08665 4.15633 4.25555 4.38246 4.43431 4.51597 4.71687 4.76686 4.79213 4.87147 4.92458 5.04155 5.14533 5.24335 5.34446 5.41575 5.42429 5.58731 5.94687 5.95346 6.35951 6.42312 6.79484 7.12830 7.72426 8.51425 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003411 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.023265 B = 8205.998605 C = 8602.752503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.137 4.137 4 C -0.067 4.067 5 C -0.188 4.188 6 C 0.431 3.569 7 O -0.481 6.481 8 C -0.172 4.172 9 C -0.096 4.096 10 C 0.459 3.541 11 O -0.613 6.613 12 N -0.453 5.453 13 C 0.048 3.952 14 C -0.349 4.349 15 H 0.051 0.949 16 C 0.020 3.980 17 N -0.888 5.888 18 Si 0.951 3.049 19 H -0.234 1.234 20 H -0.282 1.282 21 H -0.261 1.261 22 C -0.074 4.074 23 C -0.140 4.140 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.287 0.713 35 H 0.137 0.863 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.356 14.737 -1.122 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.155 4.155 4 C -0.085 4.085 5 C -0.189 4.189 6 C 0.314 3.686 7 O -0.361 6.361 8 C -0.194 4.194 9 C -0.118 4.118 10 C 0.251 3.749 11 O -0.500 6.500 12 N -0.172 5.172 13 C -0.094 4.094 14 C -0.478 4.478 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.523 5.523 18 Si 0.773 3.227 19 H -0.159 1.159 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.092 4.092 23 C -0.157 4.157 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.086 14.653 -1.126 24.888 hybrid contribution 0.855 -0.452 -0.373 1.036 sum -19.231 14.201 -1.499 23.953 Atomic orbital electron populations 1.20955 0.88492 1.04319 1.03697 1.20641 0.98098 0.92687 0.93919 1.21332 0.93102 0.99260 1.01803 1.21499 0.95091 0.97214 0.94741 1.20300 0.93014 0.95718 1.09826 1.20687 0.89253 0.87575 0.71066 1.90583 1.71917 1.34872 1.38706 1.23796 0.94887 0.99769 1.00911 1.23691 0.95808 0.97551 0.94712 1.18939 0.82840 0.89693 0.83404 1.90631 1.68272 1.34937 1.56206 1.43414 1.04634 1.06515 1.62611 1.22432 0.97461 0.85555 1.03948 1.18690 1.05995 0.91862 1.31208 0.93141 1.26369 0.94339 0.98873 0.99010 1.69562 1.08801 1.34962 1.38964 0.85806 0.79555 0.79060 0.78283 1.15865 1.20863 1.18462 1.21712 0.95355 0.97347 0.94770 1.21372 0.93365 0.99328 1.01678 0.89584 0.90187 0.89959 0.82856 0.84927 0.83740 0.82782 0.89972 0.91742 0.88752 0.90221 0.84535 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.00 71.23 0.71 -0.24 16 2 C -0.05 -0.79 5.89 -19.79 -0.12 -0.91 16 3 C -0.14 -2.20 9.68 22.23 0.22 -1.99 16 4 C -0.07 -1.45 9.60 22.55 0.22 -1.23 16 5 C -0.19 -4.73 5.88 -20.05 -0.12 -4.85 16 6 C 0.43 13.04 7.08 27.04 0.19 13.23 16 7 O -0.48 -16.15 16.25 -4.27 -0.07 -16.22 16 8 C -0.17 -5.75 9.07 23.80 0.22 -5.54 16 9 C -0.10 -3.61 8.77 23.80 0.21 -3.40 16 10 C 0.46 22.44 7.57 86.49 0.65 23.10 16 11 O -0.61 -34.93 16.10 -4.41 -0.07 -35.00 16 12 N -0.45 -22.64 2.56 -663.41 -1.70 -24.33 16 13 C 0.05 1.80 8.62 127.77 1.10 2.91 16 14 C -0.35 -20.66 9.36 84.51 0.79 -19.87 16 15 H 0.05 3.48 7.89 -2.91 -0.02 3.45 16 16 C 0.02 1.11 5.30 85.26 0.45 1.57 16 17 N -0.89 -51.54 13.93 21.83 0.30 -51.24 16 18 Si 0.95 41.03 24.97 68.60 1.71 42.74 16 19 H -0.23 -8.70 6.71 99.48 0.67 -8.03 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 C -0.07 -1.62 9.46 22.55 0.21 -1.41 16 23 C -0.14 -2.38 9.68 22.23 0.22 -2.16 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 26 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.13 2.78 7.65 -2.91 -0.02 2.76 16 29 H 0.15 4.77 5.81 -2.91 -0.02 4.76 16 30 H 0.15 4.99 5.80 -2.91 -0.02 4.97 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.49 3.43 -2.39 -0.01 2.48 16 33 H 0.09 2.91 6.39 -2.39 -0.02 2.89 16 34 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16 35 H 0.14 2.94 6.23 -2.91 -0.02 2.92 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -74.73 310.74 6.20 -68.54 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.07 Total: 16.31 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.95 Total: -0.79 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.39 Total: -75.57 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.14 Total: -51.22 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.71 Total: 42.74 kcal Total: -74.73 6.20 -68.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542521667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.056 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds