Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38413 * 119.84295 * 2 1 4 4 C 1.37902 * 120.15719 * 179.74281 * 3 2 1 5 5 C 1.39738 * 119.84312 * 0.26447 * 4 3 2 6 6 C 1.47724 * 120.15698 * 180.02562 * 5 4 3 7 7 O 1.21547 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.47485 * 119.99612 * 179.97438 * 6 5 4 9 9 C 1.34380 * 119.99923 * 179.97438 * 8 6 5 10 10 C 1.47605 * 120.00390 * 180.02562 * 9 8 6 11 11 O 1.21547 * 119.99634 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00229 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99854 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47365 * 180.02562 * 13 12 10 15 15 H 1.08009 * 119.99383 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00528 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99979 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47031 * 90.00123 * 18 16 14 20 20 H 1.48503 * 109.46792 * 209.99786 * 18 16 14 21 21 H 1.48501 * 109.47274 * 329.99846 * 18 16 14 22 22 C 1.39741 * 119.68317 * 359.97438 * 5 4 3 23 23 C 1.37900 * 119.83806 * 0.02562 * 22 5 4 24 24 H 1.08999 * 109.47152 * 89.99294 * 1 2 3 25 25 H 1.09000 * 109.47276 * 209.99646 * 1 2 3 26 26 H 1.09000 * 109.46844 * 329.99533 * 1 2 3 27 27 H 1.08002 * 119.92215 * 0.03003 * 3 2 1 28 28 H 1.08008 * 120.08008 * 180.27873 * 4 3 2 29 29 H 1.08002 * 120.00270 * 0.02562 * 8 6 5 30 30 H 1.08002 * 119.99807 * 0.02562 * 9 8 6 31 31 H 0.97003 * 120.00029 * 0.02562 * 12 10 9 32 32 H 1.09003 * 109.47678 * 300.00070 * 13 12 10 33 33 H 1.09003 * 109.47269 * 60.00438 * 13 12 10 34 34 H 0.97004 * 119.99742 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.07815 * 180.02562 * 22 5 4 36 36 H 1.08005 * 119.91691 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2081 0.0054 5 6 4.2767 -0.0001 0.0052 6 6 5.7540 -0.0001 0.0115 7 8 6.3617 1.0525 0.0173 8 6 6.4913 -1.2774 0.0119 9 6 7.8351 -1.2774 0.0171 10 6 8.5732 -2.5557 0.0169 11 8 7.9654 -3.6083 0.0125 12 7 9.9209 -2.5557 0.0215 13 6 10.6533 -3.8244 0.0219 14 6 12.1350 -3.5492 0.0282 15 1 12.4950 -2.5309 0.0320 16 6 13.0310 -4.5971 0.0302 17 7 14.3239 -4.3568 0.0351 18 14 12.4082 -6.3583 0.0243 19 1 12.2493 -6.8225 -1.3773 20 1 13.3834 -7.2304 0.7270 21 1 11.0971 -6.4220 0.7187 22 6 3.5747 -1.2083 0.0001 23 6 2.1957 -1.2006 -0.0052 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6519 2.1337 0.0005 28 1 4.1109 2.1457 0.0099 29 1 5.9513 -2.2127 0.0071 30 1 8.3751 -0.3421 0.0214 31 1 10.4059 -1.7157 0.0254 32 1 10.3870 -4.3976 0.9100 33 1 10.3932 -4.3945 -0.8700 34 1 14.9543 -5.0941 0.0369 35 1 4.1108 -2.1458 0.0004 36 1 1.6518 -2.1337 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556403584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -59.211039 kcal Electronic energy + Delta-G solvation = -18830.285227 eV Core-core repulsion = 15664.722259 eV Total energy + Delta-G solvation = -3165.562968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.26790 -40.57257 -39.42420 -36.30355 -34.50017 -34.35558 -33.68967 -31.97142 -30.25413 -28.79283 -26.16347 -24.14736 -23.64247 -22.72834 -21.50115 -20.23964 -19.43424 -18.51560 -17.46013 -17.34348 -16.58137 -16.30577 -16.18474 -16.08576 -15.70678 -15.52298 -15.01824 -14.76718 -14.53111 -14.48503 -14.33277 -14.19064 -13.32467 -13.06609 -13.00124 -12.86249 -12.71705 -12.59202 -11.93589 -11.92676 -11.68987 -11.29916 -11.03110 -10.94264 -10.93050 -10.02877 -9.98012 -9.70857 -8.40766 -6.48936 -0.83707 0.10107 0.40872 1.33975 1.35778 1.48165 1.58104 2.16902 2.22119 2.28128 2.82955 2.94427 2.96061 3.69298 3.80816 3.91644 3.96231 4.07618 4.14026 4.36552 4.42861 4.68624 4.74061 4.78254 4.85799 4.87899 4.98900 5.01327 5.11663 5.23244 5.23955 5.32766 5.38686 5.40141 5.58291 5.94053 6.04844 6.31615 6.50947 6.70090 7.08868 7.24240 8.73953 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043372 B = 0.002736 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.416719 B =10232.183092 C =10857.149090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.068 4.068 5 C -0.190 4.190 6 C 0.429 3.571 7 O -0.477 6.477 8 C -0.148 4.148 9 C -0.109 4.109 10 C 0.527 3.473 11 O -0.582 6.582 12 N -0.693 5.693 13 C 0.229 3.771 14 C -0.551 4.551 15 H 0.058 0.942 16 C 0.024 3.976 17 N -0.931 5.931 18 Si 0.941 3.059 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.070 4.070 23 C -0.140 4.140 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.412 0.588 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.273 0.727 35 H 0.144 0.856 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.115 9.246 -0.111 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.157 4.157 4 C -0.087 4.087 5 C -0.191 4.191 6 C 0.311 3.689 7 O -0.356 6.356 8 C -0.168 4.168 9 C -0.130 4.130 10 C 0.315 3.685 11 O -0.465 6.465 12 N -0.342 5.342 13 C 0.106 3.894 14 C -0.589 4.589 15 H 0.076 0.924 16 C -0.176 4.176 17 N -0.570 5.570 18 Si 0.764 3.236 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.088 4.088 23 C -0.157 4.157 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.168 0.832 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.248 0.752 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.991 8.962 -0.108 30.345 hybrid contribution 0.931 -0.414 -0.015 1.019 sum -28.060 8.548 -0.123 29.333 Atomic orbital electron populations 1.20962 0.88660 1.04294 1.03678 1.20648 0.98038 0.92796 0.93822 1.21321 0.93200 0.99251 1.01911 1.21502 0.95066 0.97362 0.94725 1.20299 0.93038 0.95691 1.10068 1.20876 0.89220 0.87719 0.71065 1.90591 1.71871 1.35091 1.38016 1.23900 0.94936 1.00024 0.97943 1.23499 0.95837 0.97306 0.96361 1.19042 0.82614 0.89846 0.77041 1.90712 1.68921 1.34470 1.52401 1.46014 1.05682 1.11206 1.71281 1.19210 0.90579 0.83329 0.96297 1.21288 0.89600 0.95004 1.52992 0.92378 1.25653 0.94748 1.03743 0.93471 1.69989 1.02397 1.34111 1.50473 0.85807 0.79056 0.79211 0.79532 1.18874 1.19879 1.18076 1.21737 0.95226 0.97366 0.94511 1.21390 0.93559 0.99210 1.01574 0.89615 0.90103 0.90136 0.83163 0.85145 0.82639 0.82690 0.75242 0.96224 0.96320 0.91796 0.83821 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.00 71.23 0.71 -0.02 16 2 C -0.05 -0.65 5.89 -19.78 -0.12 -0.76 16 3 C -0.14 -1.92 9.68 22.23 0.22 -1.70 16 4 C -0.07 -1.28 9.60 22.55 0.22 -1.06 16 5 C -0.19 -3.98 5.88 -20.04 -0.12 -4.10 16 6 C 0.43 10.74 7.10 27.22 0.19 10.93 16 7 O -0.48 -14.16 16.25 -3.86 -0.06 -14.23 16 8 C -0.15 -3.77 9.07 23.83 0.22 -3.55 16 9 C -0.11 -3.13 9.60 23.86 0.23 -2.90 16 10 C 0.53 19.70 7.78 86.72 0.68 20.38 16 11 O -0.58 -25.28 16.25 -3.86 -0.06 -25.35 16 12 N -0.69 -27.93 5.55 -469.98 -2.61 -30.53 16 13 C 0.23 11.14 4.50 85.63 0.38 11.52 16 14 C -0.55 -30.43 9.83 25.60 0.25 -30.18 16 15 H 0.06 3.39 7.84 -2.91 -0.02 3.36 16 16 C 0.02 1.37 5.47 84.66 0.46 1.83 16 17 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 18 Si 0.94 43.55 27.47 68.60 1.88 45.43 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 22 C -0.07 -1.21 9.46 22.55 0.21 -0.99 16 23 C -0.14 -1.87 9.68 22.23 0.22 -1.66 16 24 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 26 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 27 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.13 2.44 7.65 -2.91 -0.02 2.42 16 29 H 0.16 3.67 5.82 -2.91 -0.02 3.65 16 30 H 0.16 3.96 7.53 -2.91 -0.02 3.93 16 31 H 0.41 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 33 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.14 2.16 6.23 -2.91 -0.02 2.14 16 36 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.04 320.66 3.49 -66.55 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.28 Total: 15.79 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 3.75 Total: -2.27 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.31 Total: -85.93 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.13 Total: -39.57 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -70.04 3.49 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556403584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.340 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds