Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47418 * 37.85836 * 3 2 1 5 5 C 1.36934 * 120.00222 * 264.53732 * 4 3 2 6 6 H 1.07997 * 120.00232 * 196.20267 * 5 4 3 7 7 C 1.38812 * 119.99927 * 16.20054 * 5 4 3 8 8 N 1.31622 * 120.00355 * 16.27936 * 7 5 4 9 9 Si 1.86802 * 119.99966 * 196.27827 * 7 5 4 10 10 H 1.48498 * 109.47139 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47093 * 120.00328 * 9 7 5 12 12 H 1.48499 * 109.47091 * 239.99892 * 9 7 5 13 13 C 1.46495 * 119.99596 * 84.53942 * 4 3 2 14 14 C 1.50700 * 109.46900 * 269.99652 * 13 4 3 15 15 C 1.38389 * 119.92577 * 90.00576 * 14 13 4 16 16 C 1.38339 * 120.30570 * 180.27401 * 15 14 13 17 17 C 1.37968 * 120.15131 * 359.49085 * 16 15 14 18 18 C 1.50695 * 120.07940 * 180.22917 * 17 16 15 19 19 C 1.39611 * 119.84135 * 0.50351 * 17 16 15 20 20 C 1.47731 * 120.14529 * 179.72637 * 19 17 16 21 21 O 1.21468 * 119.99935 * 354.36357 * 20 19 17 22 22 O 1.34713 * 119.99839 * 174.36360 * 20 19 17 23 23 C 1.37929 * 119.92644 * 270.02187 * 14 13 4 24 24 H 4.40638 * 5.51549 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46999 * 277.86016 * 3 2 1 26 26 H 1.09003 * 109.47054 * 157.86328 * 3 2 1 27 27 H 0.96997 * 120.00225 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47117 * 149.99914 * 13 4 3 29 29 H 1.08998 * 109.47536 * 30.00284 * 13 4 3 30 30 H 1.07999 * 119.84324 * 359.97438 * 15 14 13 31 31 H 1.08005 * 119.92822 * 179.72036 * 16 15 14 32 32 H 1.08999 * 109.47416 * 263.69701 * 18 17 16 33 33 H 1.08999 * 109.47113 * 23.69690 * 18 17 16 34 34 H 1.09008 * 109.47161 * 143.69373 * 18 17 16 35 35 H 0.96703 * 116.99979 * 179.97438 * 22 20 19 36 36 H 1.08001 * 120.07464 * 359.95707 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0896 -0.8476 5 6 3.4701 -2.2939 -0.2887 6 1 4.0663 -3.0008 -0.8465 7 6 3.0436 -2.6060 0.9949 8 7 2.0718 -1.9148 1.5519 9 14 3.8488 -4.0073 1.9317 10 1 4.9077 -4.6209 1.0907 11 1 4.4528 -3.4834 3.1831 12 1 2.8264 -5.0309 2.2664 13 6 3.2651 -0.8914 -2.2933 14 6 1.9765 -1.2794 -2.9716 15 6 0.9856 -0.3328 -3.1644 16 6 -0.2026 -0.6817 -3.7810 17 6 -0.4031 -1.9750 -4.2177 18 6 -1.6960 -2.3520 -4.8939 19 6 0.5924 -2.9349 -4.0265 20 6 0.3824 -4.3232 -4.4860 21 8 -0.6944 -4.6570 -4.9380 22 8 1.3853 -5.2189 -4.4036 23 6 1.7873 -2.5772 -3.3985 24 1 -1.0499 -0.0002 -0.0004 25 1 3.0093 -0.1397 1.0181 26 1 3.0088 0.9528 -0.3873 27 1 1.7736 -2.1332 2.4486 28 1 4.0768 -1.5116 -2.6734 29 1 3.4823 0.1569 -2.4982 30 1 1.1387 0.6818 -2.8275 31 1 -0.9737 0.0609 -3.9243 32 1 -2.3736 -2.7923 -4.1625 33 1 -2.1543 -1.4614 -5.3238 34 1 -1.4951 -3.0750 -5.6846 35 1 1.2003 -6.1151 -4.7163 36 1 2.5616 -3.3149 -3.2479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588465711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = 1.571551 kcal Electronic energy + Delta-G solvation = -20887.477762 eV Core-core repulsion = 17724.550525 eV Total energy + Delta-G solvation = -3162.927237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53923 -39.86452 -37.82826 -37.11792 -34.37097 -33.38722 -32.43471 -32.23859 -29.24961 -27.90171 -26.38664 -25.18478 -23.40812 -22.93782 -21.08102 -19.35048 -19.02405 -18.20583 -17.85577 -16.84147 -16.77793 -16.49677 -16.25282 -15.54041 -15.36570 -15.11631 -14.65511 -14.43101 -14.21151 -13.66082 -13.43020 -13.34171 -13.15421 -12.80264 -12.75607 -12.63481 -12.52968 -12.27676 -12.21080 -12.07531 -11.74441 -11.14975 -10.80749 -10.70958 -10.20871 -9.86079 -9.43414 -8.91511 -7.79390 -5.21487 -0.19394 0.50024 1.46644 1.50482 1.57151 1.58756 2.13658 2.41067 2.58772 2.67940 2.86885 3.34962 3.84516 3.93634 3.98013 4.13741 4.18871 4.23574 4.35952 4.63784 4.66587 4.78945 4.80848 4.89385 4.98707 5.08837 5.12340 5.20668 5.42004 5.47227 5.57761 5.63474 5.67323 5.77207 5.78421 6.04872 6.32686 6.99024 7.14497 7.45816 7.85826 8.25852 9.20908 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.007029 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.466658 B = 3982.638067 C = 4855.129258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.113 4.113 3 C 0.264 3.736 4 N -0.589 5.589 5 C -0.253 4.253 6 H 0.078 0.922 7 C -0.048 4.048 8 N -0.916 5.916 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.306 1.306 13 C 0.176 3.824 14 C -0.117 4.117 15 C -0.060 4.060 16 C -0.135 4.135 17 C -0.041 4.041 18 C -0.112 4.112 19 C -0.161 4.161 20 C 0.531 3.469 21 O -0.535 6.535 22 O -0.509 6.509 23 C -0.051 4.051 24 H 0.209 0.791 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.244 0.756 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.430 0.570 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 2.096 -11.787 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.116 4.116 3 C 0.139 3.861 4 N -0.308 5.308 5 C -0.383 4.383 6 H 0.096 0.904 7 C -0.244 4.244 8 N -0.562 5.562 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.234 1.234 13 C 0.051 3.949 14 C -0.120 4.120 15 C -0.079 4.079 16 C -0.153 4.153 17 C -0.042 4.042 18 C -0.168 4.168 19 C -0.162 4.162 20 C 0.378 3.622 21 O -0.428 6.428 22 O -0.322 6.322 23 C -0.071 4.071 24 H 0.226 0.774 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.291 0.709 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.848 2.356 -11.601 11.981 hybrid contribution -0.329 -1.783 0.894 2.022 sum -2.177 0.572 -10.706 10.940 Atomic orbital electron populations 1.24724 0.96088 1.05916 1.05555 1.24520 0.95775 0.95437 0.95851 1.17959 0.82824 0.88880 0.96417 1.44463 1.74094 1.10967 1.01241 1.19551 1.25237 0.95650 0.97899 0.90449 1.25522 0.97916 1.00877 1.00075 1.70239 1.27725 1.43257 1.14971 0.85349 0.77800 0.79241 0.78884 1.19110 1.21819 1.23373 1.20181 0.91913 1.00520 0.82303 1.21055 1.00520 0.93482 0.96947 1.21392 0.92669 0.99656 0.94201 1.21174 0.98191 0.95632 1.00324 1.20160 0.95209 0.92799 0.96030 1.21004 0.92668 1.02575 1.00513 1.19056 0.97790 0.90699 1.08669 1.20965 0.80958 0.86393 0.73876 1.90780 1.26902 1.80333 1.44803 1.84589 1.42696 1.26151 1.78784 1.21266 0.95665 0.96426 0.93712 0.77414 0.90468 0.91697 0.94662 0.91601 0.90293 0.85156 0.83025 0.91678 0.89724 0.90246 0.70886 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.15 19.01 74.32 1.41 -11.74 16 2 C -0.11 -5.17 10.37 31.13 0.32 -4.85 16 3 C 0.26 11.78 5.45 84.57 0.46 12.24 16 4 N -0.59 -26.54 2.49 -716.92 -1.79 -28.32 16 5 C -0.25 -12.86 9.71 84.03 0.82 -12.04 16 6 H 0.08 3.84 7.86 -2.91 -0.02 3.82 16 7 C -0.05 -2.57 5.02 84.86 0.43 -2.14 16 8 N -0.92 -51.27 9.12 21.65 0.20 -51.07 16 9 Si 0.96 43.97 29.58 68.60 2.03 46.00 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 13 C 0.18 6.38 5.82 85.63 0.50 6.88 16 14 C -0.12 -4.20 5.22 -19.90 -0.10 -4.31 16 15 C -0.06 -1.94 8.38 22.33 0.19 -1.75 16 16 C -0.14 -3.97 9.66 22.23 0.21 -3.76 16 17 C -0.04 -1.30 5.91 -19.60 -0.12 -1.42 16 18 C -0.11 -3.00 8.74 71.23 0.62 -2.38 16 19 C -0.16 -5.60 5.87 -20.10 -0.12 -5.72 16 20 C 0.53 17.25 8.21 70.33 0.58 17.83 16 21 O -0.54 -18.25 14.12 19.94 0.28 -17.97 16 22 O -0.51 -13.61 12.70 -56.23 -0.71 -14.32 16 23 C -0.05 -1.89 9.26 22.54 0.21 -1.68 16 24 H 0.21 7.67 7.80 -4.42 -0.03 7.63 16 25 H 0.08 3.92 6.19 -2.38 -0.01 3.90 16 26 H 0.07 2.42 7.97 -2.39 -0.02 2.41 16 27 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.07 2.29 7.97 -2.39 -0.02 2.27 16 29 H 0.08 2.42 7.89 -2.39 -0.02 2.40 16 30 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 34 H 0.08 2.28 5.84 -2.38 -0.01 2.27 16 35 H 0.43 6.77 9.11 -74.06 -0.67 6.10 16 36 H 0.12 4.60 7.63 -2.91 -0.02 4.57 16 Total: -1.00 -64.75 314.83 5.84 -58.91 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.42 Total: 21.61 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 5.41 Total: -14.83 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.59 Total: -79.39 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.43 Total: -32.30 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.75 5.84 -58.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588465711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.478 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds