Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46940 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00072 * 180.02562 * 12 11 10 15 15 C 1.47421 * 125.64785 * 359.69756 * 14 12 11 16 16 C 1.54692 * 104.93994 * 204.07214 * 15 14 12 17 17 H 1.09001 * 110.85196 * 81.33652 * 16 15 14 18 18 F 1.39905 * 111.10377 * 205.10791 * 16 15 14 19 19 C 1.55157 * 101.67807 * 323.27635 * 16 15 14 20 20 C 1.47022 * 125.64640 * 180.02562 * 14 12 11 21 21 H 1.08992 * 109.88654 * 59.33117 * 20 14 12 22 22 C 1.50705 * 109.88462 * 298.32002 * 20 14 12 23 23 O 1.20836 * 119.99543 * 0.02562 * 22 20 14 24 24 O 1.34219 * 120.00575 * 180.02562 * 22 20 14 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 31 31 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 32 32 H 1.09001 * 110.36476 * 322.99620 * 15 14 12 33 33 H 1.09000 * 110.36839 * 85.32482 * 15 14 12 34 34 H 1.08998 * 110.72051 * 276.97523 * 19 16 15 35 35 H 1.08993 * 110.87454 * 153.77218 * 19 16 15 36 36 H 0.96701 * 117.00692 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4598 -6.1324 0.0214 13 8 3.6522 -5.9107 0.0216 14 7 2.0106 -7.4031 0.0261 15 6 0.5948 -7.8138 0.0328 16 6 0.5945 -9.2341 0.6458 17 1 0.6362 -9.1871 1.7340 18 9 -0.5194 -9.9661 0.2206 19 6 1.9049 -9.8275 0.0642 20 6 2.8515 -8.6091 0.0324 21 1 3.4912 -8.6104 0.9148 22 6 3.6978 -8.6503 -1.2139 23 8 3.6135 -7.7641 -2.0310 24 8 4.5452 -9.6713 -1.4163 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.8721 -3.6081 -0.8798 29 1 2.8721 -3.6002 0.9002 30 1 0.8536 -5.0411 0.9058 31 1 0.8541 -5.0485 -0.8741 32 1 0.0056 -7.1343 0.6487 33 1 0.2031 -7.8419 -0.9840 34 1 1.7400 -10.2144 -0.9414 35 1 2.3010 -10.6065 0.7154 36 1 5.0673 -9.6539 -2.2300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = -184.111152 kcal Electronic energy + Delta-G solvation = -21116.820353 eV Core-core repulsion = 17515.072085 eV Total energy + Delta-G solvation = -3601.748268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.09366 -41.02464 -39.36975 -37.35000 -36.22241 -34.21756 -32.30448 -31.52745 -29.98325 -27.82898 -25.06670 -23.87000 -22.38815 -21.72151 -20.16500 -19.16043 -18.50325 -17.49819 -17.28139 -16.64882 -16.19825 -15.84684 -15.49400 -15.29943 -14.86944 -14.81793 -14.39260 -13.92809 -13.64082 -13.23333 -13.11100 -12.80258 -12.33819 -12.19831 -11.81632 -11.65742 -11.58774 -11.35872 -11.30775 -10.80099 -10.67716 -10.59929 -10.52681 -9.80206 -9.67129 -9.29580 -9.03910 -9.00761 -8.30790 -5.96521 -3.97834 2.00796 2.30300 2.73607 3.03751 3.36036 3.41707 3.46571 3.67313 3.77609 4.00901 4.28897 4.50331 4.60772 4.79226 4.93233 5.05210 5.09870 5.18363 5.26850 5.39677 5.56820 5.64456 5.69744 5.90057 6.20867 6.28627 6.72058 6.92135 7.15212 7.27075 7.68989 7.71691 7.84223 8.03961 8.25488 8.47977 9.09052 9.66110 11.15028 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003746 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.162620 B = 7473.115080 C = 8287.956461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.130 4.130 12 C 0.540 3.460 13 O -0.517 6.517 14 N -0.614 5.614 15 C 0.077 3.923 16 C 0.081 3.919 17 H 0.112 0.888 18 F -0.195 7.195 19 C -0.142 4.142 20 C 0.150 3.850 21 H 0.119 0.881 22 C 0.466 3.534 23 O -0.485 6.485 24 O -0.518 6.518 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -24.380 1.465 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.331 3.669 13 O -0.390 6.390 14 N -0.353 5.353 15 C -0.047 4.047 16 C 0.044 3.956 17 H 0.130 0.870 18 F -0.175 7.175 19 C -0.181 4.181 20 C 0.043 3.957 21 H 0.137 0.863 22 C 0.304 3.696 23 O -0.370 6.370 24 O -0.331 6.331 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.649 -23.769 1.574 23.878 hybrid contribution 0.709 0.846 -0.720 1.318 sum 2.358 -22.923 0.853 23.060 Atomic orbital electron populations 1.69958 1.06029 1.26541 1.51217 1.25009 0.94850 0.99228 0.95370 0.86592 0.79890 0.83415 0.78117 1.20676 1.21257 1.19845 1.21263 0.93195 0.90989 1.50154 0.92583 1.19129 0.93928 0.91383 0.97166 1.21484 0.98734 0.91353 1.01819 1.21858 0.97920 0.93380 1.03851 1.21123 0.90408 0.81593 0.73777 1.90697 1.17316 1.83280 1.47748 1.48470 1.05978 1.04357 1.76464 1.22841 0.83358 0.95375 1.03095 1.22631 0.82470 0.90072 1.00457 0.87019 1.92859 1.54309 1.78430 1.91949 1.23200 0.93909 0.96266 1.04685 1.20940 0.93062 0.86943 0.94718 0.86320 1.23656 0.78589 0.78916 0.88416 1.90794 1.64380 1.36749 1.45078 1.84474 1.52801 1.47821 1.47968 0.93068 0.96545 0.96554 0.92568 0.92625 0.89148 0.89084 0.87916 0.89674 0.88645 0.87243 0.72984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.13 -2.21 4.71 -27.88 -0.13 -2.34 16 12 C 0.54 9.05 7.02 -10.98 -0.08 8.98 16 13 O -0.52 -10.69 15.27 -8.30 -0.13 -10.82 16 14 N -0.61 -7.56 2.84 -164.46 -0.47 -8.02 16 15 C 0.08 0.68 6.49 -2.65 -0.02 0.66 16 16 C 0.08 0.53 4.85 -24.70 -0.12 0.41 16 17 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 18 F -0.19 -1.62 17.24 2.25 0.04 -1.58 16 19 C -0.14 -0.90 6.26 -24.90 -0.16 -1.06 16 20 C 0.15 1.50 3.37 -68.10 -0.23 1.27 16 21 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.47 5.71 7.14 36.01 0.26 5.97 16 23 O -0.49 -8.22 15.83 -23.92 -0.38 -8.60 16 24 O -0.52 -4.48 13.40 -39.23 -0.53 -5.00 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.32 7.84 -51.93 -0.41 0.91 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.10 0.78 7.48 -51.93 -0.39 0.39 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.63 7.84 -51.93 -0.41 0.22 16 35 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.41 2.08 9.10 45.56 0.41 2.49 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -37.37 314.04 -6.28 -43.65 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.13 Total: -3.22 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.14 Total: -1.84 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.27 Total: -34.50 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.03 Total: -24.42 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.37 -6.28 -43.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.461 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds