Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46940 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00072 * 180.02562 * 12 11 10 15 15 C 1.47421 * 125.64785 * 359.69756 * 14 12 11 16 16 C 1.54692 * 104.93994 * 204.07214 * 15 14 12 17 17 H 1.09001 * 110.85196 * 81.33652 * 16 15 14 18 18 F 1.39905 * 111.10377 * 205.10791 * 16 15 14 19 19 C 1.55157 * 101.67807 * 323.27635 * 16 15 14 20 20 C 1.47022 * 125.64640 * 180.02562 * 14 12 11 21 21 H 1.08992 * 109.88654 * 59.33117 * 20 14 12 22 22 C 1.50705 * 109.88462 * 298.32002 * 20 14 12 23 23 O 1.20836 * 119.99543 * 0.02562 * 22 20 14 24 24 O 1.34219 * 120.00575 * 180.02562 * 22 20 14 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 31 31 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 32 32 H 1.09001 * 110.36476 * 322.99620 * 15 14 12 33 33 H 1.09000 * 110.36839 * 85.32482 * 15 14 12 34 34 H 1.08998 * 110.72051 * 276.97523 * 19 16 15 35 35 H 1.08993 * 110.87454 * 153.77218 * 19 16 15 36 36 H 0.96701 * 117.00692 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4598 -6.1324 0.0214 13 8 3.6522 -5.9107 0.0216 14 7 2.0106 -7.4031 0.0261 15 6 0.5948 -7.8138 0.0328 16 6 0.5945 -9.2341 0.6458 17 1 0.6362 -9.1871 1.7340 18 9 -0.5194 -9.9661 0.2206 19 6 1.9049 -9.8275 0.0642 20 6 2.8515 -8.6091 0.0324 21 1 3.4912 -8.6104 0.9148 22 6 3.6978 -8.6503 -1.2139 23 8 3.6135 -7.7641 -2.0310 24 8 4.5452 -9.6713 -1.4163 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.8721 -3.6081 -0.8798 29 1 2.8721 -3.6002 0.9002 30 1 0.8536 -5.0411 0.9058 31 1 0.8541 -5.0485 -0.8741 32 1 0.0056 -7.1343 0.6487 33 1 0.2031 -7.8419 -0.9840 34 1 1.7400 -10.2144 -0.9414 35 1 2.3010 -10.6065 0.7154 36 1 5.0673 -9.6539 -2.2300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = -210.205312 kcal Electronic energy + Delta-G solvation = -21117.951881 eV Core-core repulsion = 17515.072085 eV Total energy + Delta-G solvation = -3602.879796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.67230 -41.98922 -40.47292 -38.36255 -37.14240 -36.15189 -34.12059 -32.67252 -30.75803 -29.60004 -26.28487 -25.36960 -23.35907 -22.67614 -21.74350 -20.28122 -19.35720 -18.62205 -18.27384 -18.22004 -17.39017 -16.84240 -16.62903 -16.46255 -16.30125 -15.77317 -15.51823 -15.13410 -14.56979 -14.47695 -14.12269 -14.06809 -13.83958 -13.59223 -13.17241 -12.94080 -12.66193 -12.58318 -12.51145 -12.41813 -12.28307 -11.87324 -11.59709 -11.52143 -11.49556 -11.28786 -10.90289 -10.55071 -10.02403 -8.20909 -6.30909 1.08610 1.31889 1.39085 1.40213 1.51758 1.63723 2.11749 2.41139 3.06973 3.09023 3.12087 3.43098 3.68692 3.82345 4.03388 4.12725 4.19018 4.19959 4.35182 4.48531 4.63385 4.69496 4.73307 4.92492 4.99508 5.05236 5.10664 5.17673 5.51733 5.52246 5.73141 5.84672 6.16120 6.27716 6.83738 6.85804 7.03604 7.37693 8.90679 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003746 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.162620 B = 7473.115080 C = 8287.956461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.123 4.123 12 C 0.540 3.460 13 O -0.567 6.567 14 N -0.609 5.609 15 C 0.065 3.935 16 C 0.091 3.909 17 H 0.143 0.857 18 F -0.203 7.203 19 C -0.129 4.129 20 C 0.141 3.859 21 H 0.135 0.865 22 C 0.467 3.533 23 O -0.542 6.542 24 O -0.503 6.503 25 H 0.265 0.735 26 H 0.007 0.993 27 H -0.002 1.002 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -25.916 2.463 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.163 4.163 12 C 0.331 3.669 13 O -0.445 6.445 14 N -0.345 5.345 15 C -0.057 4.057 16 C 0.054 3.946 17 H 0.160 0.840 18 F -0.183 7.183 19 C -0.167 4.167 20 C 0.036 3.964 21 H 0.152 0.848 22 C 0.308 3.692 23 O -0.431 6.431 24 O -0.316 6.316 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.017 0.983 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.441 -25.385 2.573 25.556 hybrid contribution 0.760 1.226 -1.067 1.794 sum 2.202 -24.159 1.506 24.306 Atomic orbital electron populations 1.70058 1.07457 1.27824 1.51493 1.25883 0.95825 1.02994 0.94612 0.85505 0.78677 0.78736 0.78487 1.19897 1.20087 1.19261 1.21672 0.93291 0.92833 1.50889 0.93206 1.19007 0.94118 0.92199 0.95651 1.21173 0.97706 0.92934 1.00197 1.21674 0.97716 0.91193 1.05685 1.20826 0.89370 0.83040 0.73643 1.90671 1.18976 1.84387 1.50416 1.48266 1.08044 1.03811 1.74395 1.23138 0.81330 0.97609 1.03650 1.22689 0.82028 0.88036 1.01809 0.83988 1.92852 1.54833 1.78429 1.92215 1.23259 0.92801 0.95124 1.05551 1.21350 0.93771 0.87189 0.94122 0.84791 1.24138 0.78400 0.78355 0.88321 1.90783 1.66300 1.38896 1.47150 1.84437 1.52112 1.46142 1.48940 0.92609 0.97504 0.98318 0.94843 0.93568 0.86366 0.88158 0.86491 0.90106 0.88894 0.83687 0.71130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 11 C -0.12 -4.17 4.71 29.85 0.14 -4.03 16 12 C 0.54 18.12 7.02 87.66 0.62 18.73 16 13 O -0.57 -24.03 15.27 10.21 0.16 -23.88 16 14 N -0.61 -14.21 2.84 -792.62 -2.25 -16.46 16 15 C 0.07 1.01 6.49 86.78 0.56 1.57 16 16 C 0.09 0.87 4.85 31.91 0.15 1.03 16 17 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 18 F -0.20 -2.74 17.24 44.97 0.78 -1.97 16 19 C -0.13 -1.18 6.26 31.78 0.20 -0.99 16 20 C 0.14 2.54 3.37 44.60 0.15 2.69 16 21 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 22 C 0.47 11.05 7.14 71.24 0.51 11.56 16 23 O -0.54 -18.71 15.83 26.87 0.43 -18.29 16 24 O -0.50 -7.82 13.40 -51.31 -0.69 -8.51 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 28 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 29 H 0.05 2.15 8.10 -2.38 -0.02 2.13 16 30 H 0.12 3.30 7.84 -2.39 -0.02 3.29 16 31 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.12 1.48 7.48 -2.39 -0.02 1.46 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 0.95 7.84 -2.39 -0.02 0.93 16 35 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.43 3.74 9.10 -74.06 -0.67 3.07 16 Total: -1.00 -83.40 314.04 4.46 -78.94 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 0.42 Total: 2.09 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 3.31 Total: -3.23 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -1.97 Total: -72.84 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.11 Total: -50.68 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -83.40 4.46 -78.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.269 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds