Wall clock time and date at job start Mon Mar 30 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47115 * 239.99481 * 3 2 1 5 5 H 1.48498 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47209 * 119.99893 * 3 2 1 7 7 C 1.37875 * 120.00462 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00711 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46811 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.46865 * 110.99768 * 293.22312 * 12 11 10 14 14 C 1.53614 * 116.10592 * 194.52929 * 13 12 11 15 15 S 1.80173 * 113.03805 * 315.58958 * 14 13 12 16 16 C 1.83749 * 102.69243 * 84.93501 * 15 14 13 17 17 C 1.45859 * 109.14370 * 292.59225 * 16 15 14 18 18 H 1.09000 * 108.32270 * 302.71089 * 17 16 15 19 19 C 1.50698 * 108.18039 * 185.60448 * 17 16 15 20 20 O 1.20829 * 120.00067 * 234.40279 * 19 17 16 21 21 O 1.34224 * 120.00181 * 54.40880 * 19 17 16 22 22 C 1.45538 * 111.00290 * 170.00285 * 12 11 10 23 23 H 0.96997 * 119.99877 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46907 * 59.99307 * 9 7 2 25 25 H 1.09006 * 109.46669 * 300.00122 * 9 7 2 26 26 H 1.09004 * 109.47254 * 60.00228 * 10 9 7 27 27 H 1.08997 * 109.47402 * 299.99834 * 10 9 7 28 28 H 1.09000 * 109.47553 * 60.00268 * 11 10 9 29 29 H 1.09001 * 109.47225 * 299.99663 * 11 10 9 30 30 H 1.08997 * 108.15500 * 72.80682 * 13 12 11 31 31 H 1.08997 * 107.99268 * 316.12653 * 13 12 11 32 32 H 1.09005 * 108.76569 * 194.67477 * 14 13 12 33 33 H 1.08997 * 108.67944 * 76.45154 * 14 13 12 34 34 H 1.08994 * 109.53000 * 172.69024 * 16 15 14 35 35 H 1.09006 * 109.58218 * 52.52204 * 16 15 14 36 36 H 0.96705 * 117.00246 * 180.02562 * 21 19 17 37 37 H 1.08995 * 109.97049 * 108.00449 * 22 12 11 38 38 H 1.09000 * 109.96259 * 346.69489 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 3.1880 -6.1529 -1.2582 14 6 3.9595 -7.4523 -1.5341 15 16 4.8588 -8.0576 -0.0950 16 6 3.5794 -9.0228 0.8039 17 6 2.5597 -8.1107 1.3097 18 1 3.0463 -7.3715 1.9460 19 6 1.5988 -8.9034 2.1579 20 8 0.4144 -8.8694 1.9212 21 8 2.0586 -9.6470 3.1763 22 6 1.7570 -7.3695 0.2383 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8721 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8541 -5.0446 0.8914 30 1 3.9004 -5.3280 -1.2606 31 1 2.4857 -5.9947 -2.0765 32 1 4.6695 -7.2737 -2.3418 33 1 3.2518 -8.2175 -1.8530 34 1 4.0409 -9.5517 1.6377 35 1 3.1205 -9.7420 0.1254 36 1 1.4043 -10.1383 3.6917 37 1 1.7320 -7.9557 -0.6802 38 1 0.7423 -7.1876 0.5927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:01 Heat of formation + Delta-G solvation = -94.839615 kcal Electronic energy + Delta-G solvation = -19225.833046 eV Core-core repulsion = 16194.169058 eV Total energy + Delta-G solvation = -3031.663988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81152 -38.44957 -36.35842 -34.83283 -33.49729 -31.82783 -30.35779 -27.19273 -25.56421 -24.68818 -23.18055 -21.50733 -20.16405 -19.91487 -18.28727 -17.29687 -16.53352 -16.33541 -16.12812 -15.65788 -14.99875 -14.77686 -14.43779 -14.18536 -13.86161 -13.46812 -13.37238 -12.79293 -12.29596 -12.11875 -11.83730 -11.74787 -11.59526 -11.44770 -11.32445 -11.15022 -10.78904 -10.72524 -10.52615 -10.47467 -9.92253 -9.61416 -9.31987 -9.05642 -8.32223 -8.22732 -7.75412 -5.97465 -3.99594 1.45810 1.97033 2.32600 2.82605 3.35461 3.39585 3.42394 3.99990 4.37016 4.48679 4.53512 4.65322 4.81709 4.83854 5.11293 5.21127 5.31437 5.36849 5.38367 5.54044 5.64303 5.71618 5.75693 5.95579 6.01375 6.26682 6.28539 6.67500 6.74083 7.09155 7.25213 7.28870 7.64888 7.70135 7.84664 8.02711 8.45876 9.07415 9.64382 11.13960 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.003930 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.015453 B = 7122.460759 C = 7819.796155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.525 5.525 13 C 0.052 3.948 14 C -0.092 4.092 15 S -0.225 6.225 16 C -0.071 4.071 17 C -0.076 4.076 18 H 0.135 0.865 19 C 0.482 3.518 20 O -0.513 6.513 21 O -0.516 6.516 22 C 0.049 3.951 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.054 0.946 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -21.404 0.860 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.069 4.069 12 N -0.248 5.248 13 C -0.078 4.078 14 C -0.241 4.241 15 S 0.004 5.996 16 C -0.219 4.219 17 C -0.097 4.097 18 H 0.153 0.847 19 C 0.321 3.679 20 O -0.400 6.400 21 O -0.328 6.328 22 C -0.080 4.080 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.464 -20.798 1.173 22.128 hybrid contribution -1.908 0.320 -0.658 2.044 sum 5.556 -20.478 0.514 21.224 Atomic orbital electron populations 1.69956 1.06067 1.26655 1.50965 1.25021 0.94828 0.99229 0.95377 0.86664 0.79578 0.83160 0.78635 1.20279 1.21337 1.20202 1.21209 0.93013 0.91016 1.50441 0.92705 1.19075 0.94030 0.91430 0.97081 1.21645 0.99134 0.92461 1.00969 1.22481 0.93182 0.90606 1.00600 1.62003 1.26825 1.02583 1.33434 1.22282 0.97785 0.96988 0.90709 1.23520 1.01985 1.00090 0.98513 1.86951 1.18651 1.65600 1.28440 1.22350 0.97374 0.98701 1.03480 1.20426 0.94424 0.97125 0.97766 0.84726 1.23785 0.88795 0.76748 0.78536 1.90719 1.18568 1.61652 1.69074 1.84537 1.46022 1.58866 1.43349 1.22067 0.97885 0.91520 0.96521 0.92998 0.96878 0.96603 0.92379 0.93447 0.94937 0.90780 0.89498 0.94052 0.87038 0.90295 0.86170 0.89905 0.73211 0.92753 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.13 5.08 -26.73 -0.14 -2.26 16 11 C 0.06 0.98 4.72 -3.82 -0.02 0.96 16 12 N -0.52 -7.38 4.08 -235.39 -0.96 -8.34 16 13 C 0.05 0.66 4.73 -3.52 -0.02 0.64 16 14 C -0.09 -0.92 5.60 37.48 0.21 -0.71 16 15 S -0.23 -2.44 21.84 -107.50 -2.35 -4.79 16 16 C -0.07 -0.64 5.27 33.78 0.18 -0.46 16 17 C -0.08 -0.81 2.06 -95.14 -0.20 -1.01 16 18 H 0.14 1.60 7.88 -51.93 -0.41 1.19 16 19 C 0.48 5.16 7.58 36.00 0.27 5.43 16 20 O -0.51 -7.06 15.99 -18.75 -0.30 -7.36 16 21 O -0.52 -4.05 12.84 -39.24 -0.50 -4.55 16 22 C 0.05 0.61 4.65 -4.55 -0.02 0.58 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.95 6.86 -51.93 -0.36 0.59 16 28 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 29 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 30 H 0.09 1.20 7.07 -51.93 -0.37 0.84 16 31 H 0.04 0.52 7.77 -51.93 -0.40 0.12 16 32 H 0.11 0.97 8.14 -51.74 -0.42 0.55 16 33 H 0.08 0.70 7.02 -51.75 -0.36 0.34 16 34 H 0.12 0.96 7.64 -51.93 -0.40 0.56 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 1.55 9.10 45.56 0.41 1.97 16 37 H 0.05 0.61 6.05 -51.93 -0.31 0.30 16 38 H 0.10 1.32 6.03 -51.93 -0.31 1.01 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -32.38 316.08 -8.89 -41.27 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.98 Total: -1.38 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.28 Total: -9.98 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.22 Total: -34.79 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.80 Total: -11.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.35 Total: -4.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.38 -8.89 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.565 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds