Wall clock time and date at job start Mon Mar 30 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48495 * 109.47183 * 275.26513 * 3 2 1 5 5 H 1.48499 * 109.46954 * 35.26862 * 3 2 1 6 6 H 1.48507 * 109.47070 * 155.26311 * 3 2 1 7 7 C 1.38946 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 340.36121 * 7 2 1 9 9 N 1.37095 * 120.00253 * 160.35705 * 7 2 1 10 10 C 1.46499 * 120.00064 * 321.43168 * 9 7 2 11 11 C 1.50700 * 109.47066 * 264.24296 * 10 9 7 12 12 O 1.20828 * 119.99780 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00131 * 179.97438 * 11 10 9 14 14 C 1.34781 * 120.00288 * 141.42764 * 9 7 2 15 15 O 1.21291 * 120.00123 * 184.88198 * 14 9 7 16 16 C 1.50704 * 119.99552 * 4.88104 * 14 9 7 17 17 F 1.39897 * 109.47341 * 314.14340 * 16 14 9 18 18 C 1.53000 * 109.46866 * 74.14062 * 16 14 9 19 19 C 1.52999 * 109.46830 * 179.97438 * 18 16 14 20 20 C 1.53000 * 109.47282 * 299.99981 * 19 18 16 21 21 C 1.53000 * 109.47172 * 60.00229 * 20 19 18 22 22 C 1.52999 * 109.46830 * 300.00048 * 21 20 19 23 23 H 0.96997 * 120.00364 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47357 * 24.24273 * 10 9 7 25 25 H 1.09003 * 109.47161 * 144.24653 * 10 9 7 26 26 H 0.96698 * 117.00069 * 180.02562 * 13 11 10 27 27 H 1.08996 * 109.47082 * 60.00335 * 18 16 14 28 28 H 1.08995 * 109.47118 * 299.99923 * 18 16 14 29 29 H 1.09001 * 109.47224 * 180.02562 * 19 18 16 30 30 H 1.09003 * 109.47440 * 60.00274 * 19 18 16 31 31 H 1.09004 * 109.47172 * 180.02562 * 20 19 18 32 32 H 1.08998 * 109.47052 * 300.00008 * 20 19 18 33 33 H 1.08998 * 109.47312 * 59.99939 * 21 20 19 34 34 H 1.08997 * 109.47399 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.47224 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.47440 * 299.99725 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3842 2.1107 -1.3941 5 1 1.5055 2.6180 0.8084 6 1 3.5968 1.4107 0.5859 7 6 2.0089 -1.2033 -0.0005 8 1 1.5160 -2.1116 0.3134 9 7 3.3200 -1.2376 -0.3997 10 6 3.7652 -0.4110 -1.5242 11 6 3.7508 -1.2320 -2.7878 12 8 3.4045 -2.3891 -2.7525 13 8 4.1225 -0.6780 -3.9526 14 6 4.1994 -2.0318 0.2426 15 8 5.3755 -1.9968 -0.0517 16 6 3.7212 -2.9634 1.3264 17 9 2.8542 -2.2765 2.1829 18 6 2.9832 -4.1452 0.6941 19 6 2.4983 -5.0913 1.7945 20 6 3.6995 -5.6066 2.5898 21 6 4.4375 -4.4249 3.2221 22 6 4.9223 -3.4788 2.1218 23 1 -0.4850 0.8400 0.0004 24 1 3.0948 0.4409 -1.6368 25 1 4.7776 -0.0542 -1.3344 26 1 4.0964 -1.2440 -4.7361 27 1 3.6587 -4.6804 0.0269 28 1 2.1278 -3.7780 0.1272 29 1 1.9730 -5.9334 1.3441 30 1 1.8229 -4.5563 2.4621 31 1 3.3540 -6.2810 3.3734 32 1 4.3748 -6.1416 1.9222 33 1 3.7621 -3.8899 3.8897 34 1 5.2934 -4.7920 3.7884 35 1 5.4477 -2.6366 2.5722 36 1 5.5978 -4.0138 1.4541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:55 Heat of formation + Delta-G solvation = -191.653052 kcal Electronic energy + Delta-G solvation = -22998.483849 eV Core-core repulsion = 19396.408540 eV Total energy + Delta-G solvation = -3602.075309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.63008 -41.63122 -40.40593 -38.32119 -37.25424 -36.78418 -34.04582 -32.03544 -31.71299 -29.81835 -27.05860 -24.58970 -23.78299 -22.93565 -21.16958 -20.48192 -19.57018 -19.30804 -18.46827 -17.62013 -17.22463 -16.83527 -16.69021 -16.41965 -16.02267 -15.61333 -15.20964 -14.76162 -14.65741 -14.34337 -14.29323 -14.10857 -13.63605 -13.35826 -13.25387 -13.01127 -12.88962 -12.66613 -12.61633 -12.35207 -12.05414 -11.96557 -11.77997 -11.60409 -11.46646 -11.15088 -10.93176 -10.47017 -9.96138 -8.52441 -6.19462 1.09579 1.13947 1.25779 1.39658 1.44940 1.92302 2.13345 2.42275 2.92640 3.49366 3.59177 3.69355 3.77367 3.88657 4.08522 4.18971 4.22174 4.31272 4.37904 4.44194 4.49568 4.69379 4.86213 5.04553 5.10763 5.19628 5.19991 5.20992 5.30111 5.33268 5.52360 5.54350 5.97808 6.12955 6.80574 6.93620 7.15335 7.45292 8.60966 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.008747 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.299304 B = 3200.345207 C = 3861.082592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.911 3.089 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.339 4.339 8 H 0.092 0.908 9 N -0.449 5.449 10 C 0.093 3.907 11 C 0.474 3.526 12 O -0.533 6.533 13 O -0.506 6.506 14 C 0.466 3.534 15 O -0.594 6.594 16 C 0.127 3.873 17 F -0.194 7.194 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.118 4.118 23 H 0.282 0.718 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.427 0.573 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 -4.907 0.905 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.177 4.177 3 Si 0.734 3.266 4 H -0.169 1.169 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.109 0.891 9 N -0.169 5.169 10 C -0.032 4.032 11 C 0.315 3.685 12 O -0.422 6.422 13 O -0.319 6.319 14 C 0.255 3.745 15 O -0.478 6.478 16 C 0.106 3.894 17 F -0.175 7.175 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.157 4.157 23 H 0.092 0.908 24 H 0.131 0.869 25 H 0.144 0.856 26 H 0.288 0.712 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.255 -4.820 1.108 8.780 hybrid contribution -0.354 0.785 -0.783 1.164 sum 6.901 -4.035 0.326 8.001 Atomic orbital electron populations 1.69788 1.07445 1.29319 1.46248 1.25893 0.95760 1.01108 0.94963 0.86370 0.80124 0.80243 0.79831 1.16902 1.20281 1.18387 1.19095 0.84655 0.96627 1.46261 0.89053 1.43464 1.09510 1.39431 1.24496 1.21476 1.04395 0.94083 0.83234 1.24004 0.72029 0.86534 0.85898 1.90653 1.44750 1.19798 1.86961 1.84477 1.79893 1.48863 1.18691 1.21378 0.85204 0.83614 0.84329 1.90526 1.17166 1.70740 1.69397 1.20898 0.90584 0.90488 0.87444 1.92872 1.71798 1.81432 1.71376 1.22013 1.00337 0.95050 0.99379 1.21505 0.98833 0.98241 0.96490 1.21577 0.96359 0.97372 0.99869 1.21557 1.01176 0.95887 0.96590 1.21911 0.94846 1.00516 0.98388 0.90830 0.86930 0.85643 0.71153 0.90606 0.92337 0.89881 0.92315 0.89239 0.90971 0.92032 0.88732 0.91570 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.64 13.96 21.66 0.30 -49.34 16 2 C 0.03 1.44 5.31 84.93 0.45 1.89 16 3 Si 0.91 39.84 24.90 68.60 1.71 41.55 16 4 H -0.24 -9.55 6.70 99.48 0.67 -8.88 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.34 -18.16 7.72 84.04 0.65 -17.51 16 8 H 0.09 5.31 5.21 -2.91 -0.02 5.29 16 9 N -0.45 -22.05 1.72 -639.59 -1.10 -23.15 16 10 C 0.09 4.00 4.55 85.63 0.39 4.39 16 11 C 0.47 19.30 8.36 71.24 0.60 19.90 16 12 O -0.53 -25.01 17.05 21.96 0.37 -24.64 16 13 O -0.51 -15.15 13.42 -51.42 -0.69 -15.84 16 14 C 0.47 22.21 6.50 87.66 0.57 22.78 16 15 O -0.59 -29.02 15.63 -3.07 -0.05 -29.07 16 16 C 0.13 5.27 0.72 -11.54 -0.01 5.26 16 17 F -0.19 -8.91 13.55 44.97 0.61 -8.30 16 18 C -0.13 -4.95 4.77 30.59 0.15 -4.80 16 19 C -0.11 -3.35 5.80 30.59 0.18 -3.17 16 20 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 21 C -0.11 -2.95 5.80 30.59 0.18 -2.77 16 22 C -0.12 -3.97 4.39 30.59 0.13 -3.84 16 23 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.11 4.76 3.50 -2.39 -0.01 4.75 16 25 H 0.13 4.99 7.54 -2.39 -0.02 4.97 16 26 H 0.43 8.31 9.10 -74.06 -0.67 7.64 16 27 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.06 2.62 6.03 -2.39 -0.01 2.61 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.88 7.80 -2.39 -0.02 1.86 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.69 7.80 -2.39 -0.02 1.67 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16 Total: -1.00 -67.53 293.10 5.03 -62.51 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.41 Total: 26.65 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 3.46 Total: 19.63 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -0.80 Total: -72.49 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -0.36 Total: -69.54 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.61 Total: -8.30 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.71 Total: 41.55 kcal Total: -67.53 5.03 -62.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.145 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds