Wall clock time and date at job start Mon Mar 30 2020 01:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47090 * 274.97480 * 3 2 1 5 5 H 1.48499 * 109.47214 * 34.98051 * 3 2 1 6 6 H 1.48499 * 109.46919 * 154.97685 * 3 2 1 7 7 C 1.38948 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99534 * 154.49174 * 7 2 1 9 9 N 1.37091 * 120.00076 * 334.49938 * 7 2 1 10 10 C 1.46506 * 120.00327 * 353.74852 * 9 7 2 11 11 C 1.50697 * 109.47006 * 85.92368 * 10 9 7 12 12 O 1.20831 * 119.99970 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.34776 * 120.00029 * 173.74742 * 9 7 2 15 15 O 1.21291 * 119.99910 * 4.17532 * 14 9 7 16 16 C 1.50706 * 120.00148 * 184.17501 * 14 9 7 17 17 H 1.09006 * 109.46759 * 324.76373 * 16 14 9 18 18 C 1.53001 * 109.47189 * 204.76794 * 16 14 9 19 19 C 1.52998 * 109.47012 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47301 * 59.99714 * 19 18 16 21 21 C 1.52996 * 109.46846 * 299.99962 * 20 19 18 22 22 H 1.08996 * 109.47422 * 300.00226 * 21 20 19 23 23 F 1.39904 * 109.46892 * 180.02562 * 21 20 19 24 24 C 1.52994 * 109.47436 * 60.00078 * 21 20 19 25 25 H 0.97000 * 120.00274 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47270 * 205.92973 * 10 9 7 27 27 H 1.09007 * 109.46730 * 325.93135 * 10 9 7 28 28 H 0.96704 * 116.99949 * 179.97438 * 13 11 10 29 29 H 1.09002 * 109.47341 * 59.99428 * 18 16 14 30 30 H 1.09004 * 109.46505 * 299.99796 * 18 16 14 31 31 H 1.08996 * 109.46729 * 299.99633 * 19 18 16 32 32 H 1.09007 * 109.46864 * 179.97438 * 19 18 16 33 33 H 1.08999 * 109.46865 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.46738 * 59.99747 * 20 19 18 35 35 H 1.09007 * 109.47417 * 59.99619 * 24 21 20 36 36 H 1.09001 * 109.47547 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3904 2.1072 -1.3948 5 1 1.5020 2.6201 0.8026 6 1 3.5942 1.4122 0.5922 7 6 2.0089 -1.2033 0.0005 8 1 3.0099 -1.2490 -0.4022 9 7 1.4236 -2.3325 0.5122 10 6 0.1233 -2.2448 1.1815 11 6 -0.9768 -2.3380 0.1558 12 8 -0.7029 -2.4653 -1.0141 13 8 -2.2610 -2.2798 0.5420 14 6 2.0444 -3.5235 0.3995 15 8 3.1540 -3.5854 -0.0865 16 6 1.3600 -4.7783 0.8772 17 1 0.7679 -4.5538 1.7645 18 6 2.4126 -5.8343 1.2203 19 6 1.7176 -7.1084 1.7048 20 6 0.8017 -7.6410 0.6010 21 6 -0.2508 -6.5849 0.2580 22 1 -0.8432 -6.3607 1.1450 23 9 -1.0887 -7.0721 -0.7509 24 6 0.4440 -5.3108 -0.2265 25 1 -0.4850 0.8400 -0.0004 26 1 0.0257 -3.0633 1.8945 27 1 0.0493 -1.2932 1.7081 28 1 -2.9315 -2.3435 -0.1519 29 1 3.0654 -5.4547 2.0064 30 1 3.0047 -6.0587 0.3331 31 1 1.1253 -6.8842 2.5918 32 1 2.4676 -7.8609 1.9488 33 1 0.3070 -8.5489 0.9460 34 1 1.3942 -7.8650 -0.2861 35 1 1.0365 -5.5349 -1.1136 36 1 -0.3058 -4.5586 -0.4713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:49 Heat of formation + Delta-G solvation = -179.373197 kcal Electronic energy + Delta-G solvation = -22758.092073 eV Core-core repulsion = 19156.549258 eV Total energy + Delta-G solvation = -3601.542815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.42982 -39.79063 -38.55245 -36.87579 -35.22800 -34.44155 -31.98198 -30.67013 -29.85990 -27.72352 -25.25661 -22.98825 -22.32292 -21.08729 -20.22214 -18.68508 -17.12823 -17.02111 -16.43521 -15.85321 -15.71563 -15.47288 -14.85923 -14.58680 -14.40715 -14.30821 -14.05824 -13.43067 -13.12836 -12.79214 -12.42034 -12.25246 -11.98786 -11.78007 -11.64213 -11.26932 -11.09190 -10.94907 -10.85206 -10.53057 -10.47831 -10.35538 -10.32714 -10.22055 -9.84084 -9.58199 -9.04383 -8.48301 -8.01987 -6.53139 -3.87814 3.09686 3.21796 3.29392 3.45772 3.62540 4.01307 4.22320 4.54357 4.61170 4.77377 4.83055 4.99390 5.09261 5.23947 5.31671 5.46073 5.52775 5.55399 5.66573 5.79739 5.91275 6.05925 6.10445 6.17238 6.28889 6.39925 6.44873 6.55666 6.58859 6.66314 7.48858 7.56524 7.90939 8.31848 9.04069 9.08030 9.27838 9.79160 10.55930 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.007022 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.588895 B = 3986.358581 C = 4792.369330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.030 3.970 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.111 0.889 9 N -0.430 5.430 10 C 0.143 3.857 11 C 0.495 3.505 12 O -0.501 6.501 13 O -0.537 6.537 14 C 0.461 3.539 15 O -0.575 6.575 16 C -0.099 4.099 17 H 0.081 0.919 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.144 4.144 21 C 0.093 3.907 22 H 0.081 0.919 23 F -0.217 7.217 24 C -0.137 4.137 25 H 0.272 0.728 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.391 0.609 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -9.172 6.408 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.753 3.247 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.128 0.872 9 N -0.149 5.149 10 C 0.016 3.984 11 C 0.336 3.664 12 O -0.387 6.387 13 O -0.348 6.348 14 C 0.250 3.750 15 O -0.458 6.458 16 C -0.121 4.121 17 H 0.099 0.901 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.182 4.182 21 C 0.057 3.943 22 H 0.099 0.901 23 F -0.198 7.198 24 C -0.175 4.175 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.857 -9.047 6.111 11.285 hybrid contribution -0.505 1.015 -0.711 1.338 sum -3.362 -8.032 5.400 10.246 Atomic orbital electron populations 1.69681 1.06142 1.27875 1.48326 1.25155 0.95187 0.99967 0.96863 0.85910 0.79715 0.80685 0.78397 1.20507 1.20701 1.19237 1.19729 1.00386 0.84130 1.38775 0.87170 1.43566 1.14715 1.06999 1.49611 1.20856 0.81349 1.04294 0.91871 1.23588 0.81833 0.70558 0.90461 1.90604 1.83100 1.45175 1.19807 1.84510 1.18163 1.86890 1.45208 1.19813 0.87629 0.83560 0.84041 1.90520 1.20576 1.85704 1.49039 1.21186 0.97340 0.95103 0.98494 0.90083 1.21388 0.97048 0.93252 1.02269 1.21503 0.98497 0.97744 0.97533 1.22133 0.97576 0.97917 1.00555 1.21603 0.90025 0.94262 0.88406 0.90139 1.92792 1.73635 1.89515 1.63846 1.22126 0.99714 0.96541 0.99139 0.91745 0.90400 0.85773 0.75239 0.91339 0.90660 0.91726 0.91221 0.91161 0.90717 0.90339 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.59 8.63 55.50 0.48 -22.12 16 2 C 0.03 0.78 4.93 -17.47 -0.09 0.70 16 3 Si 0.93 20.34 29.62 -169.99 -5.04 15.30 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.27 9.36 -14.94 -0.14 -8.41 16 8 H 0.11 3.18 7.29 -52.49 -0.38 2.80 16 9 N -0.43 -10.59 2.14 -116.09 -0.25 -10.84 16 10 C 0.14 3.03 5.14 -5.19 -0.03 3.01 16 11 C 0.50 10.82 4.85 36.00 0.17 11.00 16 12 O -0.50 -12.87 15.25 -18.75 -0.29 -13.15 16 13 O -0.54 -9.63 13.42 -39.25 -0.53 -10.16 16 14 C 0.46 10.84 6.73 -10.98 -0.07 10.77 16 15 O -0.58 -15.47 15.68 5.55 0.09 -15.39 16 16 C -0.10 -1.76 1.88 -91.77 -0.17 -1.93 16 17 H 0.08 1.25 5.96 -51.93 -0.31 0.94 16 18 C -0.10 -1.54 4.73 -26.73 -0.13 -1.67 16 19 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 20 C -0.14 -1.72 5.66 -26.73 -0.15 -1.87 16 21 C 0.09 1.33 3.87 -26.74 -0.10 1.23 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 F -0.22 -3.51 17.08 2.25 0.04 -3.47 16 24 C -0.14 -2.42 4.92 -26.74 -0.13 -2.55 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.08 1.33 5.75 -51.93 -0.30 1.03 16 27 H 0.12 2.74 6.46 -51.93 -0.34 2.41 16 28 H 0.39 5.52 9.10 45.56 0.41 5.94 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.26 7.87 -51.93 -0.41 0.86 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.68 4.90 -51.93 -0.25 1.43 16 LS Contribution 293.79 15.07 4.43 4.43 Total: -1.00 -32.47 293.79 -5.73 -38.20 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.67 Total: 8.41 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.00 Total: 8.79 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.23 Total: -32.96 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.73 Total: -38.70 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.47 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.04 Total: 15.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.47 -5.73 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.176 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds