Wall clock time and date at job start Mon Mar 30 2020 01:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47090 * 274.97480 * 3 2 1 5 5 H 1.48499 * 109.47214 * 34.98051 * 3 2 1 6 6 H 1.48499 * 109.46919 * 154.97685 * 3 2 1 7 7 C 1.38948 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99534 * 154.49174 * 7 2 1 9 9 N 1.37091 * 120.00076 * 334.49938 * 7 2 1 10 10 C 1.46506 * 120.00327 * 353.74852 * 9 7 2 11 11 C 1.50697 * 109.47006 * 85.92368 * 10 9 7 12 12 O 1.20831 * 119.99970 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.34776 * 120.00029 * 173.74742 * 9 7 2 15 15 O 1.21291 * 119.99910 * 4.17532 * 14 9 7 16 16 C 1.50706 * 120.00148 * 184.17501 * 14 9 7 17 17 H 1.09006 * 109.46759 * 324.76373 * 16 14 9 18 18 C 1.53001 * 109.47189 * 204.76794 * 16 14 9 19 19 C 1.52998 * 109.47012 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47301 * 59.99714 * 19 18 16 21 21 C 1.52996 * 109.46846 * 299.99962 * 20 19 18 22 22 H 1.08996 * 109.47422 * 300.00226 * 21 20 19 23 23 F 1.39904 * 109.46892 * 180.02562 * 21 20 19 24 24 C 1.52994 * 109.47436 * 60.00078 * 21 20 19 25 25 H 0.97000 * 120.00274 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47270 * 205.92973 * 10 9 7 27 27 H 1.09007 * 109.46730 * 325.93135 * 10 9 7 28 28 H 0.96704 * 116.99949 * 179.97438 * 13 11 10 29 29 H 1.09002 * 109.47341 * 59.99428 * 18 16 14 30 30 H 1.09004 * 109.46505 * 299.99796 * 18 16 14 31 31 H 1.08996 * 109.46729 * 299.99633 * 19 18 16 32 32 H 1.09007 * 109.46864 * 179.97438 * 19 18 16 33 33 H 1.08999 * 109.46865 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.46738 * 59.99747 * 20 19 18 35 35 H 1.09007 * 109.47417 * 59.99619 * 24 21 20 36 36 H 1.09001 * 109.47547 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3904 2.1072 -1.3948 5 1 1.5020 2.6201 0.8026 6 1 3.5942 1.4122 0.5922 7 6 2.0089 -1.2033 0.0005 8 1 3.0099 -1.2490 -0.4022 9 7 1.4236 -2.3325 0.5122 10 6 0.1233 -2.2448 1.1815 11 6 -0.9768 -2.3380 0.1558 12 8 -0.7029 -2.4653 -1.0141 13 8 -2.2610 -2.2798 0.5420 14 6 2.0444 -3.5235 0.3995 15 8 3.1540 -3.5854 -0.0865 16 6 1.3600 -4.7783 0.8772 17 1 0.7679 -4.5538 1.7645 18 6 2.4126 -5.8343 1.2203 19 6 1.7176 -7.1084 1.7048 20 6 0.8017 -7.6410 0.6010 21 6 -0.2508 -6.5849 0.2580 22 1 -0.8432 -6.3607 1.1450 23 9 -1.0887 -7.0721 -0.7509 24 6 0.4440 -5.3108 -0.2265 25 1 -0.4850 0.8400 -0.0004 26 1 0.0257 -3.0633 1.8945 27 1 0.0493 -1.2932 1.7081 28 1 -2.9315 -2.3435 -0.1519 29 1 3.0654 -5.4547 2.0064 30 1 3.0047 -6.0587 0.3331 31 1 1.1253 -6.8842 2.5918 32 1 2.4676 -7.8609 1.9488 33 1 0.3070 -8.5489 0.9460 34 1 1.3942 -7.8650 -0.2861 35 1 1.0365 -5.5349 -1.1136 36 1 -0.3058 -4.5586 -0.4713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:48 Heat of formation + Delta-G solvation = -201.029861 kcal Electronic energy + Delta-G solvation = -22759.031177 eV Core-core repulsion = 19156.549258 eV Total energy + Delta-G solvation = -3602.481918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.63007 -41.49039 -40.20133 -38.28298 -36.97643 -36.26835 -33.86650 -32.00807 -31.05958 -29.49991 -27.08828 -24.41927 -23.50810 -22.76403 -21.45644 -20.28958 -18.98595 -18.73073 -18.13552 -17.37100 -17.16217 -16.81389 -16.39822 -16.07229 -16.03608 -15.81837 -15.57675 -14.78637 -14.63895 -14.43664 -13.81169 -13.65724 -13.52122 -13.45545 -13.33240 -12.77468 -12.55493 -12.47875 -12.22353 -12.11034 -12.06986 -11.95495 -11.57255 -11.49913 -11.44484 -11.11207 -10.93666 -10.31885 -9.94846 -8.49681 -5.91869 1.31557 1.40642 1.54436 1.72552 1.88900 2.24030 2.53837 2.89178 3.06741 3.51519 3.53502 3.66038 3.82568 4.00341 4.06577 4.09526 4.25726 4.37321 4.46557 4.58461 4.61863 4.76722 4.93437 4.95808 5.07304 5.09497 5.19987 5.23757 5.29633 5.44165 5.49894 5.96059 6.02406 6.36390 7.08299 7.31060 7.51310 7.91404 8.56994 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.007022 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.588895 B = 3986.358581 C = 4792.369330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.285 1.285 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.344 4.344 8 H 0.077 0.923 9 N -0.442 5.442 10 C 0.139 3.861 11 C 0.503 3.497 12 O -0.547 6.547 13 O -0.521 6.521 14 C 0.447 3.553 15 O -0.624 6.624 16 C -0.088 4.088 17 H 0.113 0.887 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.141 4.141 21 C 0.095 3.905 22 H 0.113 0.887 23 F -0.229 7.229 24 C -0.133 4.133 25 H 0.276 0.724 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.411 0.589 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -10.109 8.692 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.211 1.211 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.095 0.905 9 N -0.160 5.160 10 C 0.014 3.986 11 C 0.345 3.655 12 O -0.436 6.436 13 O -0.333 6.333 14 C 0.238 3.762 15 O -0.510 6.510 16 C -0.109 4.109 17 H 0.131 0.869 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.178 4.178 21 C 0.059 3.941 22 H 0.131 0.869 23 F -0.210 7.210 24 C -0.172 4.172 25 H 0.087 0.913 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.270 0.730 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.445 -9.986 8.422 13.799 hybrid contribution -0.090 1.339 -1.477 1.996 sum -4.535 -8.648 6.944 11.982 Atomic orbital electron populations 1.69752 1.06722 1.28718 1.47388 1.25842 0.96023 1.02127 0.95769 0.85026 0.78595 0.77175 0.78066 1.21107 1.18601 1.19542 1.19578 0.99944 0.86360 1.41264 0.90514 1.43710 1.15989 1.06791 1.49551 1.21004 0.79826 1.05703 0.92053 1.23593 0.82892 0.69299 0.89682 1.90599 1.84000 1.47356 1.21655 1.84435 1.17156 1.86034 1.45659 1.20940 0.87216 0.85015 0.83071 1.90474 1.22823 1.86647 1.51073 1.21183 0.97895 0.92674 0.99198 0.86897 1.21400 0.96485 0.94628 1.01287 1.21480 0.98921 0.95784 0.97897 1.22148 0.96961 0.98254 1.00462 1.21753 0.90681 0.93004 0.88614 0.86924 1.92771 1.74022 1.89479 1.64737 1.22050 0.98845 0.98102 0.98199 0.91316 0.85908 0.86561 0.72979 0.91255 0.93391 0.88963 0.88880 0.88092 0.92020 0.93484 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.29 8.63 21.66 0.19 -45.11 16 2 C 0.00 0.21 4.93 84.93 0.42 0.62 16 3 Si 0.99 42.08 29.62 68.60 2.03 44.11 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.34 -19.51 9.36 84.04 0.79 -18.72 16 8 H 0.08 4.75 7.29 -2.91 -0.02 4.73 16 9 N -0.44 -22.28 2.14 -639.59 -1.37 -23.65 16 10 C 0.14 5.80 5.14 85.63 0.44 6.24 16 11 C 0.50 21.56 4.85 71.23 0.35 21.91 16 12 O -0.55 -28.45 15.25 21.95 0.33 -28.12 16 13 O -0.52 -17.50 13.42 -51.38 -0.69 -18.19 16 14 C 0.45 21.67 6.73 87.66 0.59 22.26 16 15 O -0.62 -35.50 15.68 -3.06 -0.05 -35.55 16 16 C -0.09 -3.04 1.88 -11.54 -0.02 -3.06 16 17 H 0.11 3.11 5.96 -2.38 -0.01 3.10 16 18 C -0.10 -2.91 4.73 30.59 0.14 -2.77 16 19 C -0.10 -1.94 5.92 30.59 0.18 -1.76 16 20 C -0.14 -2.89 5.66 30.59 0.17 -2.71 16 21 C 0.10 2.46 3.87 30.59 0.12 2.58 16 22 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 23 F -0.23 -7.01 17.08 44.97 0.77 -6.24 16 24 C -0.13 -4.68 4.92 30.59 0.15 -4.53 16 25 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.12 3.86 5.75 -2.39 -0.01 3.84 16 27 H 0.12 5.03 6.46 -2.38 -0.02 5.01 16 28 H 0.41 10.66 9.10 -74.05 -0.67 9.98 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.64 7.87 -2.38 -0.02 1.62 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 2.44 4.90 -2.39 -0.01 2.43 16 Total: -1.00 -74.79 293.79 4.99 -69.80 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.45 Total: 22.89 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 3.33 Total: 20.06 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.18 Total: -68.75 kcal Atomic # 8 Polarization: -81.45 SS G_CDS: -0.40 Total: -81.86 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.77 Total: -6.24 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.79 4.99 -69.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.232 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds