Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 119.99781 * 2 1 4 4 H 1.48495 * 109.47033 * 240.00298 * 3 2 1 5 5 H 1.48495 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46607 * 120.00394 * 3 2 1 7 7 C 1.38952 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00036 * 166.59284 * 7 2 1 9 9 N 1.37101 * 119.99818 * 346.58972 * 7 2 1 10 10 C 1.46499 * 120.00205 * 340.18499 * 9 7 2 11 11 C 1.50700 * 109.47393 * 92.30062 * 10 9 7 12 12 O 1.20827 * 119.99879 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99675 * 160.18231 * 9 7 2 15 15 O 1.21292 * 119.99981 * 182.36438 * 14 9 7 16 16 C 1.50696 * 119.99930 * 2.36637 * 14 9 7 17 17 H 1.09000 * 109.47300 * 334.92619 * 16 14 9 18 18 C 1.52998 * 109.47320 * 94.93428 * 16 14 9 19 19 C 1.52999 * 109.47166 * 179.97438 * 18 16 14 20 20 C 1.52993 * 109.47178 * 299.99789 * 19 18 16 21 21 C 1.52994 * 109.47228 * 60.00009 * 20 19 18 22 22 H 1.09000 * 109.47399 * 60.00308 * 21 20 19 23 23 F 1.39907 * 109.47221 * 180.02562 * 21 20 19 24 24 C 1.53002 * 109.47335 * 299.99877 * 21 20 19 25 25 H 0.96999 * 120.00163 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47006 * 212.29979 * 10 9 7 27 27 H 1.09005 * 109.46945 * 332.30136 * 10 9 7 28 28 H 0.96696 * 116.99472 * 179.97438 * 13 11 10 29 29 H 1.09008 * 109.46596 * 299.99211 * 18 16 14 30 30 H 1.09000 * 109.47595 * 59.99371 * 18 16 14 31 31 H 1.09002 * 109.46890 * 179.97438 * 19 18 16 32 32 H 1.09008 * 109.46965 * 59.99936 * 19 18 16 33 33 H 1.09006 * 109.46932 * 299.99548 * 20 19 18 34 34 H 1.09008 * 109.46918 * 180.02562 * 20 19 18 35 35 H 1.08992 * 109.46912 * 300.00376 * 24 21 20 36 36 H 1.08998 * 109.47365 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0667 -1.2160 -0.2174 9 7 1.3514 -2.3746 0.2743 10 6 0.0669 -2.3458 0.9782 11 6 -1.0556 -2.3033 -0.0264 12 8 -0.8081 -2.2980 -1.2090 13 8 -2.3305 -2.2722 0.3927 14 6 1.8868 -3.5525 -0.1031 15 8 1.2851 -4.5855 0.1017 16 6 3.2330 -3.5860 -0.7796 17 1 3.4165 -2.6305 -1.2711 18 6 4.3222 -3.8402 0.2643 19 6 5.6889 -3.8748 -0.4226 20 6 5.7083 -4.9961 -1.4633 21 6 4.6191 -4.7420 -2.5072 22 1 4.8029 -3.7868 -2.9990 23 9 4.6365 -5.7677 -3.4585 24 6 3.2524 -4.7074 -1.8204 25 1 -0.4850 0.8400 0.0004 26 1 -0.0301 -3.2401 1.5938 27 1 0.0202 -1.4609 1.6129 28 1 -3.0159 -2.2451 -0.2888 29 1 4.3081 -3.0414 1.0059 30 1 4.1386 -4.7956 0.7558 31 1 6.4649 -4.0554 0.3212 32 1 5.8727 -2.9194 -0.9143 33 1 5.5246 -5.9514 -0.9715 34 1 6.6822 -5.0210 -1.9524 35 1 3.0687 -5.6626 -1.3286 36 1 2.4765 -4.5259 -2.5640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = -206.603868 kcal Electronic energy + Delta-G solvation = -22375.621513 eV Core-core repulsion = 18772.897888 eV Total energy + Delta-G solvation = -3602.723625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.61082 -41.36617 -40.30596 -38.21863 -36.95592 -36.37693 -33.48089 -32.17546 -31.15226 -29.53208 -26.76672 -24.56870 -23.46791 -22.54204 -21.22357 -20.83036 -18.92403 -18.71537 -18.11691 -17.35992 -16.90638 -16.70328 -16.28812 -16.14951 -15.90929 -15.82710 -15.39177 -15.23195 -14.45157 -14.39424 -13.77502 -13.63911 -13.42464 -13.30769 -13.23698 -12.71658 -12.64096 -12.48960 -12.18235 -12.09223 -12.00807 -11.91156 -11.58741 -11.54861 -11.38080 -11.16250 -10.95622 -10.31103 -9.87795 -8.36848 -5.97298 1.45047 1.50616 1.60290 1.78494 1.88480 2.28552 2.54215 2.87063 3.16512 3.56086 3.67332 3.70747 3.94203 4.14451 4.15651 4.34909 4.40994 4.46081 4.50439 4.62010 4.70202 4.79183 4.92222 5.01885 5.10942 5.15904 5.20219 5.24435 5.31674 5.43637 5.52377 5.72413 5.95505 6.32689 7.07741 7.41211 7.49621 7.87728 8.70666 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.007141 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.274049 B = 3920.282163 C = 4850.396074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.346 4.346 8 H 0.123 0.877 9 N -0.440 5.440 10 C 0.156 3.844 11 C 0.506 3.494 12 O -0.553 6.553 13 O -0.525 6.525 14 C 0.463 3.537 15 O -0.635 6.635 16 C -0.082 4.082 17 H 0.098 0.902 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.137 4.137 21 C 0.093 3.907 22 H 0.099 0.901 23 F -0.228 7.228 24 C -0.121 4.121 25 H 0.271 0.729 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -1.435 1.262 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.473 4.473 8 H 0.140 0.860 9 N -0.158 5.158 10 C 0.030 3.970 11 C 0.349 3.651 12 O -0.442 6.442 13 O -0.337 6.337 14 C 0.254 3.746 15 O -0.523 6.523 16 C -0.103 4.103 17 H 0.116 0.884 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.175 4.175 21 C 0.057 3.943 22 H 0.117 0.883 23 F -0.209 7.209 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.137 -1.805 1.335 9.409 hybrid contribution -1.170 0.810 -0.754 1.610 sum 7.968 -0.995 0.580 8.051 Atomic orbital electron populations 1.69707 1.07604 1.28432 1.48664 1.26200 0.96075 1.03213 0.95447 0.84871 0.77515 0.75738 0.79543 1.19193 1.21740 1.18149 1.20085 0.95023 0.83056 1.49148 0.85994 1.43652 1.16718 1.06292 1.49166 1.20431 0.81218 1.03252 0.92077 1.23656 0.83052 0.68837 0.89569 1.90514 1.84696 1.48136 1.20887 1.84447 1.17283 1.86515 1.45456 1.20975 0.89758 0.82795 0.81101 1.90495 1.65908 1.34527 1.61361 1.20987 0.92212 1.00219 0.96884 0.88435 1.21467 0.93705 1.02120 0.96833 1.21457 0.95765 0.98938 0.98040 1.22115 0.98417 1.00559 0.96387 1.21712 0.95715 0.89051 0.87778 0.88285 1.92763 1.97623 1.63277 1.67260 1.21852 0.96997 0.99414 0.97685 0.91897 0.89733 0.86278 0.73134 0.90877 0.92399 0.88504 0.90134 0.91117 0.88466 0.91694 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.12 8.51 21.66 0.18 -45.93 16 2 C -0.01 -0.41 5.06 84.93 0.43 0.02 16 3 Si 1.00 37.44 29.57 68.60 2.03 39.47 16 4 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.29 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.35 -16.46 8.91 84.04 0.75 -15.71 16 8 H 0.12 5.19 6.14 -2.92 -0.02 5.17 16 9 N -0.44 -21.74 2.12 -639.60 -1.36 -23.10 16 10 C 0.16 7.53 5.19 85.63 0.44 7.98 16 11 C 0.51 25.26 6.25 71.24 0.45 25.70 16 12 O -0.55 -31.65 16.59 21.96 0.36 -31.28 16 13 O -0.52 -21.31 13.42 -51.42 -0.69 -22.00 16 14 C 0.46 22.22 6.58 87.66 0.58 22.80 16 15 O -0.63 -34.02 15.91 -3.07 -0.05 -34.06 16 16 C -0.08 -3.06 1.87 -11.54 -0.02 -3.09 16 17 H 0.10 3.64 6.14 -2.39 -0.01 3.62 16 18 C -0.10 -3.03 5.19 30.59 0.16 -2.87 16 19 C -0.10 -2.16 5.92 30.59 0.18 -1.98 16 20 C -0.14 -2.95 5.66 30.59 0.17 -2.77 16 21 C 0.09 2.59 3.88 30.59 0.12 2.71 16 22 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 23 F -0.23 -7.11 17.08 44.97 0.77 -6.34 16 24 C -0.12 -4.37 4.60 30.60 0.14 -4.23 16 25 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 26 H 0.08 3.89 7.53 -2.39 -0.02 3.87 16 27 H 0.12 5.68 6.61 -2.38 -0.02 5.66 16 28 H 0.41 12.89 9.10 -74.06 -0.67 12.22 16 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 2.50 7.85 -2.39 -0.02 2.49 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.61 300.45 5.08 -62.53 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.44 Total: 32.15 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 3.40 Total: 28.56 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -1.17 Total: -69.04 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -0.37 Total: -87.35 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.77 Total: -6.34 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -67.61 5.08 -62.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.074 kcal (2) G-P(sol) polarization free energy of solvation -67.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds