Wall clock time and date at job start Mon Mar 30 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46565 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47346 * 299.99627 * 3 2 1 6 6 H 1.48496 * 109.47324 * 60.00188 * 3 2 1 7 7 C 1.38952 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99673 * 170.60841 * 7 2 1 9 9 N 1.37092 * 120.00017 * 350.60432 * 7 2 1 10 10 C 1.46502 * 120.00346 * 342.94145 * 9 7 2 11 11 C 1.50697 * 109.47133 * 97.15069 * 10 9 7 12 12 O 1.20828 * 119.99560 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00395 * 180.02562 * 11 10 9 14 14 C 1.34777 * 120.00186 * 162.94855 * 9 7 2 15 15 O 1.21292 * 120.00322 * 182.61564 * 14 9 7 16 16 C 1.50701 * 119.99712 * 2.60885 * 14 9 7 17 17 H 1.09000 * 109.47206 * 312.77545 * 16 14 9 18 18 C 1.53000 * 109.47232 * 192.76908 * 16 14 9 19 19 C 1.52996 * 109.47346 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.46807 * 60.00253 * 19 18 16 21 21 C 1.52999 * 109.47105 * 299.99622 * 20 19 18 22 22 H 1.09000 * 109.46957 * 179.97438 * 21 20 19 23 23 F 1.39891 * 109.47761 * 300.00122 * 21 20 19 24 24 C 1.53003 * 109.46976 * 72.77127 * 16 14 9 25 25 H 0.97004 * 119.99958 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47598 * 217.15260 * 10 9 7 27 27 H 1.09003 * 109.47069 * 337.15656 * 10 9 7 28 28 H 0.96699 * 117.00386 * 180.02562 * 13 11 10 29 29 H 1.09003 * 109.46669 * 60.00183 * 18 16 14 30 30 H 1.09000 * 109.47545 * 300.00429 * 18 16 14 31 31 H 1.09000 * 109.47260 * 300.00740 * 19 18 16 32 32 H 1.08997 * 109.47367 * 179.97438 * 19 18 16 33 33 H 1.09002 * 109.47264 * 59.99963 * 20 19 18 34 34 H 1.09003 * 109.47196 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47202 * 299.99994 * 24 16 14 36 36 H 1.09000 * 109.46813 * 60.00177 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0780 -1.2096 -0.1532 9 7 1.3371 -2.3827 0.1928 10 6 -0.0126 -2.3722 0.7625 11 6 -1.0276 -2.4462 -0.3489 12 8 -0.6611 -2.5026 -1.4989 13 8 -2.3387 -2.4496 -0.0614 14 6 1.9183 -3.5520 -0.1412 15 8 1.3063 -4.5915 -0.0146 16 6 3.3286 -3.5677 -0.6722 17 1 3.4342 -2.8070 -1.4456 18 6 3.6349 -4.9443 -1.2655 19 6 5.0665 -4.9601 -1.8051 20 6 6.0443 -4.6670 -0.6653 21 6 5.7381 -3.2904 -0.0721 22 1 6.4344 -3.0818 0.7402 23 9 5.8730 -2.3141 -1.0648 24 6 4.3061 -3.2748 0.4680 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1346 -3.2300 1.4237 27 1 -0.1606 -1.4528 1.3290 28 1 -2.9517 -2.4988 -0.8076 29 1 2.9385 -5.1529 -2.0777 30 1 3.5293 -5.7051 -0.4920 31 1 5.1716 -4.1994 -2.5786 32 1 5.2848 -5.9410 -2.2273 33 1 5.9391 -5.4277 0.1083 34 1 7.0642 -4.6778 -1.0498 35 1 4.0879 -2.2941 0.8907 36 1 4.2005 -4.0356 1.2414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:54 Heat of formation + Delta-G solvation = -184.302732 kcal Electronic energy + Delta-G solvation = -22649.419839 eV Core-core repulsion = 19047.663264 eV Total energy + Delta-G solvation = -3601.756576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.30803 -39.51979 -38.49171 -36.55180 -35.09455 -34.55841 -31.61446 -30.85693 -29.97306 -27.69442 -24.91355 -23.00308 -22.33958 -20.81233 -19.49478 -19.00490 -17.36930 -16.90802 -16.23014 -15.60362 -15.52254 -15.11582 -14.97366 -14.39027 -14.36177 -14.30712 -14.04314 -13.03878 -13.00345 -12.80254 -12.23011 -12.03994 -11.83160 -11.60249 -11.39882 -11.30653 -11.17400 -10.93434 -10.75485 -10.55937 -10.44886 -10.26964 -10.12426 -10.00115 -9.69676 -9.62004 -9.04185 -8.47513 -7.98271 -6.46032 -4.03423 3.07611 3.19136 3.23351 3.61614 3.73971 4.02114 4.28331 4.63910 4.78431 4.86113 4.98864 5.05513 5.12095 5.50880 5.52240 5.64568 5.74959 5.81539 5.86797 6.02396 6.22731 6.28315 6.37054 6.42536 6.50207 6.52152 6.67239 6.76439 6.87790 6.89494 7.35564 7.58650 7.65125 8.25416 8.97693 9.19171 9.37273 9.76745 10.57582 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.008397 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.716044 B = 3333.884507 C = 4604.282360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.032 3.968 3 Si 0.929 3.071 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.324 4.324 8 H 0.111 0.889 9 N -0.432 5.432 10 C 0.151 3.849 11 C 0.500 3.500 12 O -0.519 6.519 13 O -0.534 6.534 14 C 0.476 3.524 15 O -0.601 6.601 16 C -0.086 4.086 17 H 0.095 0.905 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.144 4.144 21 C 0.094 3.906 22 H 0.078 0.922 23 F -0.211 7.211 24 C -0.139 4.139 25 H 0.272 0.728 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.389 0.611 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -3.838 2.119 8.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.170 4.170 3 Si 0.755 3.245 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.451 4.451 8 H 0.128 0.872 9 N -0.150 5.150 10 C 0.026 3.974 11 C 0.341 3.659 12 O -0.405 6.405 13 O -0.344 6.344 14 C 0.265 3.735 15 O -0.486 6.486 16 C -0.108 4.108 17 H 0.114 0.886 18 C -0.136 4.136 19 C -0.157 4.157 20 C -0.182 4.182 21 C 0.058 3.942 22 H 0.096 0.904 23 F -0.192 7.192 24 C -0.177 4.177 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.245 0.755 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.020 -4.145 2.180 8.439 hybrid contribution -0.189 1.142 -0.762 1.385 sum 6.831 -3.003 1.419 7.596 Atomic orbital electron populations 1.69768 1.06079 1.27805 1.48903 1.25273 0.95542 1.00013 0.96189 0.85812 0.79678 0.81070 0.77919 1.18968 1.20705 1.20524 1.19927 0.93464 0.82602 1.49104 0.87171 1.43445 1.11879 1.05787 1.53930 1.20718 0.80420 1.04400 0.91897 1.23875 0.81004 0.69558 0.91419 1.90557 1.80461 1.46272 1.23204 1.84538 1.19238 1.86986 1.43677 1.20150 0.88874 0.83550 0.80933 1.90523 1.66466 1.32784 1.58860 1.20934 0.92592 0.98805 0.98424 0.88643 1.21335 0.95048 0.96474 1.00738 1.21530 0.94955 1.01556 0.97697 1.22134 0.99841 0.96534 0.99662 1.21553 0.98294 0.86118 0.88255 0.90357 1.92797 1.97065 1.64924 1.64459 1.22173 0.92521 1.04617 0.98381 0.91754 0.90852 0.83999 0.75535 0.91677 0.91434 0.91486 0.91850 0.90350 0.91403 0.88870 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.71 8.95 55.50 0.50 -22.21 16 2 C 0.03 0.80 5.18 -17.47 -0.09 0.71 16 3 Si 0.93 19.48 29.56 -169.99 -5.03 14.46 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.32 -8.01 8.49 -14.93 -0.13 -8.14 16 8 H 0.11 2.59 4.95 -52.48 -0.26 2.33 16 9 N -0.43 -10.77 2.20 -116.10 -0.26 -11.03 16 10 C 0.15 3.66 5.10 -5.19 -0.03 3.63 16 11 C 0.50 12.44 6.65 36.00 0.24 12.68 16 12 O -0.52 -14.65 17.00 -18.75 -0.32 -14.97 16 13 O -0.53 -10.97 13.42 -39.24 -0.53 -11.50 16 14 C 0.48 11.48 6.61 -10.98 -0.07 11.40 16 15 O -0.60 -15.77 15.71 5.55 0.09 -15.68 16 16 C -0.09 -1.71 1.55 -91.77 -0.14 -1.86 16 17 H 0.10 2.05 7.01 -51.93 -0.36 1.69 16 18 C -0.10 -1.71 4.58 -26.73 -0.12 -1.83 16 19 C -0.12 -1.67 5.80 -26.73 -0.16 -1.82 16 20 C -0.14 -1.76 5.72 -26.73 -0.15 -1.91 16 21 C 0.09 1.32 4.12 -26.70 -0.11 1.21 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 F -0.21 -3.56 16.04 2.25 0.04 -3.52 16 24 C -0.14 -2.31 4.68 -26.70 -0.12 -2.43 16 25 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.07 1.67 7.69 -51.93 -0.40 1.27 16 27 H 0.14 3.45 5.89 -51.93 -0.31 3.14 16 28 H 0.39 6.22 9.10 45.56 0.41 6.64 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.18 7.96 -51.93 -0.41 0.76 16 31 H 0.07 0.98 7.80 -51.93 -0.41 0.58 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.66 6.08 -51.93 -0.32 1.34 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -31.56 296.34 -5.64 -37.21 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -3.72 Total: 11.14 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -0.88 Total: 11.64 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.24 Total: -33.24 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.76 Total: -42.15 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.56 -5.64 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.097 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds