Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46565 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47346 * 299.99627 * 3 2 1 6 6 H 1.48496 * 109.47324 * 60.00188 * 3 2 1 7 7 C 1.38952 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99673 * 170.60841 * 7 2 1 9 9 N 1.37092 * 120.00017 * 350.60432 * 7 2 1 10 10 C 1.46502 * 120.00346 * 342.94145 * 9 7 2 11 11 C 1.50697 * 109.47133 * 97.15069 * 10 9 7 12 12 O 1.20828 * 119.99560 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00395 * 180.02562 * 11 10 9 14 14 C 1.34777 * 120.00186 * 162.94855 * 9 7 2 15 15 O 1.21292 * 120.00322 * 182.61564 * 14 9 7 16 16 C 1.50701 * 119.99712 * 2.60885 * 14 9 7 17 17 H 1.09000 * 109.47206 * 312.77545 * 16 14 9 18 18 C 1.53000 * 109.47232 * 192.76908 * 16 14 9 19 19 C 1.52996 * 109.47346 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.46807 * 60.00253 * 19 18 16 21 21 C 1.52999 * 109.47105 * 299.99622 * 20 19 18 22 22 H 1.09000 * 109.46957 * 179.97438 * 21 20 19 23 23 F 1.39891 * 109.47761 * 300.00122 * 21 20 19 24 24 C 1.53003 * 109.46976 * 72.77127 * 16 14 9 25 25 H 0.97004 * 119.99958 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47598 * 217.15260 * 10 9 7 27 27 H 1.09003 * 109.47069 * 337.15656 * 10 9 7 28 28 H 0.96699 * 117.00386 * 180.02562 * 13 11 10 29 29 H 1.09003 * 109.46669 * 60.00183 * 18 16 14 30 30 H 1.09000 * 109.47545 * 300.00429 * 18 16 14 31 31 H 1.09000 * 109.47260 * 300.00740 * 19 18 16 32 32 H 1.08997 * 109.47367 * 179.97438 * 19 18 16 33 33 H 1.09002 * 109.47264 * 59.99963 * 20 19 18 34 34 H 1.09003 * 109.47196 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47202 * 299.99994 * 24 16 14 36 36 H 1.09000 * 109.46813 * 60.00177 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0780 -1.2096 -0.1532 9 7 1.3371 -2.3827 0.1928 10 6 -0.0126 -2.3722 0.7625 11 6 -1.0276 -2.4462 -0.3489 12 8 -0.6611 -2.5026 -1.4989 13 8 -2.3387 -2.4496 -0.0614 14 6 1.9183 -3.5520 -0.1412 15 8 1.3063 -4.5915 -0.0146 16 6 3.3286 -3.5677 -0.6722 17 1 3.4342 -2.8070 -1.4456 18 6 3.6349 -4.9443 -1.2655 19 6 5.0665 -4.9601 -1.8051 20 6 6.0443 -4.6670 -0.6653 21 6 5.7381 -3.2904 -0.0721 22 1 6.4344 -3.0818 0.7402 23 9 5.8730 -2.3141 -1.0648 24 6 4.3061 -3.2748 0.4680 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1346 -3.2300 1.4237 27 1 -0.1606 -1.4528 1.3290 28 1 -2.9517 -2.4988 -0.8076 29 1 2.9385 -5.1529 -2.0777 30 1 3.5293 -5.7051 -0.4920 31 1 5.1716 -4.1994 -2.5786 32 1 5.2848 -5.9410 -2.2273 33 1 5.9391 -5.4277 0.1083 34 1 7.0642 -4.6778 -1.0498 35 1 4.0879 -2.2941 0.8907 36 1 4.2005 -4.0356 1.2414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -204.435032 kcal Electronic energy + Delta-G solvation = -22650.292841 eV Core-core repulsion = 19047.663264 eV Total energy + Delta-G solvation = -3602.629578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.50581 -41.38581 -40.30777 -37.99877 -36.96569 -36.50809 -33.50155 -32.26591 -31.22160 -29.52065 -26.79653 -24.50023 -23.58942 -22.53627 -21.13446 -20.51364 -19.10542 -18.77508 -18.06207 -17.39639 -16.97051 -16.47350 -16.28705 -16.20288 -16.15990 -15.79322 -15.62356 -14.76079 -14.55949 -14.22233 -13.77731 -13.53957 -13.33745 -13.29245 -13.13697 -12.76411 -12.60681 -12.44035 -12.29862 -12.20256 -12.08153 -11.95607 -11.63744 -11.54944 -11.34557 -10.98470 -10.91290 -10.30435 -9.92113 -8.35105 -5.97964 1.38822 1.47074 1.59880 1.70223 1.85773 2.25450 2.50887 2.89830 3.17303 3.65229 3.68707 3.82849 3.98042 4.21277 4.25921 4.32240 4.44219 4.49126 4.52289 4.62611 4.79477 4.83215 4.95566 5.03869 5.09737 5.15226 5.22695 5.24969 5.36716 5.51429 5.53356 5.71798 5.86365 6.34473 7.06072 7.32797 7.47699 7.86850 8.68619 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.008397 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.716044 B = 3333.884507 C = 4604.282360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.119 0.881 9 N -0.442 5.442 10 C 0.147 3.853 11 C 0.502 3.498 12 O -0.560 6.560 13 O -0.520 6.520 14 C 0.462 3.538 15 O -0.629 6.629 16 C -0.082 4.082 17 H 0.073 0.927 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.138 4.138 21 C 0.091 3.909 22 H 0.114 0.886 23 F -0.229 7.229 24 C -0.134 4.134 25 H 0.272 0.728 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.411 0.589 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.062 -3.856 2.751 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.136 0.864 9 N -0.160 5.160 10 C 0.021 3.979 11 C 0.346 3.654 12 O -0.450 6.450 13 O -0.332 6.332 14 C 0.253 3.747 15 O -0.517 6.517 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.132 4.132 19 C -0.152 4.152 20 C -0.176 4.176 21 C 0.055 3.945 22 H 0.132 0.868 23 F -0.210 7.210 24 C -0.172 4.172 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.270 0.730 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.986 -4.165 2.829 10.301 hybrid contribution -0.955 1.110 -0.954 1.748 sum 8.031 -3.055 1.875 8.795 Atomic orbital electron populations 1.69865 1.07245 1.28394 1.49471 1.26112 0.96320 1.02865 0.95669 0.84843 0.78959 0.76947 0.77536 1.17897 1.21718 1.19548 1.20245 0.94024 0.82786 1.49320 0.86377 1.43674 1.12133 1.06270 1.53927 1.20780 0.80594 1.04553 0.91976 1.23978 0.82172 0.68458 0.90809 1.90534 1.81413 1.48390 1.24672 1.84464 1.17976 1.86085 1.44636 1.20982 0.90483 0.82922 0.80339 1.90481 1.67550 1.33589 1.60118 1.20929 0.90866 0.99620 0.98916 0.90874 1.21309 0.97157 0.94870 0.99829 1.21503 0.92800 1.02692 0.98214 1.22153 1.00432 0.95629 0.99357 1.21800 0.96862 0.86871 0.88937 0.86802 1.92767 1.97010 1.65891 1.65369 1.22145 0.93636 1.04070 0.97365 0.91806 0.89991 0.84198 0.72978 0.94192 0.91364 0.92592 0.89383 0.88334 0.88815 0.90413 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.94 8.95 21.66 0.19 -46.75 16 2 C -0.01 -0.49 5.18 84.93 0.44 -0.05 16 3 Si 0.99 39.67 29.56 68.60 2.03 41.70 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.34 -16.84 8.49 84.04 0.71 -16.12 16 8 H 0.12 5.58 4.95 -2.91 -0.01 5.56 16 9 N -0.44 -22.48 2.20 -639.60 -1.41 -23.89 16 10 C 0.15 7.21 5.10 85.63 0.44 7.65 16 11 C 0.50 25.34 6.65 71.23 0.47 25.81 16 12 O -0.56 -32.36 17.00 21.96 0.37 -31.99 16 13 O -0.52 -21.12 13.42 -51.34 -0.69 -21.81 16 14 C 0.46 22.77 6.61 87.66 0.58 23.35 16 15 O -0.63 -33.81 15.71 -3.07 -0.05 -33.86 16 16 C -0.08 -3.28 1.55 -11.54 -0.02 -3.30 16 17 H 0.07 3.23 7.01 -2.39 -0.02 3.21 16 18 C -0.09 -3.24 4.58 30.59 0.14 -3.10 16 19 C -0.11 -2.94 5.80 30.59 0.18 -2.77 16 20 C -0.14 -2.85 5.72 30.59 0.17 -2.68 16 21 C 0.09 2.29 4.12 30.61 0.13 2.42 16 22 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 23 F -0.23 -7.28 16.04 44.97 0.72 -6.55 16 24 C -0.13 -4.28 4.68 30.61 0.14 -4.14 16 25 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 26 H 0.08 3.80 7.69 -2.39 -0.02 3.79 16 27 H 0.14 6.91 5.89 -2.39 -0.01 6.90 16 28 H 0.41 12.77 9.10 -74.06 -0.67 12.10 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 2.33 7.96 -2.39 -0.02 2.31 16 31 H 0.06 1.56 7.80 -2.39 -0.02 1.55 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.71 6.08 -2.38 -0.01 2.70 16 36 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -69.01 296.34 5.00 -64.00 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.44 Total: 32.08 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 3.39 Total: 27.08 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.21 Total: -70.64 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -0.36 Total: -87.66 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.72 Total: -6.55 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -69.01 5.00 -64.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.434 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds