Wall clock time and date at job start Mon Mar 30 2020 01:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46718 * 2 1 4 4 C 1.34783 * 120.00167 * 274.99656 * 3 2 1 5 5 O 1.21535 * 119.99739 * 0.02562 * 4 3 2 6 6 C 1.47598 * 120.00098 * 180.02562 * 4 3 2 7 7 C 1.34386 * 120.00176 * 188.44628 * 6 4 3 8 8 C 1.47484 * 119.99755 * 30.66411 * 7 6 4 9 9 O 1.21542 * 119.99984 * 5.71864 * 8 7 6 10 10 C 1.47721 * 119.99832 * 185.72000 * 8 7 6 11 11 C 1.39742 * 120.15584 * 179.97438 * 10 8 7 12 12 C 1.37899 * 119.83720 * 179.97438 * 11 10 8 13 13 C 1.38416 * 120.16156 * 0.27899 * 12 11 10 14 14 C 1.50695 * 119.84192 * 179.72166 * 13 12 11 15 15 C 1.38418 * 120.31495 * 359.44238 * 13 12 11 16 16 C 1.37904 * 120.15797 * 0.55979 * 15 13 12 17 17 C 1.50699 * 109.46936 * 119.99723 * 2 1 3 18 18 N 1.27944 * 119.99845 * 234.99663 * 17 2 1 19 19 Si 1.86792 * 120.00107 * 55.00440 * 17 2 1 20 20 H 1.48507 * 109.47325 * 59.99536 * 19 17 2 21 21 H 1.48498 * 109.47404 * 179.97438 * 19 17 2 22 22 H 1.48497 * 109.47221 * 299.99671 * 19 17 2 23 23 H 1.09000 * 109.47304 * 300.00090 * 1 2 3 24 24 H 1.09001 * 109.47396 * 59.99992 * 1 2 3 25 25 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47018 * 240.00546 * 2 1 3 27 27 H 0.96997 * 119.99968 * 95.00211 * 3 2 1 28 28 H 1.07999 * 120.00410 * 8.44459 * 6 4 3 29 29 H 1.07998 * 119.99963 * 210.66877 * 7 6 4 30 30 H 1.07995 * 120.08277 * 0.02562 * 11 10 8 31 31 H 1.07994 * 119.91920 * 179.97438 * 12 11 10 32 32 H 1.09009 * 109.46900 * 90.00229 * 14 13 12 33 33 H 1.08997 * 109.47160 * 209.99603 * 14 13 12 34 34 H 1.08998 * 109.47218 * 329.99748 * 14 13 12 35 35 H 1.07999 * 119.92170 * 180.28069 * 15 13 12 36 36 H 1.08001 * 120.07982 * 179.74982 * 16 15 13 37 37 H 0.97003 * 119.99920 * 179.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1470 2.0506 -1.1628 5 8 1.8576 1.5083 -2.2113 6 6 2.6395 3.4420 -1.1628 7 6 2.6084 4.1658 -2.2947 8 6 1.5561 3.9200 -3.2984 9 8 0.6577 3.1374 -3.0579 10 6 1.5941 4.6248 -4.5961 11 6 0.5990 4.3940 -5.5497 12 6 0.6406 5.0560 -6.7587 13 6 1.6678 5.9429 -7.0310 14 6 1.7096 6.6577 -8.3570 15 6 2.6536 6.1808 -6.0889 16 6 2.6249 5.5259 -4.8756 17 6 2.0323 -0.7103 1.2305 18 7 2.8448 -0.1199 2.0231 19 14 1.4689 -2.4529 1.5984 20 1 1.8647 -3.3474 0.4810 21 1 2.1027 -2.9229 2.8564 22 1 -0.0081 -2.4739 1.7499 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 2.2490 1.8141 0.8368 28 1 3.0248 3.8785 -0.2532 29 1 3.3539 4.9273 -2.4693 30 1 -0.2010 3.6995 -5.3401 31 1 -0.1274 4.8783 -7.4968 32 1 1.1622 7.5973 -8.2806 33 1 2.7456 6.8618 -8.6272 34 1 1.2512 6.0312 -9.1221 35 1 3.4497 6.8775 -6.3063 36 1 3.3970 5.7094 -4.1430 37 1 3.1678 -0.5770 2.8154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625210901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:03 Heat of formation + Delta-G solvation = 11.559428 kcal Electronic energy + Delta-G solvation = -20138.079883 eV Core-core repulsion = 16961.930013 eV Total energy + Delta-G solvation = -3176.149869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41214 -40.53559 -39.27302 -37.80362 -34.75621 -34.35478 -33.66788 -32.04256 -31.60701 -28.80655 -26.20394 -25.07179 -23.61423 -23.19608 -21.67172 -21.05952 -19.92066 -18.91691 -17.99042 -17.63022 -16.83093 -16.40921 -16.20429 -15.86533 -15.74617 -15.46707 -15.13528 -14.91387 -14.61369 -14.57067 -14.48555 -14.29484 -14.06426 -13.81601 -13.36107 -13.03909 -12.83055 -12.72359 -12.57152 -12.52808 -12.11801 -11.94384 -11.51883 -11.20661 -10.99782 -10.21989 -10.15384 -9.98374 -9.89773 -9.66934 -0.75894 0.09482 0.39983 0.71133 0.98112 1.41329 1.71209 1.75384 1.84405 2.26999 2.32988 2.87450 3.01565 3.27582 3.77135 3.81823 3.92921 3.99809 4.10283 4.14759 4.22261 4.34660 4.40441 4.44713 4.59101 4.72679 4.77066 4.81595 4.82661 4.87721 4.91388 5.03650 5.12015 5.20277 5.22608 5.31521 5.44502 5.46913 5.57823 5.94407 6.55223 6.63647 6.77345 7.29952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 N -0.700 5.700 4 C 0.520 3.480 5 O -0.558 6.558 6 C -0.124 4.124 7 C -0.151 4.151 8 C 0.398 3.602 9 O -0.458 6.458 10 C -0.186 4.186 11 C -0.082 4.082 12 C -0.144 4.144 13 C -0.062 4.062 14 C -0.120 4.120 15 C -0.138 4.138 16 C -0.067 4.067 17 C -0.016 4.016 18 N -0.641 5.641 19 Si 0.981 3.019 20 H -0.245 1.245 21 H -0.249 1.249 22 H -0.230 1.230 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.418 0.582 28 H 0.188 0.812 29 H 0.193 0.807 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 3.307 2.349 5.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 N -0.354 5.354 4 C 0.308 3.692 5 O -0.437 6.437 6 C -0.145 4.145 7 C -0.171 4.171 8 C 0.278 3.722 9 O -0.335 6.335 10 C -0.187 4.187 11 C -0.100 4.100 12 C -0.162 4.162 13 C -0.062 4.062 14 C -0.177 4.177 15 C -0.156 4.156 16 C -0.085 4.085 17 C -0.263 4.263 18 N -0.256 5.256 19 Si 0.796 3.204 20 H -0.169 1.169 21 H -0.172 1.172 22 H -0.153 1.153 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.256 0.744 28 H 0.206 0.794 29 H 0.209 0.791 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.773 2.603 1.957 4.277 hybrid contribution -0.097 -0.472 0.579 0.753 sum 2.676 2.131 2.536 4.259 Atomic orbital electron populations 1.22129 0.93125 1.03802 1.02854 1.20261 0.94937 0.82441 0.96489 1.45814 1.66150 1.14096 1.09311 1.19336 0.77614 0.88480 0.83725 1.90832 1.49396 1.70692 1.32737 1.23922 0.98860 0.91665 1.00059 1.24204 0.96908 1.02876 0.93097 1.21297 0.85779 0.78674 0.86424 1.90658 1.35988 1.28405 1.78415 1.20585 0.99215 1.02669 0.96259 1.21430 0.97380 0.97583 0.93596 1.21253 0.99867 0.98021 0.97081 1.20598 0.93526 0.94788 0.97263 1.20948 1.04103 1.00407 0.92220 1.21444 0.99801 1.01049 0.93265 1.21765 0.96229 0.92741 0.97762 1.30788 0.94052 1.06518 0.94991 1.67930 1.08666 1.41774 1.07231 0.85055 0.82243 0.71986 0.81142 1.16860 1.17236 1.15296 0.90908 0.93034 0.89451 0.88443 0.74423 0.79449 0.79052 0.86734 0.84410 0.89777 0.89879 0.90873 0.82600 0.81876 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.36 9.04 71.98 0.65 0.29 16 2 C 0.16 0.51 2.69 44.25 0.12 0.63 16 3 N -0.70 -2.57 4.90 -449.26 -2.20 -4.77 16 4 C 0.52 4.41 7.10 86.71 0.62 5.02 16 5 O -0.56 -9.89 13.05 19.88 0.26 -9.63 16 6 C -0.12 -0.06 9.95 23.86 0.24 0.17 16 7 C -0.15 -0.11 9.39 23.83 0.22 0.11 16 8 C 0.40 3.86 6.53 27.22 0.18 4.04 16 9 O -0.46 -8.33 13.31 19.85 0.26 -8.07 16 10 C -0.19 -1.32 5.88 -20.04 -0.12 -1.44 16 11 C -0.08 -0.72 9.60 22.55 0.22 -0.50 16 12 C -0.14 -0.65 9.68 22.23 0.22 -0.43 16 13 C -0.06 -0.08 5.89 -19.78 -0.12 -0.19 16 14 C -0.12 0.45 10.00 71.23 0.71 1.16 16 15 C -0.14 0.11 9.68 22.23 0.22 0.33 16 16 C -0.07 -0.01 9.46 22.55 0.21 0.20 16 17 C -0.02 0.02 5.37 88.67 0.48 0.49 16 18 N -0.64 0.54 12.48 24.11 0.30 0.84 16 19 Si 0.98 -3.51 27.83 68.60 1.91 -1.61 16 20 H -0.25 0.35 7.11 99.48 0.71 1.06 16 21 H -0.25 0.79 7.11 99.48 0.71 1.49 16 22 H -0.23 0.83 7.03 99.48 0.70 1.53 16 23 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 24 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.09 -0.15 6.59 -2.39 -0.02 -0.16 16 26 H 0.10 0.56 7.58 -2.39 -0.02 0.54 16 27 H 0.42 -0.19 7.73 -92.71 -0.72 -0.91 16 28 H 0.19 -1.63 8.06 -2.91 -0.02 -1.65 16 29 H 0.19 -1.69 6.37 -2.91 -0.02 -1.71 16 30 H 0.11 1.28 7.65 -2.91 -0.02 1.26 16 31 H 0.14 0.17 8.06 -2.91 -0.02 0.14 16 32 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 33 H 0.08 -0.49 8.08 -2.39 -0.02 -0.51 16 34 H 0.07 -0.29 8.08 -2.39 -0.02 -0.31 16 35 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 36 H 0.16 -1.21 6.24 -2.91 -0.02 -1.22 16 37 H 0.35 -1.42 8.23 -92.71 -0.76 -2.18 16 Total: 0.00 -21.80 318.26 4.74 -17.06 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: 0.37 Total: -3.70 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.84 Total: 9.88 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: -1.90 Total: -3.93 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.52 Total: -17.70 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 1.91 Total: -1.61 kcal Total: -21.80 4.74 -17.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625210901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.615 kcal (2) G-P(sol) polarization free energy of solvation -21.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds