Wall clock time and date at job start Mon Mar 30 2020 01:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48506 * 109.47105 * 264.66509 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.66405 * 3 2 1 6 6 H 1.48503 * 109.47165 * 144.66630 * 3 2 1 7 7 C 1.37873 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99770 * 4.70741 * 7 2 1 9 9 C 1.50694 * 120.00327 * 184.98561 * 7 2 1 10 10 H 1.08993 * 109.47099 * 24.82175 * 9 7 2 11 11 C 1.50701 * 109.47557 * 144.82716 * 9 7 2 12 12 O 1.21279 * 120.00537 * 119.99894 * 11 9 7 13 13 N 1.34780 * 119.99507 * 300.00244 * 11 9 7 14 14 C 1.46507 * 119.99715 * 180.02562 * 13 11 9 15 15 C 1.47197 * 109.46748 * 179.97438 * 14 13 11 16 16 C 6.66106 * 103.65690 * 123.68060 * 2 1 3 17 17 C 7.66094 * 97.34356 * 117.62872 * 2 1 3 18 18 O 1.42899 * 109.47034 * 90.18778 * 17 16 15 19 19 C 1.50706 * 109.46942 * 264.82523 * 9 7 2 20 20 C 1.38236 * 119.99842 * 305.00952 * 19 9 7 21 21 C 1.38235 * 119.99754 * 179.80983 * 20 19 9 22 22 C 1.38239 * 119.99940 * 0.40204 * 21 20 19 23 23 C 1.38234 * 120.00038 * 359.85501 * 22 21 20 24 24 C 1.38228 * 119.99904 * 125.28988 * 19 9 7 25 25 H 0.97005 * 119.99741 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00023 * 359.97438 * 13 11 9 27 27 H 1.08995 * 109.46448 * 299.99185 * 14 13 11 28 28 H 1.08999 * 109.47061 * 59.99992 * 14 13 11 29 29 H 1.09001 * 109.46990 * 210.18959 * 17 16 15 30 30 H 1.09000 * 109.47019 * 330.18420 * 17 16 15 31 31 H 0.96695 * 113.99699 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00365 * 0.02562 * 20 19 9 33 33 H 1.07998 * 120.00073 * 180.23745 * 21 20 19 34 34 H 1.08002 * 119.99764 * 179.83407 * 22 21 20 35 35 H 1.07999 * 119.99887 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.00085 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6095 1.9813 -1.3941 5 1 1.3949 2.6826 0.5842 6 1 3.4859 1.4753 0.8097 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0758 9 6 3.5072 -1.1965 0.1139 10 1 3.8355 -0.2839 0.6112 11 6 3.9485 -2.3928 0.9172 12 8 4.6839 -3.2193 0.4201 13 7 3.5257 -2.5443 2.1880 14 6 3.9551 -3.7071 2.9690 15 6 3.3620 -3.6404 4.3146 16 6 2.8879 -3.5895 5.3862 17 6 2.2944 -3.5235 6.7317 18 8 0.8780 -3.3705 6.6205 19 6 4.1148 -1.2645 -1.2635 20 6 3.7598 -2.2849 -2.1259 21 6 4.3142 -2.3450 -3.3908 22 6 5.2298 -1.3895 -3.7903 23 6 5.5887 -0.3722 -2.9260 24 6 5.0314 -0.3099 -1.6625 25 1 -0.4850 0.8401 -0.0004 26 1 2.9378 -1.8832 2.5856 27 1 3.6271 -4.6198 2.4718 28 1 5.0420 -3.7083 3.0511 29 1 2.5192 -4.4423 7.2734 30 1 2.7106 -2.6727 7.2711 31 1 0.4199 -3.3202 7.4706 32 1 3.0468 -3.0331 -1.8127 33 1 4.0340 -3.1400 -4.0659 34 1 5.6649 -1.4381 -4.7776 35 1 6.3044 0.3741 -3.2380 36 1 5.3118 0.4850 -0.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635128678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:28 Heat of formation + Delta-G solvation = -12.159577 kcal Electronic energy + Delta-G solvation = -19862.656848 eV Core-core repulsion = 16699.134185 eV Total energy + Delta-G solvation = -3163.522663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35683 -37.93567 -37.19121 -34.95219 -33.64339 -32.48573 -31.49140 -30.11195 -28.68546 -27.38776 -25.23729 -23.40861 -21.84032 -21.00731 -19.41225 -17.75795 -17.41849 -17.13513 -16.11998 -16.01515 -15.44326 -15.17950 -14.77430 -14.48576 -14.20370 -14.00698 -13.36612 -12.99472 -12.81696 -12.65430 -12.51640 -12.30916 -12.05236 -11.85604 -11.15190 -11.01358 -10.98083 -10.45690 -10.34777 -10.18435 -9.91742 -9.80662 -9.51778 -8.99212 -8.68808 -8.47444 -8.11556 -7.79677 -6.28468 -4.32952 2.15999 2.22307 2.38038 2.58538 3.16083 3.24200 3.28346 3.55203 3.93599 4.13193 4.23393 4.64849 4.69293 5.02296 5.03107 5.21062 5.51083 5.57301 5.62249 5.67161 5.75195 5.79053 5.97249 6.12437 6.30550 6.34337 6.47975 6.76035 6.87135 6.99982 7.18910 7.27256 7.29109 7.37876 7.53996 7.61095 7.81837 8.18429 8.26926 8.71588 9.05318 9.28991 10.82511 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.005299 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.726697 B = 5283.069873 C = 6355.951752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.512 4.512 8 H 0.083 0.917 9 C 0.020 3.980 10 H 0.074 0.926 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.726 5.726 14 C 0.232 3.768 15 C -0.152 4.152 16 C -0.182 4.182 17 C 0.195 3.805 18 O -0.564 6.564 19 C -0.027 4.027 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.269 0.731 26 H 0.410 0.590 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.385 0.615 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -3.010 8.309 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.120 4.120 3 Si 0.693 3.307 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.101 0.899 9 C -0.002 4.002 10 H 0.092 0.908 11 C 0.327 3.673 12 O -0.439 6.439 13 N -0.379 5.379 14 C 0.109 3.891 15 C -0.153 4.153 16 C -0.184 4.184 17 C 0.118 3.882 18 O -0.370 6.370 19 C -0.028 4.028 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.246 0.754 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.288 -3.502 7.309 10.899 hybrid contribution -0.141 1.263 0.770 1.486 sum 7.147 -2.239 8.079 11.017 Atomic orbital electron populations 1.69868 1.06182 1.27497 1.48130 1.24985 0.94722 0.98782 0.93499 0.87012 0.80145 0.83802 0.79706 1.19106 1.21108 1.18705 1.20531 0.86175 0.95422 1.52786 0.89911 1.18572 0.98399 0.93825 0.89381 0.90805 1.21189 0.77638 0.88005 0.80426 1.90600 1.37497 1.45461 1.70332 1.45914 1.52631 1.25636 1.13768 1.18027 0.98037 0.91249 0.81782 1.22359 0.97794 1.01738 0.93417 1.21713 1.01035 1.00245 0.95394 1.18667 0.81021 1.00580 0.87904 1.86624 1.18259 1.96823 1.35295 1.20059 0.92367 0.93331 0.97059 1.20848 0.97983 0.97616 0.92623 1.21034 0.98156 0.98981 0.96554 1.20863 0.99862 0.96317 0.99104 1.20880 1.00693 0.98668 0.94436 1.20971 0.98181 0.99749 0.96610 0.92097 0.75426 0.89298 0.89515 0.91205 0.91114 0.76694 0.86482 0.87106 0.87329 0.87265 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.43 0.77 -24.52 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.17 27.23 -169.99 -4.63 15.54 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.66 6.06 56.52 0.34 -5.32 16 7 C -0.51 -13.35 8.06 -34.44 -0.28 -13.62 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 9 C 0.02 0.45 1.90 -94.08 -0.18 0.27 16 10 H 0.07 1.66 4.87 -51.93 -0.25 1.41 16 11 C 0.54 11.78 7.04 -10.98 -0.08 11.70 16 12 O -0.56 -13.14 15.37 5.56 0.09 -13.05 16 13 N -0.73 -13.83 5.44 -63.16 -0.34 -14.17 16 14 C 0.23 3.72 6.15 -6.83 -0.04 3.67 16 15 C -0.15 -2.36 13.45 -37.14 -0.50 -2.86 16 16 C -0.18 -2.62 13.72 -37.13 -0.51 -3.13 16 17 C 0.19 1.95 7.52 34.37 0.26 2.21 16 18 O -0.56 -6.39 13.62 -35.23 -0.48 -6.87 16 19 C -0.03 -0.61 4.11 -104.62 -0.43 -1.04 16 20 C -0.07 -1.60 8.25 -39.58 -0.33 -1.92 16 21 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 22 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 23 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 24 C -0.14 -2.81 9.50 -39.59 -0.38 -3.19 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.41 7.78 8.34 -40.82 -0.34 7.44 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.39 2.01 9.12 45.56 0.42 2.42 16 32 H 0.12 2.66 7.93 -52.49 -0.42 2.24 16 33 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -32.94 322.52 -7.07 -40.01 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -3.59 Total: 12.44 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.75 Total: -14.24 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.43 Total: -38.69 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.39 Total: -19.92 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.63 Total: 15.54 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.94 -7.07 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635128678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.855 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds