Wall clock time and date at job start Mon Mar 30 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48506 * 109.47105 * 264.66509 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.66405 * 3 2 1 6 6 H 1.48503 * 109.47165 * 144.66630 * 3 2 1 7 7 C 1.37873 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99770 * 4.70741 * 7 2 1 9 9 C 1.50694 * 120.00327 * 184.98561 * 7 2 1 10 10 H 1.08993 * 109.47099 * 24.82175 * 9 7 2 11 11 C 1.50701 * 109.47557 * 144.82716 * 9 7 2 12 12 O 1.21279 * 120.00537 * 119.99894 * 11 9 7 13 13 N 1.34780 * 119.99507 * 300.00244 * 11 9 7 14 14 C 1.46507 * 119.99715 * 180.02562 * 13 11 9 15 15 C 1.47197 * 109.46748 * 179.97438 * 14 13 11 16 16 C 6.66106 * 103.65690 * 123.68060 * 2 1 3 17 17 C 7.66094 * 97.34356 * 117.62872 * 2 1 3 18 18 O 1.42899 * 109.47034 * 90.18778 * 17 16 15 19 19 C 1.50706 * 109.46942 * 264.82523 * 9 7 2 20 20 C 1.38236 * 119.99842 * 305.00952 * 19 9 7 21 21 C 1.38235 * 119.99754 * 179.80983 * 20 19 9 22 22 C 1.38239 * 119.99940 * 0.40204 * 21 20 19 23 23 C 1.38234 * 120.00038 * 359.85501 * 22 21 20 24 24 C 1.38228 * 119.99904 * 125.28988 * 19 9 7 25 25 H 0.97005 * 119.99741 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00023 * 359.97438 * 13 11 9 27 27 H 1.08995 * 109.46448 * 299.99185 * 14 13 11 28 28 H 1.08999 * 109.47061 * 59.99992 * 14 13 11 29 29 H 1.09001 * 109.46990 * 210.18959 * 17 16 15 30 30 H 1.09000 * 109.47019 * 330.18420 * 17 16 15 31 31 H 0.96695 * 113.99699 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00365 * 0.02562 * 20 19 9 33 33 H 1.07998 * 120.00073 * 180.23745 * 21 20 19 34 34 H 1.08002 * 119.99764 * 179.83407 * 22 21 20 35 35 H 1.07999 * 119.99887 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.00085 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6095 1.9813 -1.3941 5 1 1.3949 2.6826 0.5842 6 1 3.4859 1.4753 0.8097 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0758 9 6 3.5072 -1.1965 0.1139 10 1 3.8355 -0.2839 0.6112 11 6 3.9485 -2.3928 0.9172 12 8 4.6839 -3.2193 0.4201 13 7 3.5257 -2.5443 2.1880 14 6 3.9551 -3.7071 2.9690 15 6 3.3620 -3.6404 4.3146 16 6 2.8879 -3.5895 5.3862 17 6 2.2944 -3.5235 6.7317 18 8 0.8780 -3.3705 6.6205 19 6 4.1148 -1.2645 -1.2635 20 6 3.7598 -2.2849 -2.1259 21 6 4.3142 -2.3450 -3.3908 22 6 5.2298 -1.3895 -3.7903 23 6 5.5887 -0.3722 -2.9260 24 6 5.0314 -0.3099 -1.6625 25 1 -0.4850 0.8401 -0.0004 26 1 2.9378 -1.8832 2.5856 27 1 3.6271 -4.6198 2.4718 28 1 5.0420 -3.7083 3.0511 29 1 2.5192 -4.4423 7.2734 30 1 2.7106 -2.6727 7.2711 31 1 0.4199 -3.3202 7.4706 32 1 3.0468 -3.0331 -1.8127 33 1 4.0340 -3.1400 -4.0659 34 1 5.6649 -1.4381 -4.7776 35 1 6.3044 0.3741 -3.2380 36 1 5.3118 0.4850 -0.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635128678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:27 Heat of formation + Delta-G solvation = -36.386288 kcal Electronic energy + Delta-G solvation = -19863.707397 eV Core-core repulsion = 16699.134185 eV Total energy + Delta-G solvation = -3164.573212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02991 -39.47808 -38.01571 -36.37161 -35.54354 -33.79375 -33.31763 -31.61989 -30.07725 -28.82029 -26.49270 -25.21657 -23.37107 -22.55717 -21.07173 -19.14869 -18.83986 -18.48157 -17.74428 -17.38002 -16.83330 -16.48222 -16.17492 -15.86385 -15.73866 -15.49067 -14.91865 -14.57151 -14.47777 -14.25430 -14.07351 -13.74501 -13.47310 -13.16701 -12.98318 -12.71965 -12.05725 -12.03597 -11.95520 -11.64142 -11.46657 -11.42076 -10.95181 -10.76549 -10.49751 -10.01636 -9.63577 -9.37094 -8.36026 -6.44693 0.64475 0.70594 1.19626 1.31117 1.38585 1.42926 1.44977 1.80232 2.28708 2.63785 2.95259 2.95570 3.16877 3.88991 4.08350 4.19425 4.22007 4.33625 4.34705 4.40088 4.42608 4.52109 4.57494 4.60073 4.62710 4.82691 4.90976 5.18906 5.32717 5.37558 5.46373 5.70547 5.74809 5.94490 6.18827 6.30694 6.37628 6.57001 6.58985 6.92514 7.20253 7.33761 8.78706 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.005299 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.726697 B = 5283.069873 C = 6355.951752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.034 3.966 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.233 1.233 7 C -0.503 4.503 8 H 0.036 0.964 9 C 0.022 3.978 10 H 0.082 0.918 11 C 0.536 3.464 12 O -0.579 6.579 13 N -0.721 5.721 14 C 0.235 3.765 15 C -0.197 4.197 16 C -0.169 4.169 17 C 0.188 3.812 18 O -0.595 6.595 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.271 0.729 26 H 0.409 0.591 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.410 0.590 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -1.754 8.551 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.157 1.157 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.001 3.999 10 H 0.099 0.901 11 C 0.324 3.676 12 O -0.460 6.460 13 N -0.372 5.372 14 C 0.113 3.887 15 C -0.197 4.197 16 C -0.170 4.170 17 C 0.112 3.888 18 O -0.406 6.406 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.170 4.170 25 H 0.080 0.920 26 H 0.245 0.755 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.262 0.738 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.519 -2.265 7.598 12.388 hybrid contribution -0.855 0.746 0.715 1.341 sum 8.664 -1.519 8.314 12.103 Atomic orbital electron populations 1.70006 1.08043 1.28480 1.50337 1.25749 0.95344 1.02362 0.93162 0.86080 0.79943 0.79132 0.80102 1.18975 1.20854 1.15708 1.20458 0.88020 0.93612 1.51941 0.94535 1.18497 0.96104 0.94615 0.90682 0.90061 1.21032 0.77723 0.87657 0.81164 1.90572 1.38603 1.45881 1.70932 1.45912 1.51766 1.26357 1.13213 1.18039 0.98924 0.89668 0.82038 1.22314 0.99458 1.04104 0.93840 1.22867 0.99762 0.98101 0.96319 1.19089 0.80498 1.03492 0.85748 1.86541 1.19075 1.97036 1.37958 1.20058 0.94317 0.94835 0.96515 1.20830 0.99028 0.97792 0.94578 1.21358 0.98005 1.00173 0.95566 1.21358 0.98384 0.94911 1.00717 1.21370 1.00319 0.99270 0.93242 1.21245 0.98035 0.99527 0.98216 0.92020 0.75541 0.89854 0.88080 0.87822 0.88242 0.73776 0.89319 0.84758 0.83159 0.83304 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 2 C 0.03 1.88 5.47 84.65 0.46 2.34 16 3 Si 0.92 41.35 27.23 68.60 1.87 43.21 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.23 -9.28 6.06 99.48 0.60 -8.67 16 7 C -0.50 -27.46 8.06 25.60 0.21 -27.25 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C 0.02 1.05 1.90 -13.03 -0.02 1.02 16 10 H 0.08 3.62 4.87 -2.39 -0.01 3.60 16 11 C 0.54 24.19 7.04 87.66 0.62 24.81 16 12 O -0.58 -27.97 15.37 -3.03 -0.05 -28.02 16 13 N -0.72 -28.36 5.44 -472.12 -2.57 -30.93 16 14 C 0.24 7.75 6.15 84.57 0.52 8.27 16 15 C -0.20 -6.11 13.45 31.14 0.42 -5.69 16 16 C -0.17 -4.68 13.72 31.14 0.43 -4.26 16 17 C 0.19 3.28 7.52 70.18 0.53 3.81 16 18 O -0.60 -12.45 13.62 -148.98 -2.03 -14.48 16 19 C -0.06 -2.55 4.11 -19.87 -0.08 -2.63 16 20 C -0.10 -4.68 8.25 22.27 0.18 -4.50 16 21 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 22 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 23 C -0.12 -4.04 10.05 22.27 0.22 -3.82 16 24 C -0.15 -5.92 9.50 22.27 0.21 -5.71 16 25 H 0.27 15.11 8.31 -92.70 -0.77 14.33 16 26 H 0.41 16.08 8.34 -92.71 -0.77 15.31 16 27 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.41 3.40 9.12 -74.06 -0.68 2.73 16 32 H 0.09 4.35 7.93 -2.91 -0.02 4.32 16 33 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.12 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -74.39 322.52 1.23 -73.15 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.43 Total: 34.60 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.14 Total: -22.33 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.27 Total: -86.14 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.08 Total: -42.50 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.87 Total: 43.21 kcal Total: -74.39 1.23 -73.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635128678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.769 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds