Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 O 1.42907 * 108.82465 * 36.47399 * 16 14 13 18 18 C 1.52329 * 108.87074 * 155.00169 * 16 14 13 19 19 C 1.54262 * 112.58894 * 120.82439 * 18 16 14 20 20 S 1.83957 * 102.58160 * 24.52805 * 19 18 16 21 21 C 1.54263 * 108.87080 * 278.08228 * 16 14 13 22 22 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 27 27 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 30 30 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 31 31 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 32 32 H 0.96699 * 114.00066 * 300.69847 * 17 16 14 33 33 H 1.09000 * 108.87070 * 241.64204 * 18 16 14 34 34 H 1.08997 * 108.86988 * 0.14875 * 18 16 14 35 35 H 1.08997 * 110.79123 * 142.80290 * 19 18 16 36 36 H 1.09004 * 110.78452 * 266.25627 * 19 18 16 37 37 H 1.08999 * 110.78530 * 332.92117 * 21 16 14 38 38 H 1.09003 * 110.78303 * 96.37802 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.1571 -2.2793 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1811 -1.5771 4.8221 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 8 1.3641 1.6259 -4.6485 18 6 2.3244 -0.0671 -6.0563 19 6 1.6202 -0.7532 -7.2450 20 16 -0.1311 -0.2338 -7.0275 21 6 -0.0677 -0.2442 -5.1890 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7164 1.1668 3.4844 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 0.9938 0.7578 -2.3564 32 1 0.8073 1.8878 -3.9025 33 1 2.7573 0.8730 -6.3981 34 1 3.1259 -0.7153 -5.7022 35 1 2.0169 -0.3887 -8.1925 36 1 1.7135 -1.8371 -7.1767 37 1 -0.2361 -1.2491 -4.8018 38 1 -0.7901 0.4581 -4.7730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638758403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -91.486586 kcal Electronic energy + Delta-G solvation = -19903.721853 eV Core-core repulsion = 16872.203264 eV Total energy + Delta-G solvation = -3031.518589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36555 -37.41271 -36.48533 -33.97615 -33.15390 -30.98944 -29.56503 -26.26725 -25.83118 -25.53352 -24.85236 -21.94963 -19.81388 -19.15059 -18.43988 -16.92414 -16.30848 -15.90634 -15.48142 -15.10949 -14.86578 -14.63614 -14.05141 -13.83747 -13.08413 -12.90777 -12.83403 -12.66281 -12.37635 -12.28617 -12.15069 -11.51105 -11.36590 -11.28696 -11.04870 -10.95231 -10.73007 -10.50126 -10.42499 -10.25766 -9.74624 -9.56404 -9.22337 -8.87116 -8.64177 -8.43714 -7.89832 -6.09605 -4.19899 1.58739 1.97271 2.67161 3.22661 3.28960 3.32101 3.37711 3.87125 4.17039 4.33824 4.50457 4.68135 4.84620 4.93528 5.11963 5.17617 5.27524 5.47718 5.71393 5.86223 6.07732 6.18979 6.37990 6.60872 6.70034 6.78043 6.83643 6.90837 7.18177 7.24518 7.45623 7.61499 7.79341 7.91583 8.04013 8.27336 8.38559 8.80644 9.46538 10.91870 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.004129 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.938367 B = 6779.809819 C = 6947.191778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.707 5.707 14 C 0.484 3.516 15 O -0.538 6.538 16 C 0.124 3.876 17 O -0.538 6.538 18 C -0.117 4.117 19 C -0.061 4.061 20 S -0.280 6.280 21 C -0.091 4.091 22 H 0.087 0.913 23 H 0.004 0.996 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.395 0.605 32 H 0.379 0.621 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 0.932 -14.275 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.267 3.733 15 O -0.416 6.416 16 C 0.078 3.922 17 O -0.344 6.344 18 C -0.156 4.156 19 C -0.209 4.209 20 S -0.053 6.053 21 C -0.240 4.240 22 H 0.105 0.895 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.024 0.976 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.228 0.772 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.728 0.603 -15.500 15.608 hybrid contribution 0.457 -0.324 2.280 2.348 sum -1.272 0.279 -13.220 13.284 Atomic orbital electron populations 1.21840 0.97707 0.99232 1.00070 1.18379 0.92813 0.92842 0.90513 1.21838 0.98713 0.98211 1.00130 1.20997 1.31663 1.12094 0.89805 0.92368 1.24878 0.94804 0.94885 0.98901 1.69804 1.36643 1.22664 1.23238 0.86507 0.78691 0.79736 0.82913 1.19754 1.21009 1.21014 1.21813 0.98400 0.95822 0.83142 1.46302 1.51967 1.31404 1.06108 1.21071 0.81316 0.85516 0.85433 1.90678 1.38012 1.26504 1.86401 1.22005 0.93470 0.82155 0.94597 1.86709 1.72064 1.20440 1.55231 1.21888 0.98622 1.03312 0.91728 1.24174 0.91724 1.03620 1.01375 1.87916 1.19092 1.90728 1.07593 1.24887 0.98070 1.06380 0.94672 0.89466 0.97684 0.95354 0.95351 0.97554 0.89463 0.92983 0.92418 0.92437 0.76931 0.77199 0.88570 0.87432 0.87190 0.88634 0.87913 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 2 C 0.06 1.21 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.82 8.07 37.16 0.30 -2.52 16 4 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -22.87 9.35 55.43 0.52 -22.35 16 8 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.60 4.50 -4.05 -0.02 2.59 16 13 N -0.71 -11.41 4.86 -60.30 -0.29 -11.71 16 14 C 0.48 7.71 6.47 -10.99 -0.07 7.64 16 15 O -0.54 -10.32 15.40 5.55 0.09 -10.24 16 16 C 0.12 1.56 1.17 -91.45 -0.11 1.45 16 17 O -0.54 -6.42 12.60 -35.23 -0.44 -6.86 16 18 C -0.12 -1.38 5.69 -26.41 -0.15 -1.53 16 19 C -0.06 -0.61 7.46 37.82 0.28 -0.33 16 20 S -0.28 -3.30 23.27 -107.50 -2.50 -5.80 16 21 C -0.09 -1.04 6.59 37.82 0.25 -0.79 16 22 H 0.09 2.08 6.08 -51.93 -0.32 1.76 16 23 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 27 H 0.09 2.09 6.06 -51.93 -0.31 1.78 16 28 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.40 5.54 4.64 -40.82 -0.19 5.35 16 32 H 0.38 3.42 7.40 45.56 0.34 3.76 16 33 H 0.10 1.08 7.83 -51.93 -0.41 0.68 16 34 H 0.11 1.40 6.45 -51.93 -0.33 1.07 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.21 7.85 -51.93 -0.41 0.81 16 38 H 0.12 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -28.24 310.93 -7.46 -35.71 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.83 Total: 7.66 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 0.34 Total: -6.32 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.23 Total: -34.06 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.36 Total: -17.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.50 Total: -5.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.24 -7.46 -35.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638758403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.777 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds