Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 O 1.42907 * 108.82465 * 36.47399 * 16 14 13 18 18 C 1.52329 * 108.87074 * 155.00169 * 16 14 13 19 19 C 1.54262 * 112.58894 * 120.82439 * 18 16 14 20 20 S 1.83957 * 102.58160 * 24.52805 * 19 18 16 21 21 C 1.54263 * 108.87080 * 278.08228 * 16 14 13 22 22 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 27 27 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 30 30 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 31 31 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 32 32 H 0.96699 * 114.00066 * 300.69847 * 17 16 14 33 33 H 1.09000 * 108.87070 * 241.64204 * 18 16 14 34 34 H 1.08997 * 108.86988 * 0.14875 * 18 16 14 35 35 H 1.08997 * 110.79123 * 142.80290 * 19 18 16 36 36 H 1.09004 * 110.78452 * 266.25627 * 19 18 16 37 37 H 1.08999 * 110.78530 * 332.92117 * 21 16 14 38 38 H 1.09003 * 110.78303 * 96.37802 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.1571 -2.2793 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1811 -1.5771 4.8221 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 8 1.3641 1.6259 -4.6485 18 6 2.3244 -0.0671 -6.0563 19 6 1.6202 -0.7532 -7.2450 20 16 -0.1311 -0.2338 -7.0275 21 6 -0.0677 -0.2442 -5.1890 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7164 1.1668 3.4844 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 0.9938 0.7578 -2.3564 32 1 0.8073 1.8878 -3.9025 33 1 2.7573 0.8730 -6.3981 34 1 3.1259 -0.7153 -5.7022 35 1 2.0169 -0.3887 -8.1925 36 1 1.7135 -1.8371 -7.1767 37 1 -0.2361 -1.2491 -4.8018 38 1 -0.7901 0.4581 -4.7730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638758403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -110.518405 kcal Electronic energy + Delta-G solvation = -19904.547135 eV Core-core repulsion = 16872.203264 eV Total energy + Delta-G solvation = -3032.343871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59657 -38.70379 -37.97872 -35.29373 -34.40872 -32.73986 -30.51061 -27.68211 -27.56611 -27.17957 -26.21349 -23.14966 -20.94638 -20.72066 -19.78423 -17.94965 -17.78721 -17.24952 -16.80174 -16.65390 -16.13263 -15.95547 -15.23615 -15.07569 -14.81744 -14.40697 -14.04547 -13.85882 -13.57024 -13.35277 -13.19672 -13.11957 -13.00213 -12.71074 -12.59093 -12.33091 -12.26415 -12.14600 -12.01234 -11.50276 -11.43593 -11.21745 -10.73050 -10.45848 -10.41131 -10.06695 -8.79700 -8.03518 -6.18822 0.71192 1.06948 1.40660 1.45683 1.46609 1.54064 2.04249 2.46297 2.95066 3.20660 3.21694 3.46056 3.67406 3.98973 4.05890 4.23497 4.39159 4.42505 4.48055 4.68861 4.70632 4.85949 4.91439 4.96999 5.04251 5.08049 5.18500 5.29128 5.52158 5.66932 5.67242 6.15469 6.19941 6.29129 6.42680 6.57654 6.85197 7.08114 7.49200 8.95273 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.004129 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.938367 B = 6779.809819 C = 6947.191778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.147 3.853 13 N -0.699 5.699 14 C 0.485 3.515 15 O -0.572 6.572 16 C 0.136 3.864 17 O -0.541 6.541 18 C -0.119 4.119 19 C -0.052 4.052 20 S -0.299 6.299 21 C -0.088 4.088 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.019 0.981 25 H 0.016 0.984 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.260 0.740 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.408 0.592 32 H 0.393 0.607 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 1.612 -15.524 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.023 3.977 13 N -0.351 5.351 14 C 0.269 3.731 15 O -0.452 6.452 16 C 0.090 3.910 17 O -0.349 6.349 18 C -0.158 4.158 19 C -0.200 4.200 20 S -0.072 6.072 21 C -0.236 4.236 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.246 0.754 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.304 1.309 -16.753 16.962 hybrid contribution 0.651 -0.538 2.647 2.778 sum -1.653 0.771 -14.106 14.224 Atomic orbital electron populations 1.21679 0.96843 0.98815 1.00585 1.18372 0.93436 0.93021 0.90177 1.21685 0.97890 0.97807 1.00588 1.21292 1.31738 1.12068 0.91584 0.93821 1.25412 0.95167 0.95551 1.00870 1.69903 1.36997 1.23163 1.23534 0.85748 0.78140 0.78733 0.80419 1.20076 1.20844 1.20761 1.21335 0.97159 0.95221 0.83967 1.46077 1.52143 1.31635 1.05275 1.21730 0.80317 0.85019 0.86034 1.90667 1.39454 1.28176 1.86950 1.21900 0.94207 0.82155 0.92721 1.86711 1.72596 1.19598 1.56000 1.21912 0.98276 1.03560 0.92035 1.24240 0.90222 1.03797 1.01732 1.88017 1.20577 1.90826 1.07810 1.24889 0.97533 1.06662 0.94553 0.91968 0.94048 0.96190 0.96488 0.94102 0.91886 0.93046 0.94246 0.93877 0.75434 0.75634 0.87838 0.88891 0.84870 0.88272 0.88454 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 8.08 71.98 0.58 -4.42 16 2 C 0.05 2.20 0.50 -52.93 -0.03 2.18 16 3 C -0.12 -5.11 8.07 71.98 0.58 -4.53 16 4 C -0.53 -27.00 8.01 25.60 0.21 -26.79 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -46.39 9.35 21.45 0.20 -46.19 16 8 Si 0.94 41.69 29.54 68.60 2.03 43.71 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 C 0.15 5.82 4.50 86.38 0.39 6.21 16 13 N -0.70 -21.41 4.86 -463.09 -2.25 -23.66 16 14 C 0.48 14.75 6.47 87.66 0.57 15.32 16 15 O -0.57 -21.75 15.40 -3.04 -0.05 -21.79 16 16 C 0.14 3.13 1.17 -11.33 -0.01 3.12 16 17 O -0.54 -11.26 12.60 -148.98 -1.88 -13.13 16 18 C -0.12 -2.57 5.69 30.80 0.18 -2.40 16 19 C -0.05 -0.93 7.46 72.41 0.54 -0.39 16 20 S -0.30 -6.34 23.27 -56.49 -1.31 -7.65 16 21 C -0.09 -1.77 6.59 72.41 0.48 -1.30 16 22 H 0.06 2.91 6.08 -2.39 -0.01 2.90 16 23 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 27 H 0.06 2.98 6.06 -2.39 -0.01 2.97 16 28 H 0.26 12.97 8.31 -92.70 -0.77 12.20 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.41 10.24 4.64 -92.71 -0.43 9.81 16 32 H 0.39 5.65 7.40 -74.06 -0.55 5.10 16 33 H 0.10 2.09 7.83 -2.39 -0.02 2.07 16 34 H 0.09 2.33 6.45 -2.39 -0.02 2.31 16 35 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.10 2.11 7.85 -2.39 -0.02 2.09 16 38 H 0.14 2.19 7.95 -2.39 -0.02 2.17 16 Total: -1.00 -60.27 310.93 0.75 -59.52 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.10 Total: 20.25 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 3.91 Total: -11.04 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -2.05 Total: -69.85 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.92 Total: -34.93 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -1.31 Total: -7.65 kcal Total: -60.27 0.75 -59.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638758403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.003 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds