Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.50697 * 109.47290 * 240.00037 * 2 1 3 5 5 H 1.08000 * 120.00146 * 241.34579 * 4 2 1 6 6 C 1.37879 * 119.99918 * 61.34556 * 4 2 1 7 7 N 1.31512 * 120.00183 * 193.97703 * 6 4 2 8 8 Si 1.86803 * 119.99995 * 13.97670 * 6 4 2 9 9 H 1.48497 * 109.47107 * 84.54587 * 8 6 4 10 10 H 1.48500 * 109.47077 * 204.54500 * 8 6 4 11 11 H 1.48500 * 109.47068 * 324.54942 * 8 6 4 12 12 C 1.52999 * 109.46855 * 119.99934 * 2 1 3 13 13 N 1.46496 * 109.47333 * 300.00058 * 12 2 1 14 14 C 1.34778 * 119.99961 * 180.02562 * 13 12 2 15 15 O 1.21277 * 120.00143 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99882 * 180.02562 * 14 13 12 17 17 O 1.42897 * 108.71405 * 323.46426 * 16 14 13 18 18 C 1.52330 * 108.86898 * 204.99791 * 16 14 13 19 19 C 1.54263 * 112.47918 * 239.11044 * 18 16 14 20 20 S 1.83949 * 102.58007 * 335.54307 * 19 18 16 21 21 C 1.53985 * 108.74627 * 81.81457 * 16 14 13 22 22 H 1.08994 * 109.47468 * 309.36135 * 1 2 3 23 23 H 1.09003 * 109.47245 * 69.37220 * 1 2 3 24 24 H 1.09002 * 109.46957 * 189.36516 * 1 2 3 25 25 H 1.09001 * 109.46915 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47203 * 300.00230 * 3 2 1 27 27 H 1.09004 * 109.46751 * 59.99985 * 3 2 1 28 28 H 0.97003 * 120.00512 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47007 * 180.02562 * 12 2 1 30 30 H 1.09003 * 109.47300 * 60.00622 * 12 2 1 31 31 H 0.97000 * 120.00141 * 0.02562 * 13 12 2 32 32 H 0.96701 * 113.99837 * 61.53563 * 17 16 14 33 33 H 1.09001 * 108.86734 * 118.36413 * 18 16 14 34 34 H 1.09005 * 108.87214 * 359.85797 * 18 16 14 35 35 H 1.08994 * 110.78839 * 93.81877 * 19 18 16 36 36 H 1.08997 * 110.78505 * 217.27178 * 19 18 16 37 37 H 1.08997 * 110.85623 * 27.19967 * 21 16 14 38 38 H 1.09008 * 110.94465 * 263.78024 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6353 -1.6010 -1.1315 6 6 1.7224 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7082 10 1 0.2470 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5756 -1.4764 3.7808 16 6 1.3748 0.2192 4.8999 17 8 1.3661 1.6254 4.6464 18 6 2.3240 -0.0671 6.0564 19 6 1.6169 -0.7517 7.2443 20 16 -0.1335 -0.2314 7.0225 21 6 -0.0661 -0.2435 5.1842 22 1 -0.3634 0.6517 0.7945 23 1 -0.3634 0.3620 -0.9618 24 1 -0.3633 -1.0140 0.1672 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6981 -0.6297 -4.4269 29 1 3.1300 -0.7209 1.2495 30 1 1.6767 -1.7490 1.2492 31 1 0.9937 0.7578 2.3564 32 1 0.7838 1.8908 3.9214 33 1 2.7568 0.8731 6.3982 34 1 3.1257 -0.7153 5.7024 35 1 1.7097 -1.8356 7.1772 36 1 2.0119 -0.3865 8.1922 37 1 -0.2344 -1.2486 4.7975 38 1 -0.7898 0.4563 4.7659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638758404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -71.203515 kcal Electronic energy + Delta-G solvation = -19998.929408 eV Core-core repulsion = 16968.290359 eV Total energy + Delta-G solvation = -3030.639049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49237 -37.62568 -36.77004 -34.06413 -33.20742 -31.58223 -29.71419 -26.66032 -26.45271 -25.56140 -24.88429 -22.05215 -19.90901 -19.52592 -18.46372 -17.01250 -16.42952 -16.16904 -15.61834 -15.41321 -14.94068 -14.92854 -14.18312 -14.05802 -13.25052 -13.03636 -12.99243 -12.77071 -12.69206 -12.46198 -12.30047 -12.20540 -12.14289 -11.50693 -11.37528 -11.17577 -10.57160 -10.51724 -10.35371 -10.27006 -10.17007 -9.44053 -9.19133 -8.77756 -8.77309 -8.53853 -7.96221 -6.21994 -4.20146 1.51431 1.90405 2.56965 3.17428 3.18646 3.24553 3.33253 3.77737 4.08707 4.28331 4.41397 4.56230 4.78487 4.85365 5.02615 5.08249 5.19700 5.41145 5.62436 5.65715 5.80006 5.92242 5.93396 6.22867 6.33860 6.38237 6.49069 6.55783 6.58872 6.81717 7.07529 7.09723 7.31558 7.61783 7.64382 8.22395 8.37412 8.82742 9.41272 10.90975 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.004488 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.856199 B = 6237.801997 C = 6437.347707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.516 4.516 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.250 1.250 12 C 0.140 3.860 13 N -0.713 5.713 14 C 0.486 3.514 15 O -0.533 6.533 16 C 0.124 3.876 17 O -0.538 6.538 18 C -0.117 4.117 19 C -0.061 4.061 20 S -0.278 6.278 21 C -0.093 4.093 22 H 0.020 0.980 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.029 0.971 28 H 0.265 0.735 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.393 0.607 32 H 0.378 0.622 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 4.643 17.468 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.176 1.176 12 C 0.019 3.981 13 N -0.364 5.364 14 C 0.269 3.731 15 O -0.410 6.410 16 C 0.078 3.922 17 O -0.344 6.344 18 C -0.155 4.155 19 C -0.209 4.209 20 S -0.052 6.052 21 C -0.242 4.242 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.227 0.773 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.658 4.157 18.621 19.427 hybrid contribution -0.173 1.080 -1.733 2.049 sum -3.830 5.237 16.888 18.091 Atomic orbital electron populations 1.22313 0.97821 0.99810 1.00068 1.18731 0.92509 0.92326 0.93715 1.22370 1.01337 0.98186 0.98606 1.20682 1.34308 1.12415 0.87930 0.90535 1.24972 0.94620 0.97300 0.95766 1.69944 1.47913 1.35912 0.98771 0.87292 0.79346 0.85494 0.76051 1.21281 1.23311 1.17586 1.21608 0.98864 0.95841 0.81836 1.46297 1.52347 1.31500 1.06250 1.21077 0.81253 0.85479 0.85337 1.90697 1.37630 1.26357 1.86328 1.21966 0.93563 0.82102 0.94569 1.86723 1.69617 1.20544 1.57491 1.21899 0.98592 1.03378 0.91679 1.24178 0.91658 1.03695 1.01396 1.87944 1.19188 1.90684 1.07351 1.24843 0.97924 1.06481 0.94930 0.96098 0.92345 0.93346 0.92689 0.93908 0.95249 0.92463 0.91675 0.91590 0.77138 0.77335 0.88530 0.87350 0.88559 0.87138 0.87822 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.53 37.16 0.28 -2.43 16 2 C 0.03 0.58 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.84 7.52 37.16 0.28 -2.56 16 4 C -0.52 -13.37 8.62 -34.44 -0.30 -13.66 16 5 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 6 C 0.08 2.06 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.00 13.96 55.43 0.77 -25.22 16 8 Si 0.89 20.42 22.79 -169.99 -3.87 16.54 16 9 H -0.29 -6.58 7.10 56.52 0.40 -6.18 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.25 -5.16 4.65 56.52 0.26 -4.90 16 12 C 0.14 2.63 4.49 -4.04 -0.02 2.61 16 13 N -0.71 -10.45 4.91 -60.30 -0.30 -10.74 16 14 C 0.49 7.18 6.45 -10.99 -0.07 7.11 16 15 O -0.53 -9.73 15.40 5.56 0.09 -9.64 16 16 C 0.12 1.43 1.16 -91.60 -0.11 1.33 16 17 O -0.54 -5.78 12.59 -35.23 -0.44 -6.22 16 18 C -0.12 -1.28 5.70 -26.41 -0.15 -1.43 16 19 C -0.06 -0.58 7.46 37.82 0.28 -0.30 16 20 S -0.28 -3.08 23.26 -107.50 -2.50 -5.58 16 21 C -0.09 -0.97 6.57 37.67 0.25 -0.72 16 22 H 0.02 0.31 7.13 -51.93 -0.37 -0.06 16 23 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 24 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 27 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.39 4.77 4.78 -40.82 -0.19 4.57 16 32 H 0.38 2.84 7.43 45.56 0.34 3.18 16 33 H 0.10 1.01 7.83 -51.93 -0.41 0.61 16 34 H 0.11 1.33 6.45 -51.93 -0.33 1.00 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.12 7.85 -51.93 -0.41 0.72 16 38 H 0.12 0.99 7.92 -51.92 -0.41 0.58 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -30.71 301.00 -6.16 -36.87 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.71 Total: 7.04 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 0.27 Total: -7.57 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.48 Total: -35.97 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.36 Total: -15.87 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -3.87 Total: 16.54 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.50 Total: -5.58 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.71 -6.16 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638758404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.337 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds