Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.50697 * 109.47290 * 240.00037 * 2 1 3 5 5 H 1.08000 * 120.00146 * 241.34579 * 4 2 1 6 6 C 1.37879 * 119.99918 * 61.34556 * 4 2 1 7 7 N 1.31512 * 120.00183 * 193.97703 * 6 4 2 8 8 Si 1.86803 * 119.99995 * 13.97670 * 6 4 2 9 9 H 1.48497 * 109.47107 * 84.54587 * 8 6 4 10 10 H 1.48500 * 109.47077 * 204.54500 * 8 6 4 11 11 H 1.48500 * 109.47068 * 324.54942 * 8 6 4 12 12 C 1.52999 * 109.46855 * 119.99934 * 2 1 3 13 13 N 1.46496 * 109.47333 * 300.00058 * 12 2 1 14 14 C 1.34778 * 119.99961 * 180.02562 * 13 12 2 15 15 O 1.21277 * 120.00143 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99882 * 180.02562 * 14 13 12 17 17 O 1.42897 * 108.71405 * 323.46426 * 16 14 13 18 18 C 1.52330 * 108.86898 * 204.99791 * 16 14 13 19 19 C 1.54263 * 112.47918 * 239.11044 * 18 16 14 20 20 S 1.83949 * 102.58007 * 335.54307 * 19 18 16 21 21 C 1.53985 * 108.74627 * 81.81457 * 16 14 13 22 22 H 1.08994 * 109.47468 * 309.36135 * 1 2 3 23 23 H 1.09003 * 109.47245 * 69.37220 * 1 2 3 24 24 H 1.09002 * 109.46957 * 189.36516 * 1 2 3 25 25 H 1.09001 * 109.46915 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47203 * 300.00230 * 3 2 1 27 27 H 1.09004 * 109.46751 * 59.99985 * 3 2 1 28 28 H 0.97003 * 120.00512 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47007 * 180.02562 * 12 2 1 30 30 H 1.09003 * 109.47300 * 60.00622 * 12 2 1 31 31 H 0.97000 * 120.00141 * 0.02562 * 13 12 2 32 32 H 0.96701 * 113.99837 * 61.53563 * 17 16 14 33 33 H 1.09001 * 108.86734 * 118.36413 * 18 16 14 34 34 H 1.09005 * 108.87214 * 359.85797 * 18 16 14 35 35 H 1.08994 * 110.78839 * 93.81877 * 19 18 16 36 36 H 1.08997 * 110.78505 * 217.27178 * 19 18 16 37 37 H 1.08997 * 110.85623 * 27.19967 * 21 16 14 38 38 H 1.09008 * 110.94465 * 263.78024 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6353 -1.6010 -1.1315 6 6 1.7224 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7082 10 1 0.2470 1.5866 -3.9288 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5756 -1.4764 3.7808 16 6 1.3748 0.2192 4.8999 17 8 1.3661 1.6254 4.6464 18 6 2.3240 -0.0671 6.0564 19 6 1.6169 -0.7517 7.2443 20 16 -0.1335 -0.2314 7.0225 21 6 -0.0661 -0.2435 5.1842 22 1 -0.3634 0.6517 0.7945 23 1 -0.3634 0.3620 -0.9618 24 1 -0.3633 -1.0140 0.1672 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6981 -0.6297 -4.4269 29 1 3.1300 -0.7209 1.2495 30 1 1.6767 -1.7490 1.2492 31 1 0.9937 0.7578 2.3564 32 1 0.7838 1.8908 3.9214 33 1 2.7568 0.8731 6.3982 34 1 3.1257 -0.7153 5.7024 35 1 1.7097 -1.8356 7.1772 36 1 2.0119 -0.3865 8.1922 37 1 -0.2344 -1.2486 4.7975 38 1 -0.7898 0.4563 4.7659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638758404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -95.515896 kcal Electronic energy + Delta-G solvation = -19999.983672 eV Core-core repulsion = 16968.290359 eV Total energy + Delta-G solvation = -3031.693313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.63565 -38.90667 -38.09033 -35.29019 -34.42795 -33.41286 -30.56799 -28.08153 -27.87568 -27.07259 -26.33068 -23.18049 -21.11666 -20.88406 -19.72234 -18.12119 -17.85842 -17.41661 -17.01810 -16.76206 -16.20514 -16.02763 -15.35573 -15.16773 -14.86394 -14.54444 -14.42530 -14.05532 -13.79751 -13.76083 -13.58306 -13.31986 -12.99407 -12.96001 -12.40582 -12.33877 -12.20809 -12.01477 -11.96273 -11.77485 -11.38751 -11.07791 -10.63161 -10.52245 -10.35839 -10.12945 -8.79356 -8.30552 -6.32743 0.71614 1.07018 1.36461 1.38645 1.45952 1.51700 2.00869 2.34712 2.95962 3.05922 3.21937 3.44751 3.66743 3.98296 4.04887 4.06568 4.24981 4.30113 4.39680 4.43423 4.69170 4.73955 4.80619 4.83696 4.86606 4.92550 4.92928 5.05487 5.13948 5.35524 5.50650 5.70327 5.79198 6.25699 6.32598 6.58049 6.71950 7.07566 7.32425 8.86625 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.004488 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.856199 B = 6237.801997 C = 6437.347707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.027 3.973 3 C -0.149 4.149 4 C -0.519 4.519 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.944 3.056 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.199 1.199 12 C 0.156 3.844 13 N -0.700 5.700 14 C 0.486 3.514 15 O -0.572 6.572 16 C 0.139 3.861 17 O -0.539 6.539 18 C -0.119 4.119 19 C -0.053 4.053 20 S -0.300 6.300 21 C -0.088 4.088 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.411 0.589 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.097 0.903 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 7.460 19.840 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.211 1.211 10 H -0.247 1.247 11 H -0.122 1.122 12 C 0.032 3.968 13 N -0.353 5.353 14 C 0.271 3.729 15 O -0.451 6.451 16 C 0.092 3.908 17 O -0.348 6.348 18 C -0.158 4.158 19 C -0.201 4.201 20 S -0.074 6.074 21 C -0.237 4.237 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.447 7.008 21.037 22.833 hybrid contribution 0.468 0.073 -2.429 2.475 sum -4.979 7.081 18.608 20.522 Atomic orbital electron populations 1.22236 0.95770 1.00818 1.01138 1.18667 0.93986 0.93095 0.91641 1.22312 1.00967 0.96756 1.00485 1.21027 1.32972 1.11092 0.90635 0.95569 1.25877 0.95384 1.01647 0.95199 1.70115 1.50681 1.38365 0.99449 0.86350 0.79424 0.79769 0.77120 1.21083 1.24679 1.12233 1.21094 0.97470 0.95121 0.83070 1.45996 1.52464 1.31772 1.05036 1.21757 0.80221 0.84929 0.86031 1.90691 1.39276 1.28244 1.86926 1.21807 0.94176 0.82281 0.92514 1.86729 1.70282 1.19408 1.58359 1.21921 0.98300 1.03565 0.92051 1.24231 0.90334 1.03758 1.01793 1.88055 1.20544 1.90748 1.08003 1.24867 0.97498 1.06868 0.94471 0.91070 0.93655 0.93955 0.93685 0.94651 0.90393 0.92700 0.93891 0.93699 0.75115 0.75453 0.87780 0.88994 0.88424 0.84999 0.88446 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 7.53 71.98 0.54 -4.35 16 2 C 0.03 1.08 0.50 -52.93 -0.03 1.05 16 3 C -0.15 -5.14 7.52 71.98 0.54 -4.60 16 4 C -0.52 -27.72 8.62 25.60 0.22 -27.50 16 5 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 6 C 0.02 0.90 5.32 84.66 0.45 1.35 16 7 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 8 Si 0.94 41.20 22.79 68.60 1.56 42.76 16 9 H -0.28 -12.22 7.10 99.48 0.71 -11.51 16 10 H -0.32 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.20 -7.08 4.65 99.48 0.46 -6.62 16 12 C 0.16 5.76 4.49 86.38 0.39 6.15 16 13 N -0.70 -18.55 4.91 -463.07 -2.27 -20.82 16 14 C 0.49 13.41 6.45 87.66 0.57 13.98 16 15 O -0.57 -20.71 15.40 -3.02 -0.05 -20.75 16 16 C 0.14 2.79 1.16 -11.43 -0.01 2.78 16 17 O -0.54 -9.24 12.59 -148.98 -1.87 -11.11 16 18 C -0.12 -2.36 5.70 30.80 0.18 -2.19 16 19 C -0.05 -0.88 7.46 72.41 0.54 -0.34 16 20 S -0.30 -5.83 23.26 -56.49 -1.31 -7.14 16 21 C -0.09 -1.54 6.57 72.31 0.48 -1.07 16 22 H 0.07 1.73 7.13 -2.39 -0.02 1.72 16 23 H 0.04 1.68 4.30 -2.39 -0.01 1.67 16 24 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.29 2.25 -2.39 -0.01 1.29 16 27 H 0.08 1.94 6.86 -2.38 -0.02 1.92 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.41 7.86 4.78 -92.71 -0.44 7.42 16 32 H 0.39 3.71 7.43 -74.06 -0.55 3.16 16 33 H 0.10 1.90 7.83 -2.39 -0.02 1.88 16 34 H 0.09 2.17 6.45 -2.38 -0.02 2.15 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.86 7.85 -2.39 -0.02 1.84 16 38 H 0.14 1.74 7.92 -2.38 -0.02 1.72 16 Total: -1.00 -70.67 301.00 0.07 -70.60 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.15 Total: 18.77 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 3.86 Total: -14.75 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.97 Total: -78.37 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.92 Total: -31.87 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.56 Total: 42.76 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.31 Total: -7.14 kcal Total: -70.67 0.07 -70.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638758404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.911 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds