Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47275 * 332.83752 * 3 2 1 5 5 C 1.36942 * 120.00349 * 264.07248 * 4 3 2 6 6 H 1.07997 * 119.99788 * 201.21171 * 5 4 3 7 7 C 1.38806 * 119.99803 * 21.20893 * 5 4 3 8 8 N 1.31622 * 120.00006 * 12.05700 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 192.06037 * 7 5 4 10 10 H 1.48493 * 109.47218 * 84.97915 * 9 7 5 11 11 H 1.48502 * 109.47056 * 204.98211 * 9 7 5 12 12 H 1.48506 * 109.46837 * 324.97817 * 9 7 5 13 13 C 1.46499 * 119.99967 * 84.07145 * 4 3 2 14 14 C 1.50706 * 109.47152 * 270.00218 * 13 4 3 15 15 O 1.20824 * 119.99945 * 359.97438 * 14 13 4 16 16 O 1.34228 * 119.99548 * 179.97438 * 14 13 4 17 17 C 1.45199 * 116.99754 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47651 * 180.02562 * 17 16 14 19 19 C 1.38233 * 119.99822 * 89.99727 * 18 17 16 20 20 C 1.38237 * 119.99488 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00284 * 359.97438 * 20 19 18 22 22 C 1.38240 * 119.99892 * 0.27757 * 21 20 19 23 23 C 1.38234 * 119.99486 * 269.98143 * 18 17 16 24 24 H 4.40640 * 5.51377 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.46843 * 212.84233 * 3 2 1 26 26 H 1.08997 * 109.47086 * 92.84247 * 3 2 1 27 27 H 0.97000 * 119.99664 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47549 * 149.99680 * 13 4 3 29 29 H 1.09004 * 109.46961 * 30.00014 * 13 4 3 30 30 H 1.09006 * 109.47331 * 59.99667 * 17 16 14 31 31 H 1.09001 * 109.47210 * 300.00420 * 17 16 14 32 32 H 1.07998 * 120.00405 * 359.97438 * 19 18 17 33 33 H 1.08000 * 120.00018 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.00138 * 180.02562 * 21 20 19 35 35 H 1.07993 * 119.99869 * 179.72792 * 22 21 20 36 36 H 1.07994 * 120.00775 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.2280 0.6305 5 6 3.4786 -1.2274 1.9561 6 1 4.1411 -1.9878 2.3424 7 6 2.9756 -0.2495 2.8031 8 7 1.9933 0.5285 2.4000 9 14 3.6926 -0.0374 4.5149 10 1 4.8892 0.8391 4.4452 11 1 2.6768 0.5813 5.4039 12 1 4.0818 -1.3644 5.0563 13 6 3.2560 -2.4573 -0.1570 14 6 1.9653 -3.2316 -0.0815 15 8 1.0394 -2.8009 0.5643 16 8 1.8444 -4.3996 -0.7317 17 6 0.5727 -5.0905 -0.6148 18 6 0.6232 -6.3731 -1.4046 19 6 1.0500 -7.5406 -0.8001 20 6 1.0958 -8.7171 -1.5244 21 6 0.7143 -8.7261 -2.8530 22 6 0.2924 -7.5574 -3.4590 23 6 0.2423 -6.3818 -2.7334 24 1 -1.0499 -0.0004 0.0000 25 1 3.0089 0.8643 0.5574 26 1 3.0092 0.0518 -1.0264 27 1 1.6416 1.2116 2.9921 28 1 4.0683 -3.0653 0.2411 29 1 3.4674 -2.2039 -1.1959 30 1 -0.2232 -4.4551 -1.0036 31 1 0.3773 -5.3171 0.4333 32 1 1.3477 -7.5337 0.2380 33 1 1.4289 -9.6294 -1.0521 34 1 0.7497 -9.6454 -3.4188 35 1 -0.0015 -7.5636 -4.4981 36 1 -0.0918 -5.4698 -3.2055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281224708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = 30.906895 kcal Electronic energy + Delta-G solvation = -20118.951604 eV Core-core repulsion = 16957.296443 eV Total energy + Delta-G solvation = -3161.655161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73695 -38.92083 -36.30719 -35.09868 -32.10081 -31.49797 -31.22874 -30.98559 -27.73367 -26.17609 -25.78369 -22.65496 -22.40111 -21.25808 -19.95110 -17.50466 -17.01881 -16.87358 -16.24572 -15.88058 -15.79224 -15.05995 -14.76024 -14.58652 -13.66251 -13.54600 -13.43439 -13.21235 -12.89261 -12.58768 -12.39341 -11.81165 -11.45068 -11.37499 -11.13296 -11.06940 -10.91590 -10.77982 -10.31269 -10.10819 -9.99248 -9.54059 -9.00393 -8.97116 -8.84464 -8.68666 -8.31863 -7.09378 -5.82026 -3.33286 1.16635 1.32029 3.28241 3.30109 3.39199 3.41385 3.42795 3.92782 4.27153 4.48145 4.60780 4.76032 4.77111 4.90966 5.03854 5.29591 5.35688 5.40892 5.55658 5.60905 5.62546 5.86710 5.94586 5.96724 6.02856 6.08785 6.26812 6.35059 6.39633 6.56314 6.70559 6.89371 7.24621 7.26809 7.53092 7.67297 8.19618 8.82855 9.03833 9.38265 9.64644 10.08559 11.18812 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.004126 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.863869 B = 6785.314830 C = 7298.965116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.093 4.093 3 C 0.267 3.733 4 N -0.552 5.552 5 C -0.274 4.274 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.880 5.880 9 Si 0.912 3.088 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.153 3.847 14 C 0.405 3.595 15 O -0.471 6.471 16 O -0.374 6.374 17 C 0.103 3.897 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.185 0.815 25 H 0.106 0.894 26 H 0.036 0.964 27 H 0.257 0.743 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -13.169 -10.247 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.096 4.096 3 C 0.143 3.857 4 N -0.269 5.269 5 C -0.403 4.403 6 H 0.096 0.904 7 C -0.188 4.188 8 N -0.521 5.521 9 Si 0.741 3.259 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.021 3.979 14 C 0.242 3.758 15 O -0.354 6.354 16 O -0.292 6.292 17 C 0.028 3.972 18 C -0.084 4.084 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.202 0.798 25 H 0.123 0.877 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.968 -12.852 -9.900 16.252 hybrid contribution -0.578 -0.061 1.239 1.368 sum -1.546 -12.913 -8.661 15.625 Atomic orbital electron populations 1.23973 0.95169 1.04143 1.07778 1.23877 0.94981 0.96735 0.93990 1.17987 0.83203 0.90636 0.93874 1.44406 1.71749 1.02046 1.08699 1.19259 1.22918 1.13662 0.84444 0.90424 1.25146 0.95950 0.99580 0.98127 1.70056 1.24180 1.21965 1.35917 0.86184 0.78092 0.77983 0.83653 1.21061 1.21662 1.20480 1.21083 0.90901 0.88014 0.97884 1.27262 0.93739 0.78420 0.76335 1.90704 1.40396 1.66980 1.37288 1.86734 1.36821 1.36223 1.69423 1.21583 0.86219 0.89989 0.99374 1.19707 0.99965 0.94147 0.94541 1.21129 0.98030 0.92239 1.00288 1.21137 1.00512 0.97979 0.94608 1.21169 0.99268 0.98140 0.95142 1.21134 1.00495 0.92773 0.99855 1.21119 0.98879 0.98317 0.93398 0.79816 0.87678 0.94583 0.93261 0.89176 0.89994 0.91203 0.91189 0.85819 0.85970 0.86154 0.85976 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.21 18.78 29.55 0.56 -6.66 16 2 C -0.09 -2.37 9.92 -37.12 -0.37 -2.74 16 3 C 0.27 6.37 5.45 -6.83 -0.04 6.33 16 4 N -0.55 -13.43 2.09 -177.95 -0.37 -13.80 16 5 C -0.27 -7.29 9.69 -15.06 -0.15 -7.43 16 6 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 7 C 0.01 0.35 5.07 -17.43 -0.09 0.26 16 8 N -0.88 -25.13 9.08 55.49 0.50 -24.63 16 9 Si 0.91 21.48 29.57 -169.99 -5.03 16.46 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.15 3.08 6.29 -5.19 -0.03 3.04 16 14 C 0.41 8.76 7.93 36.01 0.29 9.05 16 15 O -0.47 -12.16 14.19 -18.75 -0.27 -12.42 16 16 O -0.37 -6.97 10.20 -39.25 -0.40 -7.37 16 17 C 0.10 1.68 5.59 36.01 0.20 1.88 16 18 C -0.08 -1.15 5.52 -104.62 -0.58 -1.73 16 19 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.10 -1.21 9.70 -39.58 -0.38 -1.60 16 24 H 0.18 3.98 7.80 -54.10 -0.42 3.56 16 25 H 0.11 2.68 6.41 -51.93 -0.33 2.35 16 26 H 0.04 0.73 7.98 -51.93 -0.41 0.32 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 29 H 0.08 1.40 7.95 -51.93 -0.41 0.99 16 30 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.07 1.16 8.08 -51.93 -0.42 0.75 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -32.65 321.00 -7.39 -40.04 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.50 Total: 3.04 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.17 Total: -6.15 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.13 Total: -38.43 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.67 Total: -19.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.65 -7.39 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281224708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.949 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds