Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47091 * 2 1 4 4 C 1.47203 * 109.47264 * 119.99584 * 2 1 3 5 5 N 2.60804 * 109.47245 * 119.99644 * 2 1 3 6 6 C 1.53001 * 109.47127 * 239.99855 * 2 1 3 7 7 O 1.45198 * 109.47221 * 65.00049 * 6 2 1 8 8 C 1.34230 * 117.00282 * 179.97438 * 7 6 2 9 9 O 1.20825 * 119.99780 * 359.97438 * 8 7 6 10 10 C 1.50692 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08998 * 109.47263 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.47427 * 60.00320 * 1 2 3 27 27 H 1.09000 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 304.99897 * 6 2 1 29 29 H 1.09004 * 109.46850 * 184.99607 * 6 2 1 30 30 H 1.09000 * 109.47297 * 60.00550 * 10 8 7 31 31 H 1.08997 * 109.47185 * 299.99849 * 10 8 7 32 32 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 34 34 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 35 35 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 36 36 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2019 5 7 2.3993 -1.2293 2.1295 6 6 2.0399 -0.7213 -1.2492 7 8 1.6558 0.0286 -2.4318 8 6 2.0298 -0.4728 -3.6195 9 8 2.6577 -1.5039 -3.6692 10 6 1.6665 0.2502 -4.8907 11 6 2.1997 -0.5155 -6.0741 12 6 3.4206 -0.1857 -6.6173 13 6 3.9103 -0.8840 -7.7099 14 6 3.1815 -1.9254 -8.2637 15 6 1.9615 -2.2768 -7.7331 16 6 1.4543 -1.5746 -6.6239 17 6 0.2020 -1.9271 -6.0699 18 1 -0.3801 -1.1891 -5.5379 19 6 -0.2830 -3.2322 -6.2107 20 7 0.5280 -4.1973 -6.5602 21 14 -2.0887 -3.5961 -5.9000 22 1 -2.2672 -4.0555 -4.4992 23 1 -2.8874 -2.3640 -6.1224 24 1 -2.5471 -4.6580 -6.8314 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7198 -1.2951 29 1 3.1263 -0.7994 -1.2056 30 1 2.1022 1.2493 -4.8777 31 1 0.5820 0.3278 -4.9673 32 1 3.9970 0.6234 -6.1935 33 1 4.8670 -0.6152 -8.1327 34 1 3.5729 -2.4630 -9.1147 35 1 1.3958 -3.0886 -8.1658 36 1 0.1918 -5.1019 -6.6581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761112942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = -53.050932 kcal Electronic energy + Delta-G solvation = -20196.908193 eV Core-core repulsion = 17031.612348 eV Total energy + Delta-G solvation = -3165.295846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97801 -37.88805 -37.29929 -35.87484 -33.69076 -33.66177 -31.84930 -29.52805 -27.68632 -26.51557 -25.08911 -23.41754 -21.12892 -20.94257 -19.43194 -17.80297 -17.20760 -16.71610 -16.40347 -15.85252 -15.42793 -14.73887 -14.54147 -14.01939 -13.83272 -13.64701 -13.30879 -12.98136 -12.67438 -12.61704 -12.36638 -11.92699 -11.84966 -11.63458 -11.54657 -11.23906 -11.15893 -11.12943 -10.98127 -10.75384 -10.45590 -10.28856 -9.73083 -9.54921 -9.42011 -9.19252 -7.41786 -7.36904 -6.76584 -4.39182 2.32317 2.55405 2.71435 2.85702 2.99145 3.04904 3.08049 3.22022 3.24389 3.90132 3.91548 4.54569 4.63362 4.66887 4.93389 5.36321 5.44268 5.49799 5.58454 5.69021 5.76496 5.89807 6.00018 6.05318 6.23567 6.29380 6.46823 6.68628 6.93192 7.06103 7.22523 7.30878 7.35447 7.58363 7.84976 7.96769 8.07203 8.25206 8.48985 8.58910 8.84684 8.94292 10.18059 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.005756 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.087143 B = 4863.700625 C = 6136.603733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 H 0.126 0.874 4 C 0.215 3.785 5 N -0.429 5.429 6 C 0.072 3.928 7 O -0.364 6.364 8 C 0.460 3.540 9 O -0.480 6.480 10 C -0.037 4.037 11 C -0.199 4.199 12 C -0.075 4.075 13 C -0.242 4.242 14 C -0.102 4.102 15 C -0.161 4.161 16 C 0.133 3.867 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.078 3.922 20 N -0.788 5.788 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.259 1.259 24 H -0.275 1.275 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 8.388 6.458 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 H 0.143 0.857 4 C -0.103 4.103 5 N -0.104 5.104 6 C -0.003 4.003 7 O -0.283 6.283 8 C 0.302 3.698 9 O -0.364 6.364 10 C -0.074 4.074 11 C -0.200 4.200 12 C -0.093 4.093 13 C -0.261 4.261 14 C -0.121 4.121 15 C -0.180 4.180 16 C 0.130 3.870 17 C -0.492 4.492 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.412 5.412 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.183 1.183 24 H -0.200 1.200 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.625 6.968 7.835 10.611 hybrid contribution -0.713 -0.401 -0.087 0.823 sum -2.338 6.567 7.747 10.422 Atomic orbital electron populations 1.21833 0.90979 1.03685 1.03903 1.18704 0.98123 0.99581 0.84952 0.85653 1.28853 0.93287 0.93674 0.94501 1.81233 1.08710 1.08817 1.11674 1.22689 1.00514 0.95199 0.81948 1.86456 1.73905 1.53045 1.14907 1.24391 0.76594 0.84697 0.84161 1.90692 1.36036 1.22862 1.86766 1.19959 1.03390 0.97404 0.86655 1.18967 0.97141 1.04806 0.99105 1.20315 0.94582 0.98268 0.96185 1.20311 1.00922 1.02451 1.02427 1.20710 0.95844 0.96762 0.98764 1.21300 0.96551 1.02665 0.97511 1.17338 0.91548 0.88804 0.89289 1.19515 1.02592 0.95513 1.31626 0.90415 1.25866 0.99280 0.96037 0.92815 1.69831 1.35924 1.01383 1.34105 0.86401 0.82784 0.79242 0.78964 1.19640 1.18266 1.20006 0.91646 0.89261 0.91646 0.90360 0.90790 0.89400 0.87770 0.89516 0.89534 0.89487 0.86488 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.05 37.15 0.34 -0.84 16 2 C 0.01 0.07 3.01 -93.41 -0.28 -0.21 16 3 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.22 2.43 14.65 -20.76 -0.30 2.12 16 5 N -0.43 -6.01 18.54 42.15 0.78 -5.22 16 6 C 0.07 0.91 4.80 37.16 0.18 1.09 16 7 O -0.36 -5.37 9.76 -39.26 -0.38 -5.75 16 8 C 0.46 8.73 7.95 36.00 0.29 9.02 16 9 O -0.48 -11.23 15.78 -18.75 -0.30 -11.52 16 10 C -0.04 -0.67 5.46 -29.04 -0.16 -0.83 16 11 C -0.20 -4.52 4.43 -103.91 -0.46 -4.98 16 12 C -0.08 -1.65 9.66 -39.66 -0.38 -2.03 16 13 C -0.24 -5.39 10.05 -39.29 -0.39 -5.79 16 14 C -0.10 -2.40 10.02 -39.66 -0.40 -2.80 16 15 C -0.16 -4.14 8.68 -38.87 -0.34 -4.48 16 16 C 0.13 3.38 5.56 -106.82 -0.59 2.79 16 17 C -0.46 -11.59 8.46 -37.74 -0.32 -11.91 16 18 H 0.08 1.81 6.36 -52.48 -0.33 1.47 16 19 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 20 N -0.79 -20.33 10.98 55.55 0.61 -19.72 16 21 Si 0.90 18.13 29.59 -169.99 -5.03 13.10 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.72 7.82 -51.93 -0.41 0.31 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 29 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.09 1.30 8.06 -51.93 -0.42 0.89 16 31 H 0.10 1.81 6.48 -51.93 -0.34 1.47 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.12 3.10 6.23 -52.49 -0.33 2.77 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -30.45 321.03 -6.74 -37.19 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.34 Total: 4.09 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.92 Total: -17.00 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 1.39 Total: -24.94 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.68 Total: -17.27 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.45 -6.74 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761112942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds