Wall clock time and date at job start Mon Mar 30 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47091 * 2 1 4 4 C 1.47203 * 109.47264 * 119.99584 * 2 1 3 5 5 N 2.60804 * 109.47245 * 119.99644 * 2 1 3 6 6 C 1.53001 * 109.47127 * 239.99855 * 2 1 3 7 7 O 1.45198 * 109.47221 * 65.00049 * 6 2 1 8 8 C 1.34230 * 117.00282 * 179.97438 * 7 6 2 9 9 O 1.20825 * 119.99780 * 359.97438 * 8 7 6 10 10 C 1.50692 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08998 * 109.47263 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.47427 * 60.00320 * 1 2 3 27 27 H 1.09000 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 304.99897 * 6 2 1 29 29 H 1.09004 * 109.46850 * 184.99607 * 6 2 1 30 30 H 1.09000 * 109.47297 * 60.00550 * 10 8 7 31 31 H 1.08997 * 109.47185 * 299.99849 * 10 8 7 32 32 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 34 34 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 35 35 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 36 36 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2019 5 7 2.3993 -1.2293 2.1295 6 6 2.0399 -0.7213 -1.2492 7 8 1.6558 0.0286 -2.4318 8 6 2.0298 -0.4728 -3.6195 9 8 2.6577 -1.5039 -3.6692 10 6 1.6665 0.2502 -4.8907 11 6 2.1997 -0.5155 -6.0741 12 6 3.4206 -0.1857 -6.6173 13 6 3.9103 -0.8840 -7.7099 14 6 3.1815 -1.9254 -8.2637 15 6 1.9615 -2.2768 -7.7331 16 6 1.4543 -1.5746 -6.6239 17 6 0.2020 -1.9271 -6.0699 18 1 -0.3801 -1.1891 -5.5379 19 6 -0.2830 -3.2322 -6.2107 20 7 0.5280 -4.1973 -6.5602 21 14 -2.0887 -3.5961 -5.9000 22 1 -2.2672 -4.0555 -4.4992 23 1 -2.8874 -2.3640 -6.1224 24 1 -2.5471 -4.6580 -6.8314 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7198 -1.2951 29 1 3.1263 -0.7994 -1.2056 30 1 2.1022 1.2493 -4.8777 31 1 0.5820 0.3278 -4.9673 32 1 3.9970 0.6234 -6.1935 33 1 4.8670 -0.6152 -8.1327 34 1 3.5729 -2.4630 -9.1147 35 1 1.3958 -3.0886 -8.1658 36 1 0.1918 -5.1019 -6.6581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761112942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:54 Heat of formation + Delta-G solvation = -68.590131 kcal Electronic energy + Delta-G solvation = -20197.582024 eV Core-core repulsion = 17031.612348 eV Total energy + Delta-G solvation = -3165.969676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39789 -39.45293 -38.47585 -37.22351 -35.46830 -34.66015 -33.48708 -31.33956 -29.10971 -27.67592 -26.82457 -24.42803 -22.83372 -22.50080 -21.04076 -19.12495 -18.79792 -17.96713 -17.64429 -17.17030 -17.12426 -16.20142 -15.88842 -15.41412 -15.30333 -15.06220 -14.40064 -14.31863 -14.12242 -13.75984 -13.61750 -13.49242 -13.23778 -12.95035 -12.78877 -12.67996 -12.63720 -12.48903 -12.37717 -12.09178 -11.97347 -11.50936 -11.31885 -11.27727 -11.17094 -10.99599 -9.22497 -9.18732 -8.56769 -6.26623 0.93157 1.11701 1.39953 1.41344 1.50868 1.51737 1.57332 1.65727 2.02576 2.22569 2.81807 2.96516 3.64358 3.79256 3.82585 4.12674 4.19890 4.39137 4.42177 4.53671 4.60478 4.63605 4.74764 4.84404 4.96405 4.99939 5.06614 5.26641 5.37181 5.38472 5.53177 5.56269 5.81013 6.05602 6.15777 6.24410 6.41668 6.43687 6.75977 6.99260 7.05616 7.13082 8.40477 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.005756 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.087143 B = 4863.700625 C = 6136.603733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.023 3.977 3 H 0.163 0.837 4 C 0.240 3.760 5 N -0.478 5.478 6 C 0.067 3.933 7 O -0.343 6.343 8 C 0.468 3.532 9 O -0.533 6.533 10 C -0.038 4.038 11 C -0.201 4.201 12 C -0.084 4.084 13 C -0.245 4.245 14 C -0.114 4.114 15 C -0.196 4.196 16 C 0.100 3.900 17 C -0.487 4.487 18 H 0.089 0.911 19 C 0.032 3.968 20 N -0.831 5.831 21 Si 0.972 3.028 22 H -0.269 1.269 23 H -0.245 1.245 24 H -0.273 1.273 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 10.897 7.486 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 H 0.180 0.820 4 C -0.078 4.078 5 N -0.154 5.154 6 C -0.009 4.009 7 O -0.261 6.261 8 C 0.312 3.688 9 O -0.421 6.421 10 C -0.075 4.075 11 C -0.202 4.202 12 C -0.102 4.102 13 C -0.264 4.264 14 C -0.133 4.133 15 C -0.215 4.215 16 C 0.098 3.902 17 C -0.516 4.516 18 H 0.107 0.893 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.793 3.207 22 H -0.194 1.194 23 H -0.168 1.168 24 H -0.198 1.198 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.238 9.518 8.873 13.203 hybrid contribution -0.411 -1.100 -0.406 1.242 sum -2.649 8.418 8.467 12.230 Atomic orbital electron populations 1.21878 0.89856 1.03437 1.05266 1.18782 0.98771 1.00406 0.81865 0.81980 1.29162 0.91910 0.92485 0.94202 1.81265 1.10389 1.10309 1.13439 1.22866 1.00633 0.94962 0.82395 1.86415 1.72963 1.52318 1.14361 1.24419 0.75350 0.83679 0.85393 1.90690 1.38663 1.25113 1.87627 1.20044 1.04179 0.98601 0.84702 1.19440 0.97091 1.03711 0.99966 1.20782 0.94569 0.98982 0.95854 1.20724 1.01739 1.01613 1.02370 1.20975 0.95413 0.97480 0.99405 1.21312 0.97871 1.03384 0.98955 1.17745 0.92600 0.90162 0.89709 1.19818 1.03168 0.96204 1.32418 0.89273 1.26758 1.03480 0.95685 0.92271 1.69932 1.37973 1.01871 1.35980 0.85348 0.77334 0.79399 0.78662 1.19375 1.16845 1.19831 0.89456 0.88728 0.92788 0.92076 0.90933 0.85030 0.86739 0.85924 0.86736 0.87939 0.88680 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.05 71.98 0.65 -1.26 16 2 C 0.02 0.34 3.01 -12.60 -0.04 0.31 16 3 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.24 4.98 14.65 89.44 1.31 6.29 16 5 N -0.48 -12.96 18.54 20.01 0.37 -12.59 16 6 C 0.07 1.58 4.80 71.98 0.35 1.93 16 7 O -0.34 -9.21 9.76 -51.42 -0.50 -9.71 16 8 C 0.47 16.96 7.95 71.23 0.57 17.52 16 9 O -0.53 -24.89 15.78 21.97 0.35 -24.54 16 10 C -0.04 -1.31 5.46 29.10 0.16 -1.15 16 11 C -0.20 -8.89 4.43 -19.40 -0.09 -8.98 16 12 C -0.08 -3.49 9.66 22.22 0.21 -3.27 16 13 C -0.25 -10.59 10.05 22.46 0.23 -10.36 16 14 C -0.11 -5.43 10.02 22.22 0.22 -5.21 16 15 C -0.20 -10.42 8.68 22.73 0.20 -10.23 16 16 C 0.10 5.18 5.56 -21.29 -0.12 5.06 16 17 C -0.49 -24.67 8.46 23.46 0.20 -24.48 16 18 H 0.09 4.11 6.36 -2.91 -0.02 4.09 16 19 C 0.03 1.61 5.16 85.26 0.44 2.05 16 20 N -0.83 -44.75 10.98 21.83 0.24 -44.51 16 21 Si 0.97 37.51 29.59 68.60 2.03 39.54 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 1.19 7.82 -2.39 -0.02 1.17 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.13 3.30 8.06 -2.39 -0.02 3.28 16 31 H 0.11 3.69 6.48 -2.39 -0.02 3.67 16 32 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.10 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.10 5.35 6.23 -2.91 -0.02 5.33 16 36 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -68.93 321.03 7.87 -61.07 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.09 Total: 22.53 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.29 Total: -31.78 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.61 Total: -57.10 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.16 Total: -34.25 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -68.93 7.87 -61.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761112942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.523 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds