Wall clock time and date at job start Mon Mar 30 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29741 * 125.61234 * 2 1 4 4 N 1.40181 * 108.07778 * 179.97438 * 3 2 1 5 5 C 1.37072 * 126.33858 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99846 * 179.97438 * 5 4 3 7 7 C 1.38833 * 120.00019 * 359.97438 * 5 4 3 8 8 N 1.31431 * 119.99997 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99593 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47571 * 90.00216 * 9 7 5 11 11 H 1.48509 * 109.46655 * 210.00115 * 9 7 5 12 12 H 1.48497 * 109.47518 * 329.99690 * 9 7 5 13 13 C 1.34932 * 107.31284 * 0.02562 * 4 3 2 14 14 O 1.21715 * 126.26178 * 179.97438 * 13 4 3 15 15 N 1.34803 * 107.46501 * 359.73018 * 13 4 3 16 16 C 1.40178 * 125.81500 * 180.27696 * 15 13 4 17 17 C 1.38834 * 120.06506 * 89.90579 * 16 15 13 18 18 C 1.50694 * 120.03514 * 0.02562 * 17 16 15 19 19 C 1.38122 * 119.92749 * 179.72587 * 17 16 15 20 20 C 1.38276 * 120.07195 * 0.56690 * 19 17 16 21 21 C 1.38280 * 120.12857 * 359.70083 * 20 19 17 22 22 C 1.38122 * 120.06898 * 0.02562 * 21 20 19 23 23 C 1.50695 * 120.03324 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.46953 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 120.01864 * 1 2 3 26 26 H 1.09000 * 109.47161 * 240.02495 * 1 2 3 27 27 H 0.97008 * 120.00060 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47326 * 89.99995 * 18 17 16 29 29 H 1.09001 * 109.47518 * 210.00795 * 18 17 16 30 30 H 1.09005 * 109.47138 * 329.99964 * 18 17 16 31 31 H 1.08003 * 119.96099 * 180.31607 * 19 17 16 32 32 H 1.07996 * 119.93878 * 179.72507 * 20 19 17 33 33 H 1.08005 * 119.96570 * 180.02562 * 21 20 19 34 34 H 1.09006 * 109.47159 * 269.97962 * 23 22 21 35 35 H 1.08994 * 109.47267 * 29.97471 * 23 22 21 36 36 H 1.08997 * 109.47393 * 149.98088 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2625 1.0548 0.0000 4 7 3.5992 0.6324 0.0006 5 6 4.7064 1.4406 0.0013 6 1 5.6939 1.0035 0.0021 7 6 4.5582 2.8210 0.0009 8 7 3.3563 3.3529 0.0004 9 14 6.0671 3.9222 0.0011 10 1 6.4674 4.2138 -1.3989 11 1 5.7518 5.1936 0.7008 12 1 7.1815 3.2349 0.7017 13 6 3.5940 -0.7169 0.0004 14 8 4.5726 -1.4406 0.0003 15 7 2.3066 -1.1165 0.0057 16 6 1.8601 -2.4453 0.0128 17 6 1.6438 -3.0999 1.2179 18 6 1.8882 -2.3825 2.5204 19 6 1.1985 -4.4073 1.2216 20 6 0.9794 -5.0681 0.0269 21 6 1.1992 -4.4204 -1.1749 22 6 1.6392 -3.1112 -1.1852 23 6 1.8780 -2.4060 -2.4953 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5134 0.8902 27 1 3.2528 4.3174 -0.0003 28 1 0.9729 -1.8826 2.8372 29 1 2.1908 -3.1026 3.2807 30 1 2.6779 -1.6433 2.3856 31 1 1.0252 -4.9154 2.1588 32 1 0.6354 -6.0918 0.0323 33 1 1.0268 -4.9389 -2.1066 34 1 2.9098 -2.5630 -2.8097 35 1 1.2030 -2.8062 -3.2517 36 1 1.6940 -1.3387 -2.3724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004088886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:37 Heat of formation + Delta-G solvation = 73.945178 kcal Electronic energy + Delta-G solvation = -21436.948093 eV Core-core repulsion = 18309.451963 eV Total energy + Delta-G solvation = -3127.496130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48946 -39.07761 -35.81310 -34.71613 -33.42239 -32.60025 -31.02857 -30.08310 -28.02051 -26.83783 -26.48710 -24.71764 -22.26351 -20.77218 -20.64132 -19.68201 -18.10668 -16.67841 -16.23490 -15.24438 -15.05884 -14.53925 -14.31292 -14.13058 -13.76864 -13.59669 -13.15659 -13.01233 -12.84054 -12.72447 -12.49832 -12.04100 -11.71670 -11.64302 -11.47015 -11.31634 -11.22578 -11.09986 -10.74997 -10.67414 -10.43150 -10.14468 -9.90406 -9.04665 -8.59917 -8.43760 -8.29338 -7.42827 -6.34817 -4.01582 1.38624 1.47775 3.07610 3.10520 3.21619 3.25528 3.32616 3.78695 3.97188 4.09829 4.55832 4.91667 4.96634 5.04309 5.20229 5.33018 5.44118 5.54275 5.67308 5.70421 5.79089 5.81749 5.88775 5.91213 5.97358 6.01114 6.28104 6.32969 6.44986 6.50919 6.54871 6.60097 6.78827 6.95151 7.11172 7.35491 7.74688 8.10449 8.57976 8.99701 9.40876 9.81366 10.66285 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.005770 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.200540 B = 4851.389869 C = 4891.486316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.152 3.848 3 N -0.193 5.193 4 N -0.252 5.252 5 C -0.309 4.309 6 H 0.118 0.882 7 C 0.043 3.957 8 N -0.813 5.813 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.576 3.424 14 O -0.600 6.600 15 N -0.504 5.504 16 C 0.160 3.840 17 C -0.067 4.067 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.067 4.067 23 C -0.114 4.114 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.269 0.731 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -10.286 0.038 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 N -0.019 5.019 4 N -0.057 5.057 5 C -0.437 4.437 6 H 0.135 0.865 7 C -0.167 4.167 8 N -0.445 5.445 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.190 1.190 13 C 0.280 3.720 14 O -0.480 6.480 15 N -0.231 5.231 16 C 0.069 3.931 17 C -0.068 4.068 18 C -0.170 4.170 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.068 4.068 23 C -0.171 4.171 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.506 -9.446 0.045 12.712 hybrid contribution 0.703 -0.211 -0.007 0.734 sum -7.803 -9.657 0.038 12.416 Atomic orbital electron populations 1.19985 0.85250 1.03963 1.01982 1.24057 0.95888 0.81939 1.10036 1.77871 0.88074 1.17553 1.18435 1.44542 1.03073 1.02703 1.55423 1.19548 0.83494 0.87037 1.53636 0.86483 1.25415 0.98200 0.97057 0.96066 1.70170 1.20921 1.11913 1.41512 0.85857 0.80645 0.79073 0.78723 1.19923 1.20411 1.19048 1.16546 0.82401 0.84134 0.88873 1.90846 1.34667 1.58373 1.64162 1.42915 1.07424 1.03920 1.68845 1.16974 1.00524 0.83261 0.92321 1.20085 0.97595 0.94379 0.94749 1.20733 1.02477 1.00378 0.93392 1.20851 1.01388 0.93688 0.98311 1.21092 0.99936 0.99600 0.92326 1.20850 1.01537 0.93607 0.98247 1.20088 0.97595 0.94319 0.94802 1.20748 1.02286 1.00831 0.93223 0.89297 0.91314 0.91352 0.92112 0.91020 0.91475 0.91202 0.85762 0.85929 0.85761 0.90849 0.91492 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.06 36.01 0.36 -0.46 16 2 C 0.15 3.30 7.45 -153.91 -1.15 2.15 16 3 N -0.19 -5.07 10.39 33.02 0.34 -4.73 16 4 N -0.25 -7.19 3.69 -15.31 -0.06 -7.25 16 5 C -0.31 -8.95 10.12 -14.99 -0.15 -9.10 16 6 H 0.12 3.37 7.82 -52.49 -0.41 2.96 16 7 C 0.04 1.17 5.50 -17.50 -0.10 1.08 16 8 N -0.81 -22.62 11.83 55.49 0.66 -21.97 16 9 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.58 15.74 7.94 -86.75 -0.69 15.05 16 14 O -0.60 -17.93 17.69 5.18 0.09 -17.83 16 15 N -0.50 -11.26 0.95 -61.80 -0.06 -11.32 16 16 C 0.16 3.05 5.15 -83.60 -0.43 2.62 16 17 C -0.07 -1.11 5.90 -104.45 -0.62 -1.72 16 18 C -0.11 -1.82 9.77 36.00 0.35 -1.47 16 19 C -0.12 -1.65 9.70 -39.61 -0.38 -2.03 16 20 C -0.11 -1.35 10.04 -39.55 -0.40 -1.75 16 21 C -0.12 -1.65 9.70 -39.61 -0.38 -2.03 16 22 C -0.07 -1.11 5.90 -104.45 -0.62 -1.72 16 23 C -0.11 -1.83 9.77 36.00 0.35 -1.48 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.07 1.41 6.99 -51.93 -0.36 1.04 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.07 1.26 7.02 -51.93 -0.36 0.89 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -34.37 313.60 -7.66 -42.03 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.49 Total: 1.75 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.84 Total: -0.86 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.88 Total: -45.26 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.09 Total: -17.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.37 -7.66 -42.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004088886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.977 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds