Wall clock time and date at job start Mon Mar 30 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29741 * 125.61234 * 2 1 4 4 N 1.40181 * 108.07778 * 179.97438 * 3 2 1 5 5 C 1.37072 * 126.33858 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99846 * 179.97438 * 5 4 3 7 7 C 1.38833 * 120.00019 * 359.97438 * 5 4 3 8 8 N 1.31431 * 119.99997 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99593 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47571 * 90.00216 * 9 7 5 11 11 H 1.48509 * 109.46655 * 210.00115 * 9 7 5 12 12 H 1.48497 * 109.47518 * 329.99690 * 9 7 5 13 13 C 1.34932 * 107.31284 * 0.02562 * 4 3 2 14 14 O 1.21715 * 126.26178 * 179.97438 * 13 4 3 15 15 N 1.34803 * 107.46501 * 359.73018 * 13 4 3 16 16 C 1.40178 * 125.81500 * 180.27696 * 15 13 4 17 17 C 1.38834 * 120.06506 * 89.90579 * 16 15 13 18 18 C 1.50694 * 120.03514 * 0.02562 * 17 16 15 19 19 C 1.38122 * 119.92749 * 179.72587 * 17 16 15 20 20 C 1.38276 * 120.07195 * 0.56690 * 19 17 16 21 21 C 1.38280 * 120.12857 * 359.70083 * 20 19 17 22 22 C 1.38122 * 120.06898 * 0.02562 * 21 20 19 23 23 C 1.50695 * 120.03324 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.46953 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 120.01864 * 1 2 3 26 26 H 1.09000 * 109.47161 * 240.02495 * 1 2 3 27 27 H 0.97008 * 120.00060 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47326 * 89.99995 * 18 17 16 29 29 H 1.09001 * 109.47518 * 210.00795 * 18 17 16 30 30 H 1.09005 * 109.47138 * 329.99964 * 18 17 16 31 31 H 1.08003 * 119.96099 * 180.31607 * 19 17 16 32 32 H 1.07996 * 119.93878 * 179.72507 * 20 19 17 33 33 H 1.08005 * 119.96570 * 180.02562 * 21 20 19 34 34 H 1.09006 * 109.47159 * 269.97962 * 23 22 21 35 35 H 1.08994 * 109.47267 * 29.97471 * 23 22 21 36 36 H 1.08997 * 109.47393 * 149.98088 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2625 1.0548 0.0000 4 7 3.5992 0.6324 0.0006 5 6 4.7064 1.4406 0.0013 6 1 5.6939 1.0035 0.0021 7 6 4.5582 2.8210 0.0009 8 7 3.3563 3.3529 0.0004 9 14 6.0671 3.9222 0.0011 10 1 6.4674 4.2138 -1.3989 11 1 5.7518 5.1936 0.7008 12 1 7.1815 3.2349 0.7017 13 6 3.5940 -0.7169 0.0004 14 8 4.5726 -1.4406 0.0003 15 7 2.3066 -1.1165 0.0057 16 6 1.8601 -2.4453 0.0128 17 6 1.6438 -3.0999 1.2179 18 6 1.8882 -2.3825 2.5204 19 6 1.1985 -4.4073 1.2216 20 6 0.9794 -5.0681 0.0269 21 6 1.1992 -4.4204 -1.1749 22 6 1.6392 -3.1112 -1.1852 23 6 1.8780 -2.4060 -2.4953 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5134 0.8902 27 1 3.2528 4.3174 -0.0003 28 1 0.9729 -1.8826 2.8372 29 1 2.1908 -3.1026 3.2807 30 1 2.6779 -1.6433 2.3856 31 1 1.0252 -4.9154 2.1588 32 1 0.6354 -6.0918 0.0323 33 1 1.0268 -4.9389 -2.1066 34 1 2.9098 -2.5630 -2.8097 35 1 1.2030 -2.8062 -3.2517 36 1 1.6940 -1.3387 -2.3724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004088886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:36 Heat of formation + Delta-G solvation = 53.929566 kcal Electronic energy + Delta-G solvation = -21437.816035 eV Core-core repulsion = 18309.451963 eV Total energy + Delta-G solvation = -3128.364072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.29936 -40.36202 -37.89625 -36.50200 -34.62045 -34.38685 -32.76830 -31.51622 -29.75332 -28.25530 -27.62308 -26.66557 -23.73128 -22.60026 -21.83130 -21.31669 -20.02279 -18.27585 -17.79841 -17.25134 -16.32256 -16.15609 -16.12355 -15.86836 -15.09298 -14.93913 -14.68444 -14.55408 -14.08012 -13.92732 -13.72998 -13.61169 -13.39238 -13.19590 -12.96769 -12.74600 -12.65279 -12.58143 -12.49261 -12.37304 -12.16569 -11.92986 -11.57445 -10.97583 -10.54737 -9.65441 -9.56355 -9.43376 -8.39560 -6.18776 0.19121 0.35679 1.28337 1.33423 1.44581 1.49609 1.59237 1.94349 2.26786 2.66112 2.76330 3.09654 3.72406 3.82854 3.97342 4.04343 4.15707 4.34216 4.35826 4.49879 4.56435 4.58082 4.60865 4.69244 4.78646 4.83844 4.84649 5.02483 5.05401 5.16346 5.21329 5.24954 5.48645 5.48869 5.59010 5.82992 5.98069 6.21003 6.56101 6.95870 7.41452 7.76951 8.62875 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.005770 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.200540 B = 4851.389869 C = 4891.486316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.186 3.814 3 N -0.247 5.247 4 N -0.275 5.275 5 C -0.357 4.357 6 H 0.099 0.901 7 C 0.006 3.994 8 N -0.840 5.840 9 Si 1.008 2.992 10 H -0.264 1.264 11 H -0.262 1.262 12 H -0.266 1.266 13 C 0.557 3.443 14 O -0.646 6.646 15 N -0.488 5.488 16 C 0.107 3.893 17 C -0.085 4.085 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.094 4.094 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.109 4.109 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.276 0.724 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.015 0.985 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 -12.495 0.087 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 N -0.073 5.073 4 N -0.080 5.080 5 C -0.484 4.484 6 H 0.117 0.883 7 C -0.202 4.202 8 N -0.471 5.471 9 Si 0.828 3.172 10 H -0.189 1.189 11 H -0.186 1.186 12 H -0.190 1.190 13 C 0.260 3.740 14 O -0.531 6.531 15 N -0.212 5.212 16 C 0.018 3.982 17 C -0.086 4.086 18 C -0.165 4.165 19 C -0.134 4.134 20 C -0.111 4.111 21 C -0.134 4.134 22 C -0.087 4.087 23 C -0.166 4.166 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.034 0.966 31 H 0.177 0.823 32 H 0.187 0.813 33 H 0.177 0.823 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.022 -11.663 0.094 16.048 hybrid contribution 1.270 0.262 -0.018 1.297 sum -9.752 -11.402 0.076 15.004 Atomic orbital electron populations 1.20305 0.80573 1.05430 1.04638 1.25294 0.98065 0.81024 1.04370 1.77798 0.87413 1.19826 1.22259 1.44679 1.03974 1.03169 1.56184 1.19687 0.83602 0.88407 1.56703 0.88310 1.26396 1.01781 0.97509 0.94506 1.70278 1.22997 1.12573 1.41267 0.84767 0.76266 0.76945 0.79212 1.18868 1.18629 1.18988 1.16840 0.83780 0.83884 0.89524 1.90749 1.36575 1.59290 1.66501 1.42832 1.05535 1.05789 1.67033 1.17518 1.03930 0.82180 0.94589 1.20268 0.98766 0.95961 0.93645 1.20697 1.01399 0.99887 0.94528 1.21264 0.99533 0.91930 1.00628 1.21650 0.97190 1.01244 0.91041 1.21272 0.99624 0.91910 1.00564 1.20265 0.98788 0.95935 0.93690 1.20700 1.01902 0.99244 0.94731 0.88394 0.88529 0.88474 0.91462 0.89362 0.88909 0.96589 0.82294 0.81299 0.82291 0.93171 0.87405 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.51 10.06 71.24 0.72 -0.79 16 2 C 0.19 8.29 7.45 137.61 1.02 9.32 16 3 N -0.25 -13.68 10.39 -49.45 -0.51 -14.19 16 4 N -0.28 -16.90 3.69 -320.48 -1.18 -18.09 16 5 C -0.36 -22.21 10.12 84.02 0.85 -21.36 16 6 H 0.10 6.23 7.82 -2.91 -0.02 6.21 16 7 C 0.01 0.35 5.50 84.90 0.47 0.82 16 8 N -0.84 -48.38 11.83 21.64 0.26 -48.12 16 9 Si 1.01 43.39 29.55 68.60 2.03 45.42 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.56 32.72 7.94 179.00 1.42 34.14 16 14 O -0.65 -41.83 17.69 -4.40 -0.08 -41.90 16 15 N -0.49 -22.77 0.95 -467.64 -0.44 -23.21 16 16 C 0.11 4.07 5.15 38.09 0.20 4.27 16 17 C -0.09 -2.70 5.90 -19.75 -0.12 -2.82 16 18 C -0.11 -3.45 9.77 71.23 0.70 -2.76 16 19 C -0.12 -2.57 9.70 22.25 0.22 -2.35 16 20 C -0.09 -1.74 10.04 22.29 0.22 -1.52 16 21 C -0.12 -2.58 9.70 22.25 0.22 -2.36 16 22 C -0.09 -2.72 5.90 -19.75 -0.12 -2.84 16 23 C -0.11 -3.49 9.77 71.23 0.70 -2.79 16 24 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 25 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.28 14.49 8.31 -92.70 -0.77 13.72 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 30 H 0.01 0.65 6.99 -2.38 -0.02 0.63 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.11 2.43 8.09 -2.39 -0.02 2.41 16 36 H 0.04 1.43 7.02 -2.39 -0.02 1.41 16 Total: -1.00 -84.36 313.60 7.64 -76.71 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.09 Total: 14.44 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.49 Total: 8.95 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -1.88 Total: -103.62 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.08 Total: -41.90 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -84.36 7.64 -76.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004088886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.643 kcal (2) G-P(sol) polarization free energy of solvation -84.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds