Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.89939 * 2 1 4 4 N 1.40090 * 108.20474 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03938 * 179.97438 * 4 3 2 6 6 C 1.34955 * 107.92402 * 359.75095 * 4 3 2 7 7 C 1.35312 * 107.74249 * 0.39540 * 6 4 3 8 8 C 1.50706 * 126.03731 * 179.87536 * 7 6 4 9 9 N 1.46497 * 109.46796 * 259.68928 * 8 7 6 10 10 C 1.39784 * 120.00271 * 180.02562 * 9 8 7 11 11 C 1.38943 * 120.00943 * 179.97438 * 10 9 8 12 12 C 1.38014 * 119.99201 * 180.23154 * 11 10 9 13 13 C 1.38893 * 120.00778 * 359.49313 * 12 11 10 14 14 O 1.35796 * 119.99965 * 180.23531 * 13 12 11 15 15 C 1.34809 * 117.00833 * 174.73324 * 14 13 12 16 16 H 1.08003 * 119.99228 * 5.05017 * 15 14 13 17 17 C 1.38614 * 120.00609 * 185.05631 * 15 14 13 18 18 N 1.31589 * 119.99588 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00471 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47302 * 89.99915 * 19 17 15 21 21 H 1.48503 * 109.47671 * 210.00074 * 19 17 15 22 22 H 1.48504 * 109.46931 * 330.00138 * 19 17 15 23 23 C 1.38900 * 120.00882 * 0.50727 * 13 12 11 24 24 C 1.38006 * 120.00952 * 359.74664 * 23 13 12 25 25 H 1.09001 * 109.47225 * 269.98567 * 1 2 3 26 26 H 1.09009 * 109.46898 * 29.97838 * 1 2 3 27 27 H 1.08995 * 109.47730 * 149.97399 * 1 2 3 28 28 H 1.07993 * 126.12435 * 180.24676 * 6 4 3 29 29 H 1.08996 * 109.46927 * 139.69018 * 8 7 6 30 30 H 1.08994 * 109.46892 * 19.68434 * 8 7 6 31 31 H 0.97000 * 120.00235 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.00621 * 359.95602 * 11 10 9 33 33 H 1.08008 * 119.99318 * 179.72823 * 12 11 10 34 34 H 0.97008 * 119.99498 * 180.02562 * 18 17 15 35 35 H 1.08001 * 119.99597 * 179.73159 * 23 13 12 36 36 H 1.07997 * 120.00419 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3909 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0046 7 6 2.3271 -1.1330 -0.0005 8 6 1.8598 -2.5658 0.0000 9 7 1.4795 -2.9557 -1.3600 10 6 1.0105 -4.2484 -1.6112 11 6 0.6494 -4.6182 -2.9009 12 6 0.1818 -5.8931 -3.1476 13 6 0.0823 -6.8096 -2.1088 14 8 -0.3732 -8.0654 -2.3526 15 6 -0.3428 -8.9379 -1.3254 16 1 -0.0449 -8.6043 -0.3423 17 6 -0.6936 -10.2631 -1.5308 18 7 -1.0569 -10.6694 -2.7286 19 14 -0.6507 -11.4721 -0.1076 20 1 -1.9721 -11.4863 0.5699 21 1 -0.3434 -12.8311 -0.6215 22 1 0.3975 -11.0602 0.8603 23 6 0.4433 -6.4401 -0.8194 24 6 0.9059 -5.1638 -0.5711 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 4.4890 -1.3486 0.0094 29 1 0.9991 -2.6670 0.6610 30 1 2.6654 -3.2105 0.3509 31 1 1.5525 -2.3167 -2.0861 32 1 0.7302 -3.9067 -3.7094 33 1 -0.1031 -6.1792 -4.1494 34 1 -1.3028 -11.5967 -2.8722 35 1 0.3617 -7.1517 -0.0110 36 1 1.1862 -4.8765 0.4315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036901588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = 75.286707 kcal Electronic energy + Delta-G solvation = -19494.124362 eV Core-core repulsion = 16366.686405 eV Total energy + Delta-G solvation = -3127.437957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50335 -38.93934 -37.02397 -34.65973 -32.99131 -32.06274 -30.81211 -30.09494 -28.15606 -27.41212 -25.25749 -24.73911 -22.00620 -21.14514 -20.56834 -19.67309 -18.17750 -17.79383 -17.09421 -15.85503 -15.36269 -14.81269 -14.72618 -14.40670 -13.88797 -13.86187 -13.54561 -13.35484 -12.98738 -12.88350 -12.68968 -12.47324 -12.33376 -12.17129 -11.52023 -11.39645 -11.25186 -10.93502 -10.71074 -10.54047 -10.33139 -9.61589 -9.19588 -9.10595 -8.83699 -8.38966 -8.11317 -6.33075 -6.28287 -3.85660 1.60376 2.26041 2.39245 2.60592 2.63784 3.20946 3.21616 3.26149 4.08310 4.14168 4.45612 4.55365 4.74126 5.04989 5.09101 5.23801 5.30983 5.47235 5.47959 5.66069 5.71141 5.74451 5.80985 5.83160 6.00578 6.26858 6.36218 6.41280 6.55029 6.88680 6.98498 7.04728 7.16346 7.38756 7.41502 7.52459 7.68491 8.06573 8.15820 8.34127 9.17459 9.92917 10.90230 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038203 B = 0.003126 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.759245 B = 8956.095783 C = 9225.430237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.094 3.906 3 N -0.301 5.301 4 N -0.480 5.480 5 H 0.439 0.561 6 C 0.077 3.923 7 C -0.248 4.248 8 C 0.213 3.787 9 N -0.755 5.755 10 C 0.126 3.874 11 C -0.145 4.145 12 C -0.149 4.149 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.385 4.385 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.191 4.191 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.390 0.610 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 18.919 6.111 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.187 5.187 5 H 0.283 0.717 6 C -0.072 4.072 7 C -0.260 4.260 8 C 0.087 3.913 9 N -0.391 5.391 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.169 4.169 13 C 0.060 3.940 14 O -0.095 6.095 15 C -0.462 4.462 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.211 4.211 24 C -0.167 4.167 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.195 0.805 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.223 0.777 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.827 19.827 6.006 22.146 hybrid contribution 0.684 -0.941 0.551 1.288 sum 8.511 18.885 6.557 21.728 Atomic orbital electron populations 1.20254 0.86456 1.03799 1.03212 1.22340 0.97143 0.90042 0.97800 1.77309 0.86669 1.22582 1.25899 1.46221 1.07381 1.05482 1.59609 0.71717 1.22493 0.99441 0.85245 0.99979 1.20117 0.91907 0.96404 1.17590 1.19209 0.98459 0.88214 0.85402 1.44317 1.75866 1.11031 1.07927 1.17407 1.00942 0.85312 0.93524 1.20113 1.05837 0.96238 0.94525 1.20002 1.06283 0.92638 0.97934 1.19233 0.94995 0.87193 0.92622 1.83982 1.72025 1.15683 1.37810 1.21227 1.47071 0.88948 0.88963 0.89475 1.25206 0.97032 0.96668 0.97839 1.70058 1.42870 1.16970 1.20805 0.85774 0.78766 0.79377 0.79836 1.20089 1.20461 1.19373 1.21001 1.06215 0.96620 0.97229 1.20281 1.05920 0.93502 0.97018 0.90381 0.90951 0.89655 0.80500 0.92344 0.92659 0.77690 0.87304 0.86575 0.92361 0.85635 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.26 36.00 0.37 -0.35 16 2 C 0.09 1.03 7.22 -82.41 -0.59 0.43 16 3 N -0.30 -3.41 12.70 33.67 0.43 -2.98 16 4 N -0.48 -3.98 7.36 30.44 0.22 -3.76 16 5 H 0.44 2.16 8.96 -182.61 -1.64 0.53 16 6 C 0.08 0.64 11.90 -17.22 -0.20 0.43 16 7 C -0.25 -2.56 5.47 -105.05 -0.57 -3.13 16 8 C 0.21 2.41 5.02 -5.19 -0.03 2.38 16 9 N -0.76 -9.97 5.73 -59.76 -0.34 -10.31 16 10 C 0.13 2.14 6.66 -83.71 -0.56 1.58 16 11 C -0.14 -2.60 9.89 -39.40 -0.39 -2.99 16 12 C -0.15 -3.17 9.98 -39.42 -0.39 -3.57 16 13 C 0.11 2.74 6.65 -39.09 -0.26 2.48 16 14 O -0.19 -5.53 9.75 -0.04 0.00 -5.53 16 15 C -0.39 -10.99 9.48 30.87 0.29 -10.70 16 16 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 17 C 0.04 0.99 5.49 -17.52 -0.10 0.90 16 18 N -0.87 -26.17 13.67 55.48 0.76 -25.41 16 19 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 C -0.19 -4.18 9.16 -39.42 -0.36 -4.54 16 24 C -0.14 -2.65 9.30 -39.40 -0.37 -3.02 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 28 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 30 H 0.06 0.62 7.94 -51.93 -0.41 0.20 16 31 H 0.39 4.78 8.48 -40.82 -0.35 4.44 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 36 H 0.11 1.68 6.73 -52.49 -0.35 1.33 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -33.52 314.18 -7.77 -41.30 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.39 Total: 6.08 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.16 Total: -20.08 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.07 Total: -42.46 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.52 -7.77 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036901588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.585 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds