Wall clock time and date at job start Mon Mar 30 2020 01:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.89939 * 2 1 4 4 N 1.40090 * 108.20474 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03938 * 179.97438 * 4 3 2 6 6 C 1.34955 * 107.92402 * 359.75095 * 4 3 2 7 7 C 1.35312 * 107.74249 * 0.39540 * 6 4 3 8 8 C 1.50706 * 126.03731 * 179.87536 * 7 6 4 9 9 N 1.46497 * 109.46796 * 259.68928 * 8 7 6 10 10 C 1.39784 * 120.00271 * 180.02562 * 9 8 7 11 11 C 1.38943 * 120.00943 * 179.97438 * 10 9 8 12 12 C 1.38014 * 119.99201 * 180.23154 * 11 10 9 13 13 C 1.38893 * 120.00778 * 359.49313 * 12 11 10 14 14 O 1.35796 * 119.99965 * 180.23531 * 13 12 11 15 15 C 1.34809 * 117.00833 * 174.73324 * 14 13 12 16 16 H 1.08003 * 119.99228 * 5.05017 * 15 14 13 17 17 C 1.38614 * 120.00609 * 185.05631 * 15 14 13 18 18 N 1.31589 * 119.99588 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00471 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47302 * 89.99915 * 19 17 15 21 21 H 1.48503 * 109.47671 * 210.00074 * 19 17 15 22 22 H 1.48504 * 109.46931 * 330.00138 * 19 17 15 23 23 C 1.38900 * 120.00882 * 0.50727 * 13 12 11 24 24 C 1.38006 * 120.00952 * 359.74664 * 23 13 12 25 25 H 1.09001 * 109.47225 * 269.98567 * 1 2 3 26 26 H 1.09009 * 109.46898 * 29.97838 * 1 2 3 27 27 H 1.08995 * 109.47730 * 149.97399 * 1 2 3 28 28 H 1.07993 * 126.12435 * 180.24676 * 6 4 3 29 29 H 1.08996 * 109.46927 * 139.69018 * 8 7 6 30 30 H 1.08994 * 109.46892 * 19.68434 * 8 7 6 31 31 H 0.97000 * 120.00235 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.00621 * 359.95602 * 11 10 9 33 33 H 1.08008 * 119.99318 * 179.72823 * 12 11 10 34 34 H 0.97008 * 119.99498 * 180.02562 * 18 17 15 35 35 H 1.08001 * 119.99597 * 179.73159 * 23 13 12 36 36 H 1.07997 * 120.00419 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3909 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0046 7 6 2.3271 -1.1330 -0.0005 8 6 1.8598 -2.5658 0.0000 9 7 1.4795 -2.9557 -1.3600 10 6 1.0105 -4.2484 -1.6112 11 6 0.6494 -4.6182 -2.9009 12 6 0.1818 -5.8931 -3.1476 13 6 0.0823 -6.8096 -2.1088 14 8 -0.3732 -8.0654 -2.3526 15 6 -0.3428 -8.9379 -1.3254 16 1 -0.0449 -8.6043 -0.3423 17 6 -0.6936 -10.2631 -1.5308 18 7 -1.0569 -10.6694 -2.7286 19 14 -0.6507 -11.4721 -0.1076 20 1 -1.9721 -11.4863 0.5699 21 1 -0.3434 -12.8311 -0.6215 22 1 0.3975 -11.0602 0.8603 23 6 0.4433 -6.4401 -0.8194 24 6 0.9059 -5.1638 -0.5711 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 4.4890 -1.3486 0.0094 29 1 0.9991 -2.6670 0.6610 30 1 2.6654 -3.2105 0.3509 31 1 1.5525 -2.3167 -2.0861 32 1 0.7302 -3.9067 -3.7094 33 1 -0.1031 -6.1792 -4.1494 34 1 -1.3028 -11.5967 -2.8722 35 1 0.3617 -7.1517 -0.0110 36 1 1.1862 -4.8765 0.4315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036901588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:57 Heat of formation + Delta-G solvation = 51.834929 kcal Electronic energy + Delta-G solvation = -19495.141307 eV Core-core repulsion = 16366.686405 eV Total energy + Delta-G solvation = -3128.454902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.22172 -40.61498 -38.65407 -35.96166 -34.13162 -33.69513 -31.88537 -31.65123 -29.01650 -28.65257 -27.11130 -25.96897 -23.52380 -22.22026 -21.84653 -20.45799 -19.77574 -19.03348 -18.56448 -17.40697 -16.55456 -16.19514 -15.81002 -15.53393 -15.39110 -15.27307 -15.10661 -14.63536 -14.26576 -14.04651 -13.70272 -13.64242 -13.42555 -13.36305 -13.01175 -12.92180 -12.79942 -12.49589 -12.22045 -12.06947 -11.51829 -11.02882 -10.85583 -10.34045 -10.10291 -9.70032 -9.58215 -8.35573 -7.83839 -5.98579 0.66389 0.92568 1.01349 1.39223 1.49252 1.56626 1.60075 2.02000 2.25974 2.96656 2.99052 3.32145 3.71540 3.75114 3.93415 4.20460 4.24386 4.28585 4.44485 4.56506 4.64472 4.79776 4.80790 4.83417 5.00583 5.03567 5.07990 5.17799 5.20257 5.33115 5.59041 5.62189 5.67278 5.85935 6.06407 6.16355 6.43973 6.70226 6.72914 7.09921 7.13921 7.99109 8.89272 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038203 B = 0.003126 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.759245 B = 8956.095783 C = 9225.430237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.083 3.917 3 N -0.334 5.334 4 N -0.470 5.470 5 H 0.453 0.547 6 C 0.095 3.905 7 C -0.270 4.270 8 C 0.213 3.787 9 N -0.739 5.739 10 C 0.158 3.842 11 C -0.144 4.144 12 C -0.155 4.155 13 C 0.059 3.941 14 O -0.245 6.245 15 C -0.403 4.403 16 H 0.099 0.901 17 C -0.030 4.030 18 N -0.929 5.929 19 Si 1.016 2.984 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.253 1.253 23 C -0.193 4.193 24 C -0.147 4.147 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.211 0.789 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.399 0.601 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 21.129 7.893 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 N -0.159 5.159 4 N -0.179 5.179 5 H 0.300 0.700 6 C -0.055 4.055 7 C -0.282 4.282 8 C 0.088 3.912 9 N -0.374 5.374 10 C 0.056 3.944 11 C -0.166 4.166 12 C -0.175 4.175 13 C 0.010 3.990 14 O -0.153 6.153 15 C -0.480 4.480 16 H 0.116 0.884 17 C -0.226 4.226 18 N -0.569 5.569 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.176 1.176 23 C -0.213 4.213 24 C -0.170 4.170 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.228 0.772 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.161 0.839 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.698 22.161 7.807 25.419 hybrid contribution 0.272 -1.192 -0.003 1.222 sum 9.970 20.969 7.805 24.495 Atomic orbital electron populations 1.20265 0.85954 1.03686 1.03708 1.22592 0.97789 0.90301 0.97643 1.77268 0.87997 1.23365 1.27229 1.46277 1.07101 1.05967 1.58513 0.70033 1.22990 0.99868 0.85317 0.97311 1.20041 0.92715 0.95528 1.19924 1.19289 0.98836 0.89215 0.83824 1.44443 1.74029 1.09383 1.09498 1.17508 0.97750 0.86404 0.92694 1.20404 1.04745 0.95297 0.96153 1.20212 1.06351 0.93653 0.97250 1.19735 0.97953 0.86565 0.94755 1.83929 1.74934 1.17675 1.38762 1.21754 1.46986 0.89654 0.89603 0.88407 1.26521 0.96467 0.98520 1.01090 1.70218 1.45472 1.17569 1.23650 0.84617 0.79489 0.76227 0.76062 1.19000 1.19895 1.17625 1.21055 1.06251 0.98063 0.95928 1.20504 1.05372 0.92161 0.98946 0.89609 0.90680 0.90084 0.77199 0.92334 0.91548 0.76612 0.83895 0.87090 0.92245 0.86536 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.26 71.23 0.73 -0.54 16 2 C 0.08 1.61 7.22 43.10 0.31 1.92 16 3 N -0.33 -6.78 12.70 -47.39 -0.60 -7.38 16 4 N -0.47 -6.25 7.36 -57.59 -0.42 -6.67 16 5 H 0.45 3.00 8.96 -213.33 -1.91 1.09 16 6 C 0.09 1.17 11.90 83.54 0.99 2.17 16 7 C -0.27 -4.58 5.47 -20.14 -0.11 -4.69 16 8 C 0.21 3.96 5.02 85.64 0.43 4.39 16 9 N -0.74 -16.50 5.73 -342.98 -1.96 -18.47 16 10 C 0.16 4.85 6.66 38.21 0.25 5.10 16 11 C -0.14 -4.84 9.89 22.39 0.22 -4.62 16 12 C -0.15 -6.70 9.98 22.37 0.22 -6.48 16 13 C 0.06 3.01 6.65 22.59 0.15 3.16 16 14 O -0.24 -15.15 9.75 -23.04 -0.22 -15.37 16 15 C -0.40 -24.08 9.48 67.91 0.64 -23.43 16 16 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 17 C -0.03 -1.76 5.49 84.82 0.47 -1.30 16 18 N -0.93 -58.72 13.67 21.61 0.30 -58.42 16 19 Si 1.02 43.97 29.55 68.60 2.03 46.00 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 23 C -0.19 -8.50 9.16 22.37 0.20 -8.29 16 24 C -0.15 -5.05 9.30 22.39 0.21 -4.84 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.08 1.36 7.96 -2.39 -0.02 1.34 16 28 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 30 H 0.07 1.16 7.94 -2.39 -0.02 1.14 16 31 H 0.40 8.05 8.48 -92.71 -0.79 7.26 16 32 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 33 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 35 H 0.12 5.22 5.63 -2.91 -0.02 5.21 16 36 H 0.14 3.84 6.73 -2.91 -0.02 3.82 16 Total: -1.00 -77.27 314.18 2.27 -74.99 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -1.56 Total: 22.76 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.73 Total: -37.44 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.69 Total: -90.95 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.22 Total: -15.37 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.27 2.27 -74.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036901588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.829 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds