Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30836 * 125.89631 * 2 1 4 4 N 1.40085 * 108.20455 * 180.15034 * 3 2 1 5 5 H 0.97005 * 126.03940 * 179.85838 * 4 3 2 6 6 C 1.34949 * 107.92399 * 359.58908 * 4 3 2 7 7 C 1.35317 * 107.74654 * 0.24602 * 6 4 3 8 8 C 1.50695 * 126.03876 * 179.97438 * 7 6 4 9 9 N 1.46495 * 109.47327 * 260.02046 * 8 7 6 10 10 C 1.39667 * 120.00281 * 180.02562 * 9 8 7 11 11 C 1.39006 * 120.04111 * 359.73173 * 10 9 8 12 12 C 1.38157 * 120.06163 * 179.70111 * 11 10 9 13 13 C 1.38163 * 120.14063 * 0.59037 * 12 11 10 14 14 C 1.38916 * 120.08296 * 359.68375 * 13 12 11 15 15 O 1.35752 * 120.03218 * 179.97438 * 14 13 12 16 16 C 1.34829 * 116.99816 * 174.48313 * 15 14 13 17 17 H 1.07999 * 120.00442 * 5.06387 * 16 15 14 18 18 C 1.38653 * 119.99693 * 185.06104 * 16 15 14 19 19 N 1.31557 * 120.00393 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47188 * 59.99362 * 20 18 16 22 22 H 1.48497 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46922 * 299.99856 * 20 18 16 24 24 C 1.38755 * 120.04296 * 180.02562 * 10 9 8 25 25 H 1.08997 * 109.47127 * 270.30005 * 1 2 3 26 26 H 1.09004 * 109.47571 * 30.30063 * 1 2 3 27 27 H 1.09000 * 109.47098 * 150.30103 * 1 2 3 28 28 H 1.08002 * 126.12668 * 180.26225 * 6 4 3 29 29 H 1.09005 * 109.47608 * 20.02601 * 8 7 6 30 30 H 1.08998 * 109.47171 * 140.02018 * 8 7 6 31 31 H 0.97000 * 119.99709 * 0.02562 * 9 8 7 32 32 H 1.08003 * 119.96572 * 359.97020 * 11 10 9 33 33 H 1.07999 * 119.92275 * 180.27561 * 12 11 10 34 34 H 1.08004 * 119.96078 * 179.70599 * 13 12 11 35 35 H 0.96994 * 120.00316 * 180.02562 * 19 18 16 36 36 H 1.08001 * 120.06851 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0035 5 1 4.3908 1.2080 -0.0062 6 6 3.6142 -0.7153 0.0036 7 6 2.3271 -1.1330 0.0058 8 6 1.8600 -2.5657 0.0129 9 7 1.4808 -2.9624 -1.3454 10 6 1.0125 -4.2552 -1.5904 11 6 0.9112 -5.1680 -0.5469 12 6 0.4422 -6.4450 -0.7876 13 6 0.0841 -6.8228 -2.0674 14 6 0.1884 -5.9172 -3.1156 15 8 -0.1632 -6.2897 -4.3728 16 6 -0.1472 -5.3322 -5.3219 17 1 0.2145 -4.3426 -5.0847 18 6 -0.5950 -5.6180 -6.6026 19 7 -1.0361 -6.8233 -6.8916 20 14 -0.5722 -4.2917 -7.9178 21 1 0.8213 -3.8207 -8.1217 22 1 -1.0976 -4.8476 -9.1906 23 1 -1.4216 -3.1524 -7.4867 24 6 0.6537 -4.6320 -2.8766 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5091 28 1 4.4891 -1.3485 0.0072 29 1 2.6653 -3.2088 0.3678 30 1 0.9988 -2.6638 0.6738 31 1 1.5550 -2.3271 -2.0747 32 1 1.1952 -4.8772 0.4537 33 1 0.3602 -7.1510 0.0256 34 1 -0.2776 -7.8234 -2.2531 35 1 -1.3490 -7.0234 -7.7876 36 1 0.7356 -3.9262 -3.6900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = 72.290682 kcal Electronic energy + Delta-G solvation = -19758.020264 eV Core-core repulsion = 16630.452390 eV Total energy + Delta-G solvation = -3127.567874 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47261 -38.95320 -36.98389 -34.81863 -33.00251 -32.14844 -31.14763 -28.98036 -28.14923 -27.83723 -25.21579 -25.04906 -21.76871 -21.19533 -20.52684 -19.64155 -18.17569 -17.71259 -17.15063 -15.52938 -15.26542 -14.93375 -14.71400 -14.43316 -14.08583 -13.86899 -13.63419 -13.39011 -12.94247 -12.91875 -12.78339 -12.50089 -12.26555 -12.10735 -11.58119 -11.34598 -10.92410 -10.74831 -10.69193 -10.55490 -10.35322 -9.57661 -9.34682 -9.31536 -8.80863 -8.70361 -7.27818 -6.68748 -6.36006 -3.95106 1.63809 2.41953 2.45279 2.64093 2.64742 3.17523 3.19300 3.21293 4.03304 4.10552 4.48283 4.58148 4.77304 5.07113 5.11724 5.20817 5.33033 5.43490 5.51669 5.68652 5.75020 5.77943 5.83908 6.01120 6.06232 6.34612 6.43622 6.44518 6.72240 6.73308 7.01994 7.11808 7.21234 7.45147 7.45909 7.56197 7.75260 8.10580 8.11248 8.30744 9.10288 9.83668 10.82460 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.004369 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.722847 B = 6407.668214 C = 7555.414311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.095 3.905 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.439 0.561 6 C 0.078 3.922 7 C -0.251 4.251 8 C 0.211 3.789 9 N -0.750 5.750 10 C 0.250 3.750 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.180 6.180 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.866 5.866 20 Si 0.938 3.062 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.303 4.303 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.394 0.606 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 11.815 13.807 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 N -0.124 5.124 4 N -0.186 5.186 5 H 0.283 0.717 6 C -0.070 4.070 7 C -0.263 4.263 8 C 0.086 3.914 9 N -0.382 5.382 10 C 0.149 3.851 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.763 3.237 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.195 0.805 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.480 12.742 13.697 20.147 hybrid contribution 0.675 0.421 -0.952 1.241 sum 8.155 13.163 12.745 20.055 Atomic orbital electron populations 1.20262 0.86426 1.03956 1.03144 1.22343 0.97166 0.90025 0.97699 1.77313 0.86641 1.22555 1.25852 1.46222 1.07412 1.05471 1.59527 0.71692 1.22489 0.99405 0.85283 0.99863 1.20103 0.91963 0.96339 1.17879 1.19267 0.98676 0.88321 0.85154 1.44663 1.73801 1.11372 1.08369 1.17473 0.90763 0.83878 0.92999 1.20070 1.17855 0.95193 0.97163 1.20370 0.95472 0.94903 0.95161 1.20028 1.14258 1.00113 0.91457 1.19069 0.90073 0.91438 0.85910 1.83985 1.74790 1.36724 1.12778 1.21245 1.43929 0.92399 0.88897 0.89268 1.25247 0.96270 0.97546 0.97447 1.70028 1.39549 1.19393 1.21160 0.85829 0.78856 0.79663 0.79333 1.19676 1.20340 1.19594 1.20501 1.17671 0.98834 0.95660 0.90383 0.90855 0.89647 0.80478 0.92316 0.91998 0.77223 0.87824 0.87284 0.87024 0.92120 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.26 36.00 0.37 -0.43 16 2 C 0.10 1.12 7.22 -82.41 -0.59 0.52 16 3 N -0.30 -3.64 12.70 33.67 0.43 -3.21 16 4 N -0.48 -4.32 7.36 30.45 0.22 -4.10 16 5 H 0.44 2.46 8.96 -182.60 -1.64 0.82 16 6 C 0.08 0.70 11.90 -17.22 -0.20 0.49 16 7 C -0.25 -2.76 5.47 -105.06 -0.57 -3.33 16 8 C 0.21 2.49 5.02 -5.20 -0.03 2.47 16 9 N -0.75 -11.09 5.72 -59.83 -0.34 -11.43 16 10 C 0.25 4.64 6.65 -83.81 -0.56 4.08 16 11 C -0.28 -4.92 9.31 -39.33 -0.37 -5.28 16 12 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 13 C -0.24 -5.21 9.99 -39.36 -0.39 -5.60 16 14 C 0.19 4.71 6.64 -39.14 -0.26 4.45 16 15 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 16 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.87 -25.83 13.67 55.48 0.76 -25.07 16 20 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.30 -6.72 9.01 -39.20 -0.35 -7.07 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 28 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.06 0.66 7.93 -51.93 -0.41 0.24 16 30 H 0.06 0.73 7.96 -51.93 -0.41 0.31 16 31 H 0.39 5.78 8.47 -40.82 -0.35 5.43 16 32 H 0.10 1.54 6.73 -52.48 -0.35 1.19 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 2.76 5.64 -52.49 -0.30 2.46 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -33.46 314.18 -7.77 -41.23 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.39 Total: 7.83 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.16 Total: -20.63 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.07 Total: -43.82 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.46 -7.77 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.520 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds