Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30836 * 125.89631 * 2 1 4 4 N 1.40085 * 108.20455 * 180.15034 * 3 2 1 5 5 H 0.97005 * 126.03940 * 179.85838 * 4 3 2 6 6 C 1.34949 * 107.92399 * 359.58908 * 4 3 2 7 7 C 1.35317 * 107.74654 * 0.24602 * 6 4 3 8 8 C 1.50695 * 126.03876 * 179.97438 * 7 6 4 9 9 N 1.46495 * 109.47327 * 260.02046 * 8 7 6 10 10 C 1.39667 * 120.00281 * 180.02562 * 9 8 7 11 11 C 1.39006 * 120.04111 * 359.73173 * 10 9 8 12 12 C 1.38157 * 120.06163 * 179.70111 * 11 10 9 13 13 C 1.38163 * 120.14063 * 0.59037 * 12 11 10 14 14 C 1.38916 * 120.08296 * 359.68375 * 13 12 11 15 15 O 1.35752 * 120.03218 * 179.97438 * 14 13 12 16 16 C 1.34829 * 116.99816 * 174.48313 * 15 14 13 17 17 H 1.07999 * 120.00442 * 5.06387 * 16 15 14 18 18 C 1.38653 * 119.99693 * 185.06104 * 16 15 14 19 19 N 1.31557 * 120.00393 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47188 * 59.99362 * 20 18 16 22 22 H 1.48497 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46922 * 299.99856 * 20 18 16 24 24 C 1.38755 * 120.04296 * 180.02562 * 10 9 8 25 25 H 1.08997 * 109.47127 * 270.30005 * 1 2 3 26 26 H 1.09004 * 109.47571 * 30.30063 * 1 2 3 27 27 H 1.09000 * 109.47098 * 150.30103 * 1 2 3 28 28 H 1.08002 * 126.12668 * 180.26225 * 6 4 3 29 29 H 1.09005 * 109.47608 * 20.02601 * 8 7 6 30 30 H 1.08998 * 109.47171 * 140.02018 * 8 7 6 31 31 H 0.97000 * 119.99709 * 0.02562 * 9 8 7 32 32 H 1.08003 * 119.96572 * 359.97020 * 11 10 9 33 33 H 1.07999 * 119.92275 * 180.27561 * 12 11 10 34 34 H 1.08004 * 119.96078 * 179.70599 * 13 12 11 35 35 H 0.96994 * 120.00316 * 180.02562 * 19 18 16 36 36 H 1.08001 * 120.06851 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0035 5 1 4.3908 1.2080 -0.0062 6 6 3.6142 -0.7153 0.0036 7 6 2.3271 -1.1330 0.0058 8 6 1.8600 -2.5657 0.0129 9 7 1.4808 -2.9624 -1.3454 10 6 1.0125 -4.2552 -1.5904 11 6 0.9112 -5.1680 -0.5469 12 6 0.4422 -6.4450 -0.7876 13 6 0.0841 -6.8228 -2.0674 14 6 0.1884 -5.9172 -3.1156 15 8 -0.1632 -6.2897 -4.3728 16 6 -0.1472 -5.3322 -5.3219 17 1 0.2145 -4.3426 -5.0847 18 6 -0.5950 -5.6180 -6.6026 19 7 -1.0361 -6.8233 -6.8916 20 14 -0.5722 -4.2917 -7.9178 21 1 0.8213 -3.8207 -8.1217 22 1 -1.0976 -4.8476 -9.1906 23 1 -1.4216 -3.1524 -7.4867 24 6 0.6537 -4.6320 -2.8766 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5091 28 1 4.4891 -1.3485 0.0072 29 1 2.6653 -3.2088 0.3678 30 1 0.9988 -2.6638 0.6738 31 1 1.5550 -2.3271 -2.0747 32 1 1.1952 -4.8772 0.4537 33 1 0.3602 -7.1510 0.0256 34 1 -0.2776 -7.8234 -2.2531 35 1 -1.3490 -7.0234 -7.7876 36 1 0.7356 -3.9262 -3.6900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = 48.776463 kcal Electronic energy + Delta-G solvation = -19759.039918 eV Core-core repulsion = 16630.452390 eV Total energy + Delta-G solvation = -3128.587527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24843 -40.66612 -38.63973 -36.16748 -34.21186 -33.80432 -32.24052 -30.53356 -29.41903 -28.80810 -27.19963 -26.13082 -23.35421 -22.28266 -21.85763 -20.51714 -19.71073 -19.04504 -18.63238 -17.01142 -16.69379 -16.27450 -15.95579 -15.62308 -15.53711 -15.34066 -15.19284 -14.65212 -14.40068 -14.04440 -13.74561 -13.66672 -13.45292 -13.42974 -13.03426 -12.86179 -12.49355 -12.42264 -12.18947 -12.00185 -11.55912 -11.24852 -10.88602 -10.54119 -10.36320 -9.61494 -9.03152 -8.42296 -8.13043 -6.10205 0.84146 0.90277 1.00233 1.34916 1.46721 1.51187 1.56244 1.99920 2.20546 2.89270 2.93577 3.33690 3.65803 3.68979 3.90840 4.22915 4.28844 4.41284 4.49149 4.53937 4.68911 4.77133 4.77402 4.83862 4.97830 5.04911 5.15141 5.16925 5.20618 5.22253 5.54684 5.64354 5.81807 5.88227 6.10270 6.19189 6.41986 6.68288 6.71495 6.93713 7.03485 7.88176 8.81359 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.004369 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.722847 B = 6407.668214 C = 7555.414311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.082 3.918 3 N -0.334 5.334 4 N -0.470 5.470 5 H 0.453 0.547 6 C 0.096 3.904 7 C -0.274 4.274 8 C 0.212 3.788 9 N -0.739 5.739 10 C 0.260 3.740 11 C -0.261 4.261 12 C -0.026 4.026 13 C -0.264 4.264 14 C 0.152 3.848 15 O -0.235 6.235 16 C -0.409 4.409 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.923 5.923 20 Si 1.016 2.984 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.318 4.318 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.214 0.786 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.394 0.606 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.272 0.728 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.304 13.682 16.224 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 N -0.159 5.159 4 N -0.178 5.178 5 H 0.300 0.700 6 C -0.053 4.053 7 C -0.286 4.286 8 C 0.088 3.912 9 N -0.368 5.368 10 C 0.155 3.845 11 C -0.284 4.284 12 C -0.044 4.044 13 C -0.285 4.285 14 C 0.101 3.899 15 O -0.141 6.141 16 C -0.486 4.486 17 H 0.115 0.885 18 C -0.220 4.220 19 N -0.562 5.562 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.342 4.342 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.230 0.770 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.248 14.676 16.189 23.727 hybrid contribution 0.283 -0.059 -1.335 1.366 sum 9.531 14.617 14.854 22.916 Atomic orbital electron populations 1.20263 0.86045 1.03468 1.03869 1.22597 0.97780 0.90418 0.97632 1.77264 0.88020 1.23349 1.27223 1.46280 1.07096 1.06011 1.58443 0.69996 1.23018 0.99877 0.85328 0.97126 1.20078 0.92756 0.95636 1.20107 1.19422 0.99476 0.89224 0.83038 1.44849 1.72194 1.09735 1.10051 1.17538 0.89534 0.85654 0.91761 1.20569 1.15086 0.94205 0.98527 1.20832 0.93080 0.96071 0.94443 1.20252 1.15991 0.99710 0.92586 1.19647 0.91500 0.93431 0.85366 1.83943 1.77612 1.37944 1.14607 1.21730 1.44308 0.92919 0.89602 0.88483 1.26536 0.95572 1.00229 0.99705 1.70180 1.41972 1.22036 1.21966 0.84694 0.79553 0.76416 0.75814 1.18322 1.19513 1.18352 1.20502 1.18748 0.97786 0.97213 0.89058 0.90915 0.90494 0.76993 0.90481 0.91397 0.77210 0.83623 0.83049 0.87829 0.91947 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.26 71.24 0.73 -0.73 16 2 C 0.08 1.77 7.22 43.10 0.31 2.08 16 3 N -0.33 -7.46 12.70 -47.39 -0.60 -8.06 16 4 N -0.47 -7.07 7.36 -57.59 -0.42 -7.49 16 5 H 0.45 3.73 8.96 -213.32 -1.91 1.82 16 6 C 0.10 1.34 11.90 83.54 0.99 2.33 16 7 C -0.27 -5.11 5.47 -20.15 -0.11 -5.22 16 8 C 0.21 4.14 5.02 85.63 0.43 4.57 16 9 N -0.74 -19.78 5.72 -343.21 -1.96 -21.74 16 10 C 0.26 9.07 6.65 38.20 0.25 9.32 16 11 C -0.26 -8.11 9.31 22.43 0.21 -7.90 16 12 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16 13 C -0.26 -11.73 9.99 22.41 0.22 -11.51 16 14 C 0.15 7.85 6.64 22.56 0.15 8.00 16 15 O -0.23 -14.64 9.76 -22.75 -0.22 -14.86 16 16 C -0.41 -24.61 9.49 67.92 0.64 -23.97 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 19 N -0.92 -58.02 13.67 21.61 0.30 -57.73 16 20 Si 1.02 44.07 29.55 68.60 2.03 46.09 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.32 -14.35 9.01 22.52 0.20 -14.15 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.54 7.96 -2.39 -0.02 1.52 16 28 H 0.21 1.33 8.06 -2.91 -0.02 1.30 16 29 H 0.08 1.29 7.93 -2.38 -0.02 1.27 16 30 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 31 H 0.39 10.80 8.47 -92.71 -0.79 10.02 16 32 H 0.15 3.39 6.73 -2.91 -0.02 3.37 16 33 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.11 5.09 5.64 -2.91 -0.02 5.08 16 Total: -1.00 -78.02 314.18 2.27 -75.74 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -1.56 Total: 26.77 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.73 Total: -38.72 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -2.69 Total: -95.02 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -78.02 2.27 -75.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.520 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds