Wall clock time and date at job start Mon Mar 30 2020 01:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46567 * 2 1 4 4 H 1.09000 * 109.47385 * 54.99885 * 3 2 1 5 5 C 1.50697 * 109.46955 * 175.00206 * 3 2 1 6 6 H 1.07997 * 120.00415 * 119.99766 * 5 3 2 7 7 C 1.37885 * 119.99796 * 299.99914 * 5 3 2 8 8 N 1.31515 * 119.99843 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99766 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47056 * 90.00483 * 9 7 5 11 11 H 1.48500 * 109.46840 * 209.99985 * 9 7 5 12 12 H 1.48497 * 109.47542 * 329.99983 * 9 7 5 13 13 N 1.46497 * 109.47136 * 294.99734 * 3 2 1 14 14 C 1.34783 * 120.00194 * 84.99987 * 13 3 2 15 15 O 1.21586 * 119.99644 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99954 * 179.97438 * 14 13 3 17 17 C 1.39978 * 119.99222 * 184.62726 * 16 14 13 18 18 C 1.38988 * 119.99046 * 144.63699 * 17 16 14 19 19 C 1.38217 * 120.23546 * 180.27184 * 18 17 16 20 20 C 1.38016 * 120.22555 * 359.97438 * 19 18 17 21 21 C 1.39629 * 119.98659 * 359.97438 * 20 19 18 22 22 C 1.43199 * 120.11710 * 179.97438 * 21 20 19 23 23 N 7.80692 * 25.28777 * 346.82330 * 2 1 3 24 24 C 1.38573 * 119.99699 * 324.90161 * 17 16 14 25 25 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47373 * 299.99769 * 1 2 3 27 27 H 1.09002 * 109.47198 * 60.00477 * 1 2 3 28 28 H 1.08998 * 109.47024 * 240.00254 * 2 1 3 29 29 H 1.09002 * 109.47198 * 119.99523 * 2 1 3 30 30 H 0.97001 * 120.00172 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00285 * 265.00904 * 13 3 2 32 32 H 0.96993 * 119.99881 * 4.62415 * 16 14 13 33 33 H 1.07996 * 119.88751 * 0.26035 * 18 17 16 34 34 H 1.08000 * 119.89084 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00718 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.11445 * 359.71135 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5417 1.4445 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0962 0.1102 2.5707 10 1 2.8745 -1.3258 2.2646 11 1 3.7940 0.2362 3.8754 12 1 1.7880 0.8095 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6643 -1.3671 15 8 -0.3414 2.6325 -0.4319 16 7 0.0786 3.2673 -2.5186 17 6 -1.1460 3.9396 -2.6066 18 6 -1.2503 5.0961 -3.3704 19 6 -2.4556 5.7671 -3.4563 20 6 -3.5641 5.2930 -2.7846 21 6 -3.4702 4.1314 -2.0155 22 6 -4.6185 3.6374 -1.3169 23 7 -5.5288 3.2470 -0.7602 24 6 -2.2527 3.4551 -1.9278 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8770 0.4822 2.1128 31 1 2.2718 2.1231 -1.9978 32 1 0.6707 3.2353 -3.2861 33 1 -0.3865 5.4720 -3.8985 34 1 -2.5302 6.6655 -4.0510 35 1 -4.5041 5.8204 -2.8539 36 1 -2.1736 2.5564 -1.3342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:18 Heat of formation + Delta-G solvation = 32.716221 kcal Electronic energy + Delta-G solvation = -20282.933247 eV Core-core repulsion = 17153.649296 eV Total energy + Delta-G solvation = -3129.283952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57132 -38.93357 -36.62801 -35.71322 -34.40224 -32.49973 -31.62691 -31.41653 -29.45302 -27.41759 -24.11671 -23.37292 -22.53831 -21.12289 -19.93421 -19.21422 -18.40873 -16.48731 -16.40541 -16.24786 -15.79035 -15.23693 -14.74730 -14.36298 -14.04981 -13.96188 -13.56233 -13.22271 -13.13213 -12.88655 -12.66805 -12.38281 -12.03837 -11.88792 -11.85027 -11.64230 -11.14808 -10.96553 -10.69180 -10.31514 -9.96610 -9.72733 -9.45159 -9.28542 -9.06791 -8.81505 -8.38212 -8.02541 -6.25804 -4.28871 0.64315 1.20019 2.57681 2.80246 2.94372 3.20909 3.33604 3.38320 3.51039 3.79954 3.85431 4.27671 4.64379 4.72887 4.90019 4.95113 5.08089 5.27368 5.35333 5.69227 5.92326 5.98896 6.03125 6.11577 6.15096 6.18662 6.33585 6.57308 6.65823 6.75187 6.85857 6.90177 7.03604 7.22646 7.38376 7.42030 7.45577 8.19325 8.50945 8.72024 8.96371 9.34722 10.86109 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.004551 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.962623 B = 6150.478308 C = 6869.854288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.259 3.741 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.695 5.695 17 C 0.179 3.821 18 C -0.124 4.124 19 C -0.101 4.101 20 C -0.097 4.097 21 C -0.014 4.014 22 C 0.261 3.739 23 N -0.423 5.423 24 C -0.074 4.074 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.407 0.593 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 7.501 -12.489 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.155 3.845 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.359 5.359 14 C 0.394 3.606 15 O -0.455 6.455 16 N -0.343 5.343 17 C 0.083 3.917 18 C -0.146 4.146 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.018 4.018 22 C -0.054 4.054 23 N -0.098 5.098 24 C -0.097 4.097 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.243 0.757 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.559 6.740 -10.567 18.464 hybrid contribution 0.701 -0.369 -0.163 0.809 sum -12.858 6.371 -10.730 17.917 Atomic orbital electron populations 1.21868 0.96922 0.99031 1.02219 1.22316 0.94400 0.99997 1.01176 1.19099 0.95516 0.88208 0.81656 0.93113 1.21019 0.88494 1.40036 1.07947 0.90160 1.24811 0.94863 0.95080 0.97626 1.69858 1.08695 1.44328 1.29867 0.86916 0.80999 0.79982 0.80937 1.20200 1.22115 1.18387 1.45454 1.13307 1.58310 1.18848 1.16083 0.83578 0.78737 0.82153 1.90903 1.51832 1.64242 1.38506 1.42799 1.19466 1.57170 1.14872 1.17309 0.84846 0.91741 0.97837 1.21157 0.98942 0.93164 1.01305 1.20805 0.91718 0.99917 0.99565 1.21063 0.99538 0.94769 0.96473 1.15840 0.88500 0.97403 1.00051 1.25690 0.92917 0.93492 0.93331 1.81235 1.11169 1.08251 1.09139 1.21441 0.89013 1.00653 0.98620 0.95008 0.92805 0.93034 0.92266 0.92684 0.92205 0.77346 0.75738 0.84993 0.84765 0.85226 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.12 16 3 C 0.26 5.81 1.83 -69.08 -0.13 5.69 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 5 C -0.54 -13.91 9.31 -34.44 -0.32 -14.23 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 9 Si 0.88 21.29 24.41 -169.99 -4.15 17.14 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 N -0.71 -12.73 5.03 -59.81 -0.30 -13.03 16 14 C 0.69 11.74 6.97 -86.91 -0.61 11.13 16 15 O -0.58 -11.63 10.91 5.29 0.06 -11.57 16 16 N -0.69 -8.42 5.34 -14.26 -0.08 -8.49 16 17 C 0.18 2.07 6.29 -83.74 -0.53 1.55 16 18 C -0.12 -1.04 9.96 -39.31 -0.39 -1.44 16 19 C -0.10 -0.74 10.02 -39.67 -0.40 -1.13 16 20 C -0.10 -0.82 9.75 -39.14 -0.38 -1.20 16 21 C -0.01 -0.16 5.73 -106.96 -0.61 -0.77 16 22 C 0.26 3.47 15.33 -22.47 -0.34 3.13 16 23 N -0.42 -6.49 18.54 41.85 0.78 -5.71 16 24 C -0.07 -0.97 8.39 -38.97 -0.33 -1.29 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 27 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.39 6.05 8.56 -40.82 -0.35 5.70 16 32 H 0.41 3.51 8.84 -40.82 -0.36 3.15 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.15 2.38 6.23 -52.49 -0.33 2.05 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -31.63 305.03 -6.24 -37.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.97 Total: 6.26 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.95 Total: -2.06 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.17 Total: -52.23 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.06 Total: -11.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.15 Total: 17.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.63 -6.24 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.590 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds