Wall clock time and date at job start Mon Mar 30 2020 01:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46567 * 2 1 4 4 H 1.09000 * 109.47385 * 54.99885 * 3 2 1 5 5 C 1.50697 * 109.46955 * 175.00206 * 3 2 1 6 6 H 1.07997 * 120.00415 * 119.99766 * 5 3 2 7 7 C 1.37885 * 119.99796 * 299.99914 * 5 3 2 8 8 N 1.31515 * 119.99843 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99766 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47056 * 90.00483 * 9 7 5 11 11 H 1.48500 * 109.46840 * 209.99985 * 9 7 5 12 12 H 1.48497 * 109.47542 * 329.99983 * 9 7 5 13 13 N 1.46497 * 109.47136 * 294.99734 * 3 2 1 14 14 C 1.34783 * 120.00194 * 84.99987 * 13 3 2 15 15 O 1.21586 * 119.99644 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99954 * 179.97438 * 14 13 3 17 17 C 1.39978 * 119.99222 * 184.62726 * 16 14 13 18 18 C 1.38988 * 119.99046 * 144.63699 * 17 16 14 19 19 C 1.38217 * 120.23546 * 180.27184 * 18 17 16 20 20 C 1.38016 * 120.22555 * 359.97438 * 19 18 17 21 21 C 1.39629 * 119.98659 * 359.97438 * 20 19 18 22 22 C 1.43199 * 120.11710 * 179.97438 * 21 20 19 23 23 N 7.80692 * 25.28777 * 346.82330 * 2 1 3 24 24 C 1.38573 * 119.99699 * 324.90161 * 17 16 14 25 25 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47373 * 299.99769 * 1 2 3 27 27 H 1.09002 * 109.47198 * 60.00477 * 1 2 3 28 28 H 1.08998 * 109.47024 * 240.00254 * 2 1 3 29 29 H 1.09002 * 109.47198 * 119.99523 * 2 1 3 30 30 H 0.97001 * 120.00172 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00285 * 265.00904 * 13 3 2 32 32 H 0.96993 * 119.99881 * 4.62415 * 16 14 13 33 33 H 1.07996 * 119.88751 * 0.26035 * 18 17 16 34 34 H 1.08000 * 119.89084 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00718 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.11445 * 359.71135 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5417 1.4445 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0962 0.1102 2.5707 10 1 2.8745 -1.3258 2.2646 11 1 3.7940 0.2362 3.8754 12 1 1.7880 0.8095 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6643 -1.3671 15 8 -0.3414 2.6325 -0.4319 16 7 0.0786 3.2673 -2.5186 17 6 -1.1460 3.9396 -2.6066 18 6 -1.2503 5.0961 -3.3704 19 6 -2.4556 5.7671 -3.4563 20 6 -3.5641 5.2930 -2.7846 21 6 -3.4702 4.1314 -2.0155 22 6 -4.6185 3.6374 -1.3169 23 7 -5.5288 3.2470 -0.7602 24 6 -2.2527 3.4551 -1.9278 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8770 0.4822 2.1128 31 1 2.2718 2.1231 -1.9978 32 1 0.6707 3.2353 -3.2861 33 1 -0.3865 5.4720 -3.8985 34 1 -2.5302 6.6655 -4.0510 35 1 -4.5041 5.8204 -2.8539 36 1 -2.1736 2.5564 -1.3342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:18 Heat of formation + Delta-G solvation = 10.416106 kcal Electronic energy + Delta-G solvation = -20283.900253 eV Core-core repulsion = 17153.649296 eV Total energy + Delta-G solvation = -3130.250957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70597 -39.98870 -37.80034 -37.16112 -35.60167 -34.40280 -33.19693 -32.21250 -30.50619 -29.16286 -24.99482 -24.81424 -23.92569 -22.41059 -21.47126 -20.22996 -19.82051 -18.22808 -17.61054 -17.21122 -17.04039 -16.44429 -16.17007 -15.75063 -15.25740 -15.03751 -14.97278 -14.68693 -14.24870 -14.13706 -13.91845 -13.82205 -13.63377 -13.35892 -12.95201 -12.78054 -12.66317 -12.45848 -12.42089 -11.85998 -11.39532 -11.31762 -11.21910 -10.93732 -10.85173 -9.87765 -9.83901 -9.05443 -8.37315 -6.42033 -0.16887 0.41004 1.27574 1.36486 1.45455 1.53637 1.76862 1.89202 2.25598 2.26661 2.86691 2.97070 2.99774 3.41716 4.04352 4.19677 4.24994 4.25746 4.32784 4.44237 4.51206 4.59749 4.81830 4.94695 5.01661 5.11315 5.20097 5.29538 5.36341 5.42094 5.44910 5.50799 5.57068 5.67700 6.01181 6.01518 6.31059 6.40639 6.61279 7.16644 7.26172 7.66162 8.77695 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.004551 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.962623 B = 6150.478308 C = 6869.854288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.269 3.731 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.932 3.068 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.262 1.262 13 N -0.709 5.709 14 C 0.695 3.305 15 O -0.611 6.611 16 N -0.676 5.676 17 C 0.153 3.847 18 C -0.104 4.104 19 C -0.088 4.088 20 C -0.080 4.080 21 C -0.031 4.031 22 C 0.278 3.722 23 N -0.470 5.470 24 C -0.095 4.095 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.425 0.575 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 9.075 -14.745 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.163 3.837 4 H 0.040 0.960 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.571 5.571 9 Si 0.759 3.241 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.187 1.187 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.492 6.492 16 N -0.326 5.326 17 C 0.058 3.942 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.101 4.101 21 C -0.036 4.036 22 C -0.036 4.036 23 N -0.146 5.146 24 C -0.119 4.119 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.242 0.758 32 H 0.264 0.736 33 H 0.182 0.818 34 H 0.195 0.805 35 H 0.174 0.826 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.655 8.335 -12.894 21.224 hybrid contribution 1.013 -0.708 0.399 1.298 sum -13.642 7.627 -12.495 20.010 Atomic orbital electron populations 1.21740 0.95447 1.00211 1.01521 1.22232 0.95607 0.98763 1.01055 1.18646 0.93026 0.89182 0.82837 0.95976 1.21274 0.90255 1.38395 1.06932 0.92110 1.25464 0.95600 0.95922 0.99688 1.69960 1.10160 1.46166 1.30851 0.86111 0.79366 0.79976 0.78600 1.18703 1.22253 1.18652 1.45092 1.14356 1.58811 1.17880 1.16132 0.82674 0.78604 0.83042 1.90898 1.52612 1.65358 1.40283 1.42443 1.20049 1.56225 1.13832 1.17516 0.83824 0.93329 0.99542 1.21545 1.00625 0.91136 0.99194 1.21313 0.90281 1.00545 0.98509 1.21454 1.01302 0.92966 0.94410 1.15920 0.87162 0.98925 1.01552 1.26088 0.92688 0.92383 0.92414 1.81234 1.12802 1.09735 1.10801 1.21211 0.90629 1.00366 0.99658 0.92764 0.94710 0.92608 0.91076 0.93985 0.92107 0.75838 0.73579 0.81807 0.80454 0.82595 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.51 71.98 0.61 -4.44 16 2 C -0.14 -5.78 5.11 30.60 0.16 -5.63 16 3 C 0.27 12.13 1.83 44.25 0.08 12.21 16 4 H 0.02 1.15 6.63 -2.39 -0.02 1.13 16 5 C -0.53 -27.82 9.31 25.60 0.24 -27.58 16 6 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 7 C 0.03 1.84 5.45 84.66 0.46 2.30 16 8 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 9 Si 0.93 44.36 24.41 68.60 1.67 46.04 16 10 H -0.26 -11.75 6.83 99.48 0.68 -11.07 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.26 -12.47 6.53 99.48 0.65 -11.82 16 13 N -0.71 -25.21 5.03 -461.41 -2.32 -27.53 16 14 C 0.69 23.22 6.97 179.05 1.25 24.47 16 15 O -0.61 -25.07 10.91 -3.99 -0.04 -25.11 16 16 N -0.68 -15.23 5.34 -317.28 -1.70 -16.93 16 17 C 0.15 3.23 6.29 38.10 0.24 3.47 16 18 C -0.10 -1.28 9.96 22.44 0.22 -1.06 16 19 C -0.09 -0.80 10.02 22.21 0.22 -0.58 16 20 C -0.08 -1.06 9.75 22.55 0.22 -0.84 16 21 C -0.03 -0.68 5.73 -21.38 -0.12 -0.80 16 22 C 0.28 7.42 15.33 88.33 1.35 8.77 16 23 N -0.47 -14.71 18.54 19.01 0.35 -14.36 16 24 C -0.10 -2.45 8.39 22.67 0.19 -2.26 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 1.44 7.84 -2.38 -0.02 1.42 16 27 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.04 1.87 3.22 -2.39 -0.01 1.86 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.41 12.15 8.56 -92.71 -0.79 11.36 16 32 H 0.43 6.25 8.84 -92.71 -0.82 5.43 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.12 3.86 6.23 -2.91 -0.02 3.84 16 Total: -1.00 -71.81 305.03 2.84 -68.97 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.55 Total: 15.48 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.13 Total: 8.02 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -3.36 Total: -113.39 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.67 Total: 46.04 kcal Total: -71.81 2.84 -68.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.384 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds