Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40576 * 120.13725 * 2 1 4 4 C 1.34850 * 120.34325 * 179.97438 * 3 2 1 5 5 N 1.36680 * 120.63865 * 359.97438 * 4 3 2 6 6 C 1.36194 * 132.29596 * 180.35971 * 5 4 3 7 7 C 1.36571 * 107.09892 * 180.11348 * 6 5 4 8 8 C 1.47592 * 125.92456 * 179.84157 * 7 6 5 9 9 O 1.21588 * 119.99636 * 359.71311 * 8 7 6 10 10 N 1.34768 * 120.00304 * 179.71342 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.50706 * 109.47187 * 154.99900 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46848 * 60.00326 * 18 16 14 20 20 H 1.48500 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00475 * 18 16 14 22 22 N 1.34587 * 108.16232 * 359.57662 * 7 6 5 23 23 C 1.32239 * 109.01999 * 0.26641 * 22 7 6 24 24 C 1.35899 * 120.13148 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.46869 * 89.99975 * 1 2 3 26 26 H 1.08995 * 109.47422 * 210.00701 * 1 2 3 27 27 H 1.09004 * 109.46534 * 330.00183 * 1 2 3 28 28 H 1.07993 * 119.82662 * 359.96647 * 3 2 1 29 29 H 1.08000 * 119.68141 * 180.02562 * 4 3 2 30 30 H 1.08004 * 126.44938 * 359.94983 * 6 5 4 31 31 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 33 33 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 34 34 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 35 35 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 36 36 H 1.07994 * 120.33029 * 0.05034 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2157 0.0000 4 6 3.5613 1.2206 0.0005 5 7 4.2620 0.0471 0.0016 6 6 5.5968 -0.2233 0.0086 7 6 5.7313 -1.5824 0.0033 8 6 7.0059 -2.3265 0.0046 9 8 8.0618 -1.7236 0.0054 10 7 6.9995 -3.6741 0.0047 11 6 8.2647 -4.4127 0.0053 12 1 9.0025 -3.8688 0.5952 13 6 8.7692 -4.5614 -1.4314 14 6 8.0491 -5.7780 0.6059 15 1 7.0677 -6.0668 0.9520 16 6 9.1045 -6.6587 0.7124 17 7 10.2994 -6.3073 0.2905 18 14 8.8371 -8.3513 1.4562 19 1 7.8316 -9.0918 0.6525 20 1 10.1196 -9.0999 1.4569 21 1 8.3475 -8.2075 2.8508 22 7 4.5000 -2.1257 0.0027 23 6 3.6010 -1.1559 0.0016 24 6 2.1892 -1.1754 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3632 0.8901 0.5138 28 1 1.6722 2.1506 -0.0005 29 1 4.0927 2.1608 0.0009 30 1 6.3982 0.5008 0.0143 31 1 6.1571 -4.1552 0.0044 32 1 8.9252 -3.5738 -1.8657 33 1 8.0314 -5.1053 -2.0211 34 1 9.7109 -5.1105 -1.4308 35 1 11.0420 -6.9267 0.3658 36 1 1.6568 -2.1149 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058157334.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = 22.318824 kcal Electronic energy + Delta-G solvation = -19885.142932 eV Core-core repulsion = 16755.408116 eV Total energy + Delta-G solvation = -3129.734817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.88927 -40.49204 -38.54232 -36.75338 -35.28110 -34.30102 -31.96922 -31.09003 -30.53158 -27.97000 -27.36704 -25.35979 -23.95237 -22.71461 -22.47656 -21.04016 -19.40794 -18.61242 -17.75604 -17.34179 -17.15076 -17.02057 -16.10982 -15.88667 -15.67998 -15.51555 -14.99430 -14.76926 -14.41184 -14.22069 -13.74009 -13.38676 -13.04704 -12.94058 -12.91258 -12.77477 -12.62466 -12.49582 -12.29787 -12.16385 -11.60260 -11.46952 -11.16334 -11.02346 -10.61400 -10.02592 -9.72308 -8.88175 -8.19127 -6.36984 -0.32618 0.17777 1.05097 1.43194 1.46135 1.46993 1.54881 2.31939 2.34213 2.55210 2.58042 3.03252 3.10585 3.51826 3.73325 3.81468 4.12811 4.15285 4.31165 4.47495 4.69089 4.71495 4.82136 4.89555 4.90806 5.02765 5.04358 5.20315 5.30086 5.37959 5.43460 5.55120 5.58188 5.64256 5.83166 6.00674 6.05578 6.56211 6.67980 6.92292 7.25950 7.42161 8.87472 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.003719 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.574726 B = 7527.743180 C = 8214.135311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.127 4.127 4 C 0.047 3.953 5 N -0.369 5.369 6 C -0.018 4.018 7 C -0.019 4.019 8 C 0.582 3.418 9 O -0.588 6.588 10 N -0.689 5.689 11 C 0.269 3.731 12 H 0.006 0.994 13 C -0.133 4.133 14 C -0.553 4.553 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.271 1.271 22 N -0.507 5.507 23 C 0.219 3.781 24 C -0.117 4.117 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.198 0.802 29 H 0.202 0.798 30 H 0.213 0.787 31 H 0.405 0.595 32 H 0.014 0.986 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.268 0.732 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.369 17.039 -1.011 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.041 5.041 6 C -0.154 4.154 7 C -0.150 4.150 8 C 0.367 3.633 9 O -0.470 6.470 10 N -0.336 5.336 11 C 0.167 3.833 12 H 0.024 0.976 13 C -0.192 4.192 14 C -0.591 4.591 15 H 0.085 0.915 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.800 3.200 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.196 1.196 22 N -0.229 5.229 23 C -0.027 4.027 24 C -0.137 4.137 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.215 0.785 29 H 0.219 0.781 30 H 0.230 0.770 31 H 0.239 0.761 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.488 16.523 -1.032 27.126 hybrid contribution 0.561 -0.512 0.287 0.812 sum -20.927 16.011 -0.745 26.360 Atomic orbital electron populations 1.20897 0.86937 1.04792 1.04090 1.20272 0.98831 0.91323 0.94847 1.21355 0.91503 1.00635 1.01202 1.22517 0.94030 0.88481 1.02223 1.42911 1.06381 1.08777 1.46010 1.22734 0.84772 0.96991 1.10904 1.20550 0.91933 0.92325 1.10237 1.17439 0.86710 0.82668 0.76451 1.90699 1.32703 1.69491 1.54064 1.46202 1.11325 1.05299 1.70727 1.18478 0.80819 0.90327 0.93714 0.97641 1.21903 1.02246 0.97929 0.97088 1.21480 0.96636 0.98984 1.42030 0.91483 1.25801 0.94401 1.02812 0.95308 1.70029 1.01023 1.37664 1.46616 0.85347 0.77645 0.78151 0.78886 1.18957 1.20542 1.19638 1.70740 0.98252 1.30626 1.23304 1.21472 0.95458 0.80347 1.05416 1.20392 0.86452 1.01521 1.05327 0.89196 0.90613 0.88649 0.78538 0.78107 0.77008 0.76063 0.96648 0.94417 0.90794 0.92297 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.02 71.24 0.71 0.14 16 2 C -0.05 -0.57 5.88 -19.84 -0.12 -0.69 16 3 C -0.13 -1.15 9.67 22.06 0.21 -0.94 16 4 C 0.05 0.65 10.93 83.16 0.91 1.56 16 5 N -0.37 -9.26 2.93 -351.24 -1.03 -10.29 16 6 C -0.02 -0.57 11.47 83.63 0.96 0.39 16 7 C -0.02 -0.75 6.94 40.80 0.28 -0.47 16 8 C 0.58 28.18 7.78 86.71 0.68 28.85 16 9 O -0.59 -31.56 16.53 -3.99 -0.07 -31.62 16 10 N -0.69 -34.62 5.07 -449.22 -2.28 -36.89 16 11 C 0.27 15.38 2.56 44.25 0.11 15.49 16 12 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 13 C -0.13 -7.28 9.26 71.98 0.67 -6.62 16 14 C -0.55 -31.86 8.73 25.60 0.22 -31.64 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.02 0.96 5.30 84.65 0.45 1.41 16 17 N -0.92 -54.37 11.32 21.45 0.24 -54.13 16 18 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 N -0.51 -19.20 11.01 -183.48 -2.02 -21.22 16 23 C 0.22 6.47 7.79 134.20 1.05 7.51 16 24 C -0.12 -2.40 9.75 22.45 0.22 -2.18 16 25 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 27 H 0.09 0.11 8.10 -2.38 -0.02 0.09 16 28 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 29 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.21 5.50 8.06 -2.91 -0.02 5.47 16 31 H 0.40 19.07 8.24 -92.71 -0.76 18.31 16 32 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 4.30 6.07 -2.38 -0.01 4.29 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -78.69 314.57 3.57 -75.11 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.34 Total: 20.08 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.35 Total: 12.82 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -5.08 Total: -122.53 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.07 Total: -31.62 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -78.69 3.57 -75.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058157334.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.433 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds