Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47138 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46837 * 120.00480 * 9 7 5 12 12 H 1.48504 * 109.47133 * 239.99867 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21565 * 119.99932 * 0.02562 * 14 13 3 16 16 C 1.47696 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.40322 * 119.86917 * 0.02562 * 16 14 13 18 18 C 1.36017 * 120.54518 * 179.97438 * 17 16 14 19 19 C 1.40303 * 120.03886 * 359.97006 * 18 17 16 20 20 C 1.41475 * 133.36654 * 179.97438 * 19 18 17 21 21 N 1.30195 * 108.71921 * 180.02562 * 20 19 18 22 22 N 1.40012 * 109.79098 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.96814 * 180.02562 * 22 21 20 24 24 C 1.37264 * 108.05665 * 359.97438 * 22 21 20 25 25 C 1.38911 * 133.66241 * 180.26159 * 24 22 21 26 26 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 27 27 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 28 28 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 31 31 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 33 33 H 1.08004 * 119.72571 * 359.97438 * 17 16 14 34 34 H 1.07997 * 119.98078 * 179.97438 * 18 17 16 35 35 H 1.07996 * 125.63706 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.19200 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5174 -1.4631 12 1 6.3990 1.6168 -2.6103 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3415 2.6318 0.4323 16 6 0.0442 3.3242 2.6292 17 6 0.9425 3.3597 3.7066 18 6 0.5971 3.9641 4.8751 19 6 -0.6661 4.5595 5.0112 20 6 -1.3072 5.2469 6.0686 21 7 -2.4959 5.6033 5.6751 22 7 -2.7058 5.1800 4.3571 23 1 -3.5106 5.3219 3.8345 24 6 -1.5734 4.5302 3.9335 25 6 -1.2092 3.9156 2.7422 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0611 -2.9498 32 1 2.2734 2.1266 1.9964 33 1 1.9164 2.9033 3.6071 34 1 1.2954 3.9857 5.6986 35 1 -0.8809 5.4434 7.0412 36 1 -1.8980 3.8918 1.9106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061670815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = 45.039291 kcal Electronic energy + Delta-G solvation = -20275.211289 eV Core-core repulsion = 17146.461706 eV Total energy + Delta-G solvation = -3128.749583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54536 -39.27658 -36.74952 -35.08201 -32.66384 -32.45017 -31.18463 -29.83951 -29.47964 -27.00720 -24.15124 -22.81029 -22.58224 -21.77470 -20.41149 -19.43724 -18.31294 -17.19511 -16.51894 -15.65446 -15.49656 -15.08411 -14.80107 -14.58663 -14.45808 -13.99927 -13.77741 -13.16743 -12.76312 -12.49391 -12.29351 -11.72234 -11.43956 -11.28634 -11.17570 -11.09531 -10.97509 -10.85883 -10.52264 -10.32843 -10.20176 -9.65097 -9.17950 -9.05594 -8.70132 -8.52492 -8.17246 -7.85689 -6.14427 -4.23936 0.56868 1.38781 2.28930 2.52099 3.22681 3.29645 3.31098 3.33312 3.98052 4.11196 4.34764 4.42619 4.57111 4.77959 5.10345 5.16938 5.23374 5.28157 5.48853 5.65024 5.88141 6.20145 6.32158 6.38179 6.39542 6.45045 6.64698 6.67884 7.03292 7.09194 7.18195 7.33654 7.37992 7.40280 7.60063 7.70827 7.87537 8.15603 8.60885 8.74446 9.05696 9.43370 10.90983 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.004102 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.594702 B = 6824.559994 C = 7398.502955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.540 3.460 15 O -0.543 6.543 16 C -0.069 4.069 17 C -0.128 4.128 18 C -0.049 4.049 19 C -0.169 4.169 20 C 0.071 3.929 21 N -0.253 5.253 22 N -0.505 5.505 23 H 0.442 0.558 24 C 0.119 3.881 25 C -0.085 4.085 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.193 0.807 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 6.437 14.173 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.345 5.345 14 C 0.325 3.675 15 O -0.423 6.423 16 C -0.075 4.075 17 C -0.148 4.148 18 C -0.070 4.070 19 C -0.177 4.177 20 C -0.124 4.124 21 N -0.069 5.069 22 N -0.221 5.221 23 H 0.287 0.713 24 C 0.002 3.998 25 C -0.108 4.108 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.210 0.790 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.789 6.896 13.624 17.142 hybrid contribution 1.573 -0.368 -0.274 1.638 sum -6.217 6.528 13.350 16.109 Atomic orbital electron populations 1.21850 0.98361 0.98113 1.01238 1.21940 0.92620 0.99682 1.02395 1.18851 0.94352 0.89253 0.80788 0.93115 1.21261 0.90608 1.39059 1.06378 0.91956 1.24883 0.98639 0.94757 0.95364 1.69902 1.35070 1.37582 1.09335 0.86399 0.84814 0.77779 0.78146 1.19701 1.20876 1.20890 1.46468 1.14153 1.55092 1.18768 1.18054 0.83201 0.79569 0.86654 1.90749 1.51537 1.60050 1.39916 1.20152 0.93929 0.98328 0.95111 1.20878 0.99931 1.01279 0.92711 1.20272 0.93744 0.95329 0.97624 1.19073 0.96907 1.07294 0.94410 1.23920 0.91350 0.97482 0.99697 1.76638 1.18442 1.18629 0.93152 1.46082 1.14863 1.50142 1.10988 0.71311 1.18771 0.88322 0.97043 0.95619 1.20151 0.96989 0.98551 0.95121 0.94283 0.93120 0.95802 0.88191 0.94927 0.92590 0.77714 0.84823 0.84941 0.78975 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.70 -14.05 4.97 -55.93 -0.28 -14.33 16 14 C 0.54 10.59 6.33 -12.39 -0.08 10.51 16 15 O -0.54 -12.37 13.45 5.31 0.07 -12.30 16 16 C -0.07 -1.07 5.87 -104.95 -0.62 -1.69 16 17 C -0.13 -1.62 9.45 -39.60 -0.37 -2.00 16 18 C -0.05 -0.53 10.04 -39.60 -0.40 -0.92 16 19 C -0.17 -1.99 6.17 -106.88 -0.66 -2.65 16 20 C 0.07 0.71 12.04 -17.01 -0.20 0.51 16 21 N -0.25 -2.94 12.57 30.86 0.39 -2.55 16 22 N -0.50 -5.70 7.45 32.35 0.24 -5.46 16 23 H 0.44 3.76 8.96 -182.66 -1.64 2.12 16 24 C 0.12 1.54 7.32 -84.17 -0.62 0.92 16 25 C -0.09 -1.23 9.61 -39.03 -0.38 -1.61 16 26 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 6.74 6.53 -40.82 -0.27 6.47 16 33 H 0.13 1.49 6.36 -52.48 -0.33 1.16 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 2.01 7.62 -52.49 -0.40 1.61 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -31.01 302.58 -8.39 -39.39 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.27 Total: 7.94 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.70 Total: -8.79 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.98 Total: -45.97 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.01 -8.39 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061670815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.432 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds