Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94906 * 2 1 4 4 C 1.35784 * 109.64625 * 179.97438 * 3 2 1 5 5 C 1.39735 * 133.60201 * 180.02562 * 4 3 2 6 6 C 1.36605 * 119.88505 * 180.02562 * 5 4 3 7 7 C 1.38766 * 120.67061 * 359.97438 * 6 5 4 8 8 C 1.37853 * 120.45492 * 359.97438 * 7 6 5 9 9 C 1.38836 * 119.68764 * 0.02562 * 8 7 6 10 10 N 1.36038 * 124.95277 * 179.97438 * 2 1 3 11 11 C 1.46494 * 126.34751 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.47438 * 270.04874 * 11 10 2 13 13 O 1.21281 * 119.99609 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00083 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99713 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46792 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00119 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99805 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46889 * 89.99877 * 20 18 16 22 22 H 1.48497 * 109.47167 * 209.99955 * 20 18 16 23 23 H 1.48500 * 109.47176 * 330.00256 * 20 18 16 24 24 H 1.08999 * 109.46974 * 270.01832 * 1 2 3 25 25 H 1.09006 * 109.47039 * 30.02397 * 1 2 3 26 26 H 1.09000 * 109.46923 * 150.02066 * 1 2 3 27 27 H 1.08000 * 120.05641 * 359.97438 * 5 4 3 28 28 H 1.07999 * 119.66329 * 179.72373 * 6 5 4 29 29 H 1.08007 * 119.77548 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.15999 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46903 * 30.04846 * 11 10 2 32 32 H 1.09005 * 109.47114 * 150.04775 * 11 10 2 33 33 H 0.97002 * 119.99809 * 359.97438 * 14 12 11 34 34 H 1.09001 * 109.47180 * 299.99417 * 15 14 12 35 35 H 1.08994 * 109.47702 * 59.99938 * 15 14 12 36 36 H 0.96996 * 119.99530 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9531 0.7671 0.0012 7 6 5.9931 -0.6200 0.0010 8 6 4.8254 -1.3527 0.0013 9 6 3.6019 -0.6964 0.0014 10 7 2.2863 -1.1150 0.0005 11 6 1.8167 -2.5026 0.0016 12 6 1.6550 -2.9771 1.4228 13 8 1.9077 -2.2298 2.3440 14 7 1.2305 -4.2322 1.6701 15 6 1.0728 -4.6932 3.0517 16 6 0.5898 -6.1207 3.0528 17 1 0.4171 -6.6331 2.1178 18 6 0.3682 -6.7727 4.2473 19 7 -0.0528 -8.0186 4.2483 20 14 0.6662 -5.8862 5.8644 21 1 -0.5812 -5.2030 6.2915 22 1 1.0718 -6.8695 6.9006 23 1 1.7449 -4.8812 5.6866 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.7390 2.5096 0.0010 28 1 6.8758 1.3284 -0.0028 29 1 6.9456 -1.1291 0.0005 30 1 4.8621 -2.4320 0.0016 31 1 0.8574 -2.5619 -0.5126 32 1 2.5434 -3.1326 -0.5113 33 1 1.0288 -4.8299 0.9333 34 1 2.0318 -4.6334 3.5664 35 1 0.3455 -4.0636 3.5641 36 1 -0.2090 -8.4770 5.0887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082190396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = 35.413231 kcal Electronic energy + Delta-G solvation = -20207.735681 eV Core-core repulsion = 17078.568681 eV Total energy + Delta-G solvation = -3129.167001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.19532 -39.14760 -37.36633 -34.60542 -34.07931 -32.50507 -31.46942 -30.53770 -28.86112 -27.56425 -26.87871 -22.60260 -22.11609 -21.98418 -20.59944 -19.79817 -17.77145 -17.38019 -17.13217 -16.38315 -15.38716 -15.20680 -15.14496 -15.11169 -14.18790 -14.01114 -13.90429 -13.33143 -13.16541 -13.08643 -12.92361 -12.62013 -12.46270 -11.98071 -11.90070 -11.52711 -11.45055 -11.14129 -10.86624 -10.59954 -10.07324 -9.91314 -9.62731 -9.50179 -8.89703 -8.38661 -8.24391 -8.03716 -6.31656 -4.35223 0.98019 1.54385 2.43546 2.79925 2.84886 3.19405 3.26760 3.34536 3.70941 3.92905 4.13430 4.24255 4.42077 4.57455 4.84061 4.97827 4.99392 5.03659 5.07942 5.15519 5.38764 5.40791 5.45320 5.61276 5.72406 5.75691 6.13415 6.46711 6.51487 6.55286 6.63138 6.89511 6.91383 6.96211 7.10733 7.23185 7.92053 7.94143 8.30918 8.55908 8.69311 9.27482 10.80013 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.004230 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.927229 B = 6617.165859 C = 7048.324286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.297 3.703 3 N -0.499 5.499 4 C 0.049 3.951 5 C -0.069 4.069 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.104 4.104 9 C 0.057 3.943 10 N -0.470 5.470 11 C 0.088 3.912 12 C 0.480 3.520 13 O -0.537 6.537 14 N -0.698 5.698 15 C 0.222 3.778 16 C -0.548 4.548 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.889 5.889 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.398 0.602 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 13.220 -12.186 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 N -0.220 5.220 4 C -0.069 4.069 5 C -0.089 4.089 6 C -0.151 4.151 7 C -0.128 4.128 8 C -0.125 4.125 9 C -0.051 4.051 10 N -0.159 5.159 11 C -0.039 4.039 12 C 0.262 3.738 13 O -0.415 6.415 14 N -0.348 5.348 15 C 0.100 3.900 16 C -0.585 4.585 17 H 0.099 0.901 18 C -0.124 4.124 19 N -0.526 5.526 20 Si 0.702 3.298 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.186 1.186 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.232 0.768 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.863 14.278 -11.377 19.175 hybrid contribution 0.242 -1.064 0.682 1.287 sum 6.106 13.214 -10.696 18.063 Atomic orbital electron populations 1.20409 0.84443 1.04287 1.04631 1.23565 0.95694 0.80494 0.97048 1.70398 1.00882 1.27037 1.23639 1.19015 0.92099 0.90274 1.05474 1.19956 0.89214 0.99539 1.00144 1.20587 0.97304 0.94341 1.02878 1.20827 0.97102 0.93978 1.00881 1.19979 0.89234 0.99488 1.03801 1.18812 0.85134 0.95206 1.05989 1.44716 1.04827 1.06151 1.60229 1.21704 1.03678 0.81157 0.97361 1.20640 0.79222 0.83347 0.90544 1.90745 1.50358 1.54807 1.45544 1.46155 1.65164 1.11951 1.11516 1.19540 0.96888 0.95513 0.78078 1.21044 1.47122 0.95053 0.95306 0.90137 1.24779 0.93809 0.94690 0.99158 1.69869 1.44549 1.10641 1.27559 0.86835 0.79738 0.79963 0.83272 1.19751 1.20735 1.18606 0.89024 0.88594 0.90286 0.85617 0.85589 0.85441 0.86204 0.86079 0.86458 0.76772 0.95588 0.95995 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.17 36.00 0.37 -0.46 16 2 C 0.30 4.40 7.85 -154.82 -1.22 3.18 16 3 N -0.50 -8.33 11.27 -8.23 -0.09 -8.43 16 4 C 0.05 0.80 7.23 -84.70 -0.61 0.19 16 5 C -0.07 -0.93 10.05 -39.61 -0.40 -1.32 16 6 C -0.13 -1.49 9.96 -39.98 -0.40 -1.88 16 7 C -0.11 -1.26 10.03 -39.53 -0.40 -1.65 16 8 C -0.10 -1.42 10.05 -39.50 -0.40 -1.82 16 9 C 0.06 0.90 6.88 -83.98 -0.58 0.32 16 10 N -0.47 -6.96 2.29 -112.43 -0.26 -7.21 16 11 C 0.09 1.07 6.41 -5.20 -0.03 1.04 16 12 C 0.48 8.38 7.90 -10.98 -0.09 8.29 16 13 O -0.54 -12.00 16.43 5.56 0.09 -11.91 16 14 N -0.70 -12.78 5.55 -61.47 -0.34 -13.12 16 15 C 0.22 5.19 4.50 -5.19 -0.02 5.17 16 16 C -0.55 -14.37 9.83 -34.44 -0.34 -14.71 16 17 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -25.68 13.96 55.43 0.77 -24.90 16 20 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.63 7.01 -51.93 -0.36 0.26 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.04 7.00 -51.93 -0.36 0.68 16 32 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.40 6.09 8.32 -40.82 -0.34 5.75 16 34 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -35.03 313.96 -8.35 -43.38 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.37 Total: 2.73 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.21 Total: -1.56 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.08 Total: -53.67 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.03 -8.35 -43.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082190396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.789 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds