Wall clock time and date at job start Mon Mar 30 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.88329 * 2 1 4 4 C 1.37971 * 120.22753 * 180.27299 * 3 2 1 5 5 C 1.39675 * 119.98470 * 359.71895 * 4 3 2 6 6 C 1.43208 * 120.11459 * 179.97438 * 5 4 3 7 7 N 4.80222 * 137.04905 * 0.29628 * 3 1 2 8 8 C 1.39512 * 119.76871 * 0.02562 * 5 4 3 9 9 C 1.38620 * 119.77122 * 359.97438 * 8 5 4 10 10 N 1.39975 * 119.99099 * 180.02562 * 9 8 5 11 11 C 1.34777 * 120.00266 * 335.14785 * 10 9 8 12 12 O 1.21591 * 119.99860 * 354.24588 * 11 10 9 13 13 N 1.34772 * 119.99770 * 174.51476 * 11 10 9 14 14 C 1.46506 * 119.99794 * 179.72592 * 13 11 10 15 15 H 1.08997 * 109.47056 * 325.00405 * 14 13 11 16 16 C 1.52998 * 109.47029 * 85.00593 * 14 13 11 17 17 C 1.50700 * 109.47183 * 205.00123 * 14 13 11 18 18 H 1.08007 * 119.99673 * 0.02562 * 17 14 13 19 19 C 1.37873 * 120.00283 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00247 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99577 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47145 * 90.00211 * 21 19 17 23 23 H 1.48507 * 109.47127 * 209.99940 * 21 19 17 24 24 H 1.48493 * 109.47550 * 329.99961 * 21 19 17 25 25 H 1.08997 * 109.47229 * 270.28132 * 1 2 3 26 26 H 1.09003 * 109.47121 * 30.27749 * 1 2 3 27 27 H 1.08993 * 109.47265 * 150.27454 * 1 2 3 28 28 H 1.07997 * 119.88827 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00766 * 179.70466 * 4 3 2 30 30 H 1.08000 * 120.11169 * 180.02562 * 8 5 4 31 31 H 0.97002 * 119.99708 * 155.15278 * 10 9 8 32 32 H 0.96999 * 120.00341 * 359.73324 * 13 11 10 33 33 H 1.09005 * 109.46754 * 299.99598 * 16 14 13 34 34 H 1.08997 * 109.47354 * 59.99995 * 16 14 13 35 35 H 1.08997 * 109.47289 * 180.02562 * 16 14 13 36 36 H 0.97002 * 120.00021 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5756 1.2071 -0.0057 5 6 4.2809 0.0015 -0.0055 6 6 5.7129 0.0069 -0.0120 7 7 6.8489 0.0111 -0.0169 8 6 3.5854 -1.2079 -0.0001 9 6 2.1992 -1.2047 0.0055 10 7 1.4968 -2.4154 0.0115 11 6 2.0726 -3.5311 -0.4786 12 8 3.1592 -3.4666 -1.0205 13 7 1.4416 -4.7173 -0.3728 14 6 2.0649 -5.9290 -0.9109 15 1 2.6171 -5.6817 -1.8175 16 6 3.0246 -6.5131 0.1276 17 6 0.9970 -6.9422 -1.2339 18 1 -0.0420 -6.7068 -1.0564 19 6 1.3464 -8.1696 -1.7558 20 7 0.4145 -9.0535 -2.0380 21 14 3.1436 -8.5768 -2.0619 22 1 3.7223 -9.2064 -0.8478 23 1 3.2500 -9.5177 -3.2059 24 1 3.8873 -7.3304 -2.3754 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6522 2.1319 -0.0004 29 1 4.1100 2.1455 -0.0105 30 1 4.1252 -2.1433 0.0004 31 1 0.5955 -2.4515 0.3683 32 1 0.5748 -4.7687 0.0594 33 1 3.7970 -5.7803 0.3612 34 1 2.4723 -6.7605 1.0342 35 1 3.4886 -7.4144 -0.2728 36 1 0.6604 -9.9172 -2.4049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158784560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:18 Heat of formation + Delta-G solvation = 31.051317 kcal Electronic energy + Delta-G solvation = -20062.290928 eV Core-core repulsion = 16932.934780 eV Total energy + Delta-G solvation = -3129.356147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.71548 -38.93046 -36.68026 -35.42063 -34.53798 -32.80658 -32.50735 -30.54972 -29.07000 -27.61496 -25.24852 -23.53993 -22.49150 -21.39854 -20.10958 -19.26498 -18.42707 -16.49083 -16.26547 -15.75533 -15.59079 -15.17195 -14.85386 -14.31152 -14.14679 -13.89094 -13.60353 -13.33114 -13.18510 -13.02036 -12.98654 -12.36927 -12.24649 -12.10118 -11.88304 -11.70510 -11.57672 -11.39927 -10.85276 -10.48436 -10.23775 -9.81275 -9.52345 -9.30248 -8.88914 -8.82849 -8.41443 -7.97089 -6.26160 -4.29451 0.65242 1.24014 2.60823 2.79706 2.91231 3.20800 3.33492 3.37671 3.48802 3.83381 3.86935 4.27425 4.58090 4.63140 4.70998 4.90749 5.08976 5.11803 5.26714 5.35814 5.48319 5.72263 5.78181 5.98849 6.19661 6.21899 6.27113 6.30617 6.35589 6.49592 6.73081 6.88389 6.95150 7.19085 7.33546 7.44631 7.45905 8.17540 8.47966 8.70813 8.91448 9.34192 10.85826 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004495 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.032727 B = 6228.232715 C = 7241.059498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.098 4.098 5 C -0.016 4.016 6 C 0.262 3.738 7 N -0.424 5.424 8 C -0.082 4.082 9 C 0.183 3.817 10 N -0.688 5.688 11 C 0.693 3.307 12 O -0.580 6.580 13 N -0.708 5.708 14 C 0.252 3.748 15 H 0.051 0.949 16 C -0.163 4.163 17 C -0.537 4.537 18 H 0.081 0.919 19 C 0.080 3.920 20 N -0.891 5.891 21 Si 0.885 3.115 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.261 1.261 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.394 0.606 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 18.980 6.573 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.102 4.102 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.020 4.020 6 C -0.053 4.053 7 N -0.100 5.100 8 C -0.105 4.105 9 C 0.086 3.914 10 N -0.335 5.335 11 C 0.394 3.606 12 O -0.458 6.458 13 N -0.359 5.359 14 C 0.149 3.851 15 H 0.069 0.931 16 C -0.221 4.221 17 C -0.575 4.575 18 H 0.099 0.901 19 C -0.124 4.124 20 N -0.528 5.528 21 Si 0.714 3.286 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.186 1.186 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.177 0.823 31 H 0.244 0.756 32 H 0.227 0.773 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.857 18.667 5.979 19.620 hybrid contribution -0.430 -0.530 0.176 0.705 sum 0.427 18.137 6.155 19.157 Atomic orbital electron populations 1.20798 0.90563 1.03560 1.02635 1.19814 0.96447 0.91551 1.02427 1.20674 0.93284 0.97127 1.00744 1.21010 0.94165 0.96401 1.00343 1.15815 0.84296 0.94465 1.07463 1.25675 0.92652 0.93451 0.93511 1.81218 1.12111 1.07592 1.09055 1.21549 0.92923 0.98528 0.97508 1.17163 0.90622 0.84554 0.99103 1.42839 1.19034 1.06581 1.65038 1.16139 0.84546 0.80507 0.79424 1.90859 1.21061 1.85125 1.48782 1.45502 1.22973 1.06023 1.61380 1.19067 0.92861 0.80746 0.92440 0.93134 1.22481 0.99212 0.99578 1.00839 1.21001 0.93836 0.98293 1.44382 0.90148 1.24802 0.97607 0.95731 0.94248 1.69856 1.32963 1.06966 1.42972 0.86890 0.85421 0.78882 0.77391 1.20251 1.22089 1.18592 0.90705 0.90748 0.91261 0.84818 0.85238 0.82282 0.75642 0.77265 0.94464 0.92764 0.93331 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.44 36.01 0.34 -0.43 16 2 C -0.10 -0.90 5.90 -104.35 -0.62 -1.51 16 3 C -0.10 -0.78 9.67 -39.67 -0.38 -1.17 16 4 C -0.10 -0.87 9.75 -39.14 -0.38 -1.26 16 5 C -0.02 -0.20 5.73 -106.96 -0.61 -0.81 16 6 C 0.26 3.62 15.33 -22.47 -0.34 3.27 16 7 N -0.42 -6.69 18.54 41.84 0.78 -5.92 16 8 C -0.08 -1.13 8.42 -38.97 -0.33 -1.46 16 9 C 0.18 2.24 6.40 -83.74 -0.54 1.70 16 10 N -0.69 -8.71 4.97 -14.26 -0.07 -8.78 16 11 C 0.69 12.14 8.33 -86.92 -0.72 11.42 16 12 O -0.58 -12.26 13.17 5.29 0.07 -12.19 16 13 N -0.71 -12.96 5.07 -59.81 -0.30 -13.27 16 14 C 0.25 5.76 2.15 -69.08 -0.15 5.61 16 15 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 16 C -0.16 -3.52 8.96 37.16 0.33 -3.18 16 17 C -0.54 -13.97 9.31 -34.44 -0.32 -14.29 16 18 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 20 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 21 Si 0.88 21.36 24.37 -169.99 -4.14 17.22 16 22 H -0.28 -6.45 6.87 56.52 0.39 -6.07 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.07 0.48 6.97 -51.93 -0.36 0.12 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.16 2.65 5.79 -52.49 -0.30 2.35 16 31 H 0.41 3.78 7.41 -40.82 -0.30 3.47 16 32 H 0.39 6.12 8.56 -40.82 -0.35 5.77 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -32.02 308.99 -6.03 -38.05 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.97 Total: 5.26 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.82 Total: -0.01 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 1.17 Total: -52.98 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.02 -6.03 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158784560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds