Wall clock time and date at job start Mon Mar 30 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.88329 * 2 1 4 4 C 1.37971 * 120.22753 * 180.27299 * 3 2 1 5 5 C 1.39675 * 119.98470 * 359.71895 * 4 3 2 6 6 C 1.43208 * 120.11459 * 179.97438 * 5 4 3 7 7 N 4.80222 * 137.04905 * 0.29628 * 3 1 2 8 8 C 1.39512 * 119.76871 * 0.02562 * 5 4 3 9 9 C 1.38620 * 119.77122 * 359.97438 * 8 5 4 10 10 N 1.39975 * 119.99099 * 180.02562 * 9 8 5 11 11 C 1.34777 * 120.00266 * 335.14785 * 10 9 8 12 12 O 1.21591 * 119.99860 * 354.24588 * 11 10 9 13 13 N 1.34772 * 119.99770 * 174.51476 * 11 10 9 14 14 C 1.46506 * 119.99794 * 179.72592 * 13 11 10 15 15 H 1.08997 * 109.47056 * 325.00405 * 14 13 11 16 16 C 1.52998 * 109.47029 * 85.00593 * 14 13 11 17 17 C 1.50700 * 109.47183 * 205.00123 * 14 13 11 18 18 H 1.08007 * 119.99673 * 0.02562 * 17 14 13 19 19 C 1.37873 * 120.00283 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00247 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99577 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47145 * 90.00211 * 21 19 17 23 23 H 1.48507 * 109.47127 * 209.99940 * 21 19 17 24 24 H 1.48493 * 109.47550 * 329.99961 * 21 19 17 25 25 H 1.08997 * 109.47229 * 270.28132 * 1 2 3 26 26 H 1.09003 * 109.47121 * 30.27749 * 1 2 3 27 27 H 1.08993 * 109.47265 * 150.27454 * 1 2 3 28 28 H 1.07997 * 119.88827 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00766 * 179.70466 * 4 3 2 30 30 H 1.08000 * 120.11169 * 180.02562 * 8 5 4 31 31 H 0.97002 * 119.99708 * 155.15278 * 10 9 8 32 32 H 0.96999 * 120.00341 * 359.73324 * 13 11 10 33 33 H 1.09005 * 109.46754 * 299.99598 * 16 14 13 34 34 H 1.08997 * 109.47354 * 59.99995 * 16 14 13 35 35 H 1.08997 * 109.47289 * 180.02562 * 16 14 13 36 36 H 0.97002 * 120.00021 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5756 1.2071 -0.0057 5 6 4.2809 0.0015 -0.0055 6 6 5.7129 0.0069 -0.0120 7 7 6.8489 0.0111 -0.0169 8 6 3.5854 -1.2079 -0.0001 9 6 2.1992 -1.2047 0.0055 10 7 1.4968 -2.4154 0.0115 11 6 2.0726 -3.5311 -0.4786 12 8 3.1592 -3.4666 -1.0205 13 7 1.4416 -4.7173 -0.3728 14 6 2.0649 -5.9290 -0.9109 15 1 2.6171 -5.6817 -1.8175 16 6 3.0246 -6.5131 0.1276 17 6 0.9970 -6.9422 -1.2339 18 1 -0.0420 -6.7068 -1.0564 19 6 1.3464 -8.1696 -1.7558 20 7 0.4145 -9.0535 -2.0380 21 14 3.1436 -8.5768 -2.0619 22 1 3.7223 -9.2064 -0.8478 23 1 3.2500 -9.5177 -3.2059 24 1 3.8873 -7.3304 -2.3754 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6522 2.1319 -0.0004 29 1 4.1100 2.1455 -0.0105 30 1 4.1252 -2.1433 0.0004 31 1 0.5955 -2.4515 0.3683 32 1 0.5748 -4.7687 0.0594 33 1 3.7970 -5.7803 0.3612 34 1 2.4723 -6.7605 1.0342 35 1 3.4886 -7.4144 -0.2728 36 1 0.6604 -9.9172 -2.4049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158784560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:18 Heat of formation + Delta-G solvation = 8.856621 kcal Electronic energy + Delta-G solvation = -20063.253362 eV Core-core repulsion = 16932.934780 eV Total energy + Delta-G solvation = -3130.318582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84083 -40.05818 -37.81322 -36.99709 -35.75521 -34.42539 -33.62519 -32.03198 -30.21452 -28.37198 -27.21827 -24.68009 -23.35745 -22.74334 -21.62390 -20.33234 -19.83565 -18.28429 -17.59667 -16.95902 -16.60076 -16.44186 -16.16049 -15.68100 -15.21443 -15.09421 -14.88420 -14.66571 -14.38969 -14.15379 -14.11466 -13.94095 -13.65289 -13.30595 -13.09806 -12.80867 -12.77878 -12.44822 -12.37319 -12.15162 -11.64500 -11.51636 -11.27813 -11.01751 -10.87163 -9.99146 -9.70986 -8.96816 -8.38034 -6.43389 -0.21039 0.38943 1.27668 1.36574 1.45068 1.51592 1.70934 1.81754 2.19271 2.26107 2.85087 2.93272 2.99064 3.34033 3.92022 3.99154 4.17477 4.35499 4.44132 4.49404 4.54809 4.70106 4.79281 4.91052 4.95152 4.98957 5.14074 5.28815 5.32544 5.39354 5.43096 5.45305 5.53346 5.62056 5.96565 5.98848 6.27049 6.39844 6.59261 7.10234 7.22819 7.56221 8.76958 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004495 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.032727 B = 6228.232715 C = 7241.059498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.089 4.089 4 C -0.078 4.078 5 C -0.034 4.034 6 C 0.279 3.721 7 N -0.470 5.470 8 C -0.104 4.104 9 C 0.155 3.845 10 N -0.668 5.668 11 C 0.695 3.305 12 O -0.619 6.619 13 N -0.707 5.707 14 C 0.260 3.740 15 H 0.023 0.977 16 C -0.157 4.157 17 C -0.531 4.531 18 H 0.062 0.938 19 C 0.033 3.967 20 N -0.931 5.931 21 Si 0.934 3.066 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.264 1.264 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.178 0.822 29 H 0.159 0.841 30 H 0.122 0.878 31 H 0.425 0.575 32 H 0.408 0.592 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 21.880 7.468 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.083 4.083 3 C -0.107 4.107 4 C -0.099 4.099 5 C -0.038 4.038 6 C -0.035 4.035 7 N -0.146 5.146 8 C -0.128 4.128 9 C 0.059 3.941 10 N -0.317 5.317 11 C 0.395 3.605 12 O -0.500 6.500 13 N -0.360 5.360 14 C 0.155 3.845 15 H 0.041 0.959 16 C -0.215 4.215 17 C -0.569 4.569 18 H 0.080 0.920 19 C -0.167 4.167 20 N -0.570 5.570 21 Si 0.762 3.238 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.189 1.189 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.196 0.804 29 H 0.176 0.824 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.244 0.756 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.328 21.622 6.916 22.704 hybrid contribution -0.190 -1.256 -0.085 1.274 sum -0.518 20.366 6.831 21.487 Atomic orbital electron populations 1.20934 0.88179 1.04406 1.04249 1.20205 0.98084 0.90520 0.99504 1.21187 0.92770 0.98231 0.98497 1.21403 0.94913 0.96067 0.97540 1.15884 0.83209 0.95205 1.09531 1.26051 0.93045 0.92176 0.92207 1.81216 1.13371 1.09007 1.10990 1.21282 0.93906 0.97796 0.99777 1.17352 0.90173 0.85199 1.01404 1.42466 1.19555 1.05473 1.64201 1.16192 0.83990 0.81147 0.79162 1.90852 1.22866 1.85832 1.50450 1.45132 1.23624 1.05395 1.61805 1.18655 0.92023 0.81652 0.92214 0.95876 1.22375 0.99134 0.99209 1.00764 1.21224 0.93854 0.98713 1.43100 0.91991 1.25460 1.00821 0.95956 0.94431 1.69955 1.34730 1.07635 1.44706 0.86084 0.81518 0.78458 0.77757 1.18667 1.22075 1.18935 0.88558 0.88508 0.91870 0.80427 0.82371 0.86043 0.73568 0.75645 0.93777 0.91422 0.94191 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.44 71.24 0.67 -0.33 16 2 C -0.08 -1.15 5.90 -19.69 -0.12 -1.26 16 3 C -0.09 -0.94 9.67 22.21 0.21 -0.73 16 4 C -0.08 -1.12 9.75 22.55 0.22 -0.90 16 5 C -0.03 -0.79 5.73 -21.38 -0.12 -0.91 16 6 C 0.28 7.77 15.33 88.33 1.35 9.12 16 7 N -0.47 -15.16 18.54 19.01 0.35 -14.81 16 8 C -0.10 -2.90 8.42 22.67 0.19 -2.71 16 9 C 0.15 3.57 6.40 38.10 0.24 3.81 16 10 N -0.67 -16.22 4.97 -317.28 -1.58 -17.79 16 11 C 0.69 24.43 8.33 179.06 1.49 25.92 16 12 O -0.62 -27.00 13.17 -4.00 -0.05 -27.05 16 13 N -0.71 -25.86 5.07 -461.41 -2.34 -28.20 16 14 C 0.26 11.95 2.15 44.24 0.10 12.04 16 15 H 0.02 1.21 6.64 -2.39 -0.02 1.19 16 16 C -0.16 -6.69 8.96 71.98 0.65 -6.05 16 17 C -0.53 -27.93 9.31 25.60 0.24 -27.69 16 18 H 0.06 3.42 7.98 -2.91 -0.02 3.40 16 19 C 0.03 1.85 5.45 84.65 0.46 2.31 16 20 N -0.93 -54.69 13.96 21.44 0.30 -54.39 16 21 Si 0.93 44.34 24.37 68.60 1.67 46.01 16 22 H -0.26 -11.68 6.87 99.48 0.68 -11.00 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.26 -12.61 6.53 99.48 0.65 -11.96 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.10 0.44 8.09 -2.39 -0.02 0.43 16 27 H 0.06 0.64 6.97 -2.39 -0.02 0.63 16 28 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 29 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.12 4.33 5.79 -2.91 -0.02 4.31 16 31 H 0.42 7.03 7.41 -92.71 -0.69 6.34 16 32 H 0.41 12.43 8.56 -92.71 -0.79 11.64 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 35 H 0.04 1.76 3.27 -2.39 -0.01 1.76 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -72.62 308.99 3.52 -69.09 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -0.42 Total: 14.51 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.59 Total: 12.63 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.27 Total: -115.20 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.01 kcal Total: -72.62 3.52 -69.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158784560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.949 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds