Wall clock time and date at job start Mon Mar 30 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31358 * 119.64573 * 2 1 4 4 C 1.32756 * 121.79855 * 179.97438 * 3 2 1 5 5 C 1.48225 * 119.56087 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99808 * 186.59610 * 5 4 3 7 7 N 1.34775 * 120.00046 * 6.59813 * 5 4 3 8 8 C 1.46504 * 119.99853 * 5.71735 * 7 5 4 9 9 C 1.46498 * 119.99976 * 185.71844 * 7 5 4 10 10 H 1.08999 * 109.47054 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47006 * 239.99755 * 9 7 5 12 12 C 1.50704 * 109.47080 * 119.99964 * 9 7 5 13 13 H 1.07998 * 120.00141 * 359.97438 * 12 9 7 14 14 C 1.37876 * 119.99820 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00123 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99883 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47059 * 59.99989 * 16 14 12 18 18 H 1.48500 * 109.46906 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47198 * 300.00321 * 16 14 12 20 20 C 1.39371 * 120.87824 * 0.25245 * 4 3 2 21 21 C 1.38355 * 119.19774 * 359.49579 * 20 4 3 22 22 C 1.39860 * 119.64707 * 179.97438 * 2 1 3 23 23 C 1.43206 * 120.47145 * 0.02562 * 22 2 1 24 24 N 3.49194 * 80.31366 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47657 * 90.00242 * 1 2 3 26 26 H 1.09007 * 109.47377 * 209.99980 * 1 2 3 27 27 H 1.08999 * 109.47395 * 329.99473 * 1 2 3 28 28 H 1.09001 * 109.47084 * 275.51123 * 8 7 5 29 29 H 1.09002 * 109.46889 * 35.51064 * 8 7 5 30 30 H 1.08995 * 109.46733 * 155.51516 * 8 7 5 31 31 H 1.08999 * 109.46824 * 60.00487 * 11 9 7 32 32 H 1.08999 * 109.47254 * 299.99926 * 11 9 7 33 33 H 1.08997 * 109.46911 * 180.02562 * 11 9 7 34 34 H 0.96998 * 120.00018 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.39884 * 179.74800 * 20 4 3 36 36 H 1.08012 * 120.81862 * 180.22271 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1568 1.1416 0.0000 4 6 3.4834 1.1915 0.0005 5 6 4.1657 2.5074 -0.0001 6 8 5.3734 2.5654 -0.1205 7 7 3.4466 3.6394 0.1330 8 6 2.0086 3.5662 0.4034 9 6 4.1028 4.9431 0.0071 10 1 5.1646 4.7977 -0.1917 11 6 3.9311 5.7283 1.3091 12 6 3.4790 5.7119 -1.1291 13 1 2.6745 5.2731 -1.7006 14 6 3.9354 6.9755 -1.4390 15 7 4.9154 7.5097 -0.7434 16 14 3.1627 7.9282 -2.8478 17 1 1.7160 8.1256 -2.5772 18 1 3.8279 9.2498 -2.9753 19 1 3.3304 7.1663 -4.1114 20 6 4.2431 0.0231 -0.0042 21 6 3.5985 -1.2011 0.0012 22 6 2.1988 -1.2155 0.0005 23 6 1.4854 -2.4572 0.0005 24 7 0.9195 -3.4422 0.0015 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.4678 3.4476 -0.5356 29 1 1.8036 2.7136 1.0509 30 1 1.6844 4.4829 0.8960 31 1 4.3823 5.1722 2.1308 32 1 2.8693 5.8737 1.5083 33 1 4.4189 6.6984 1.2153 34 1 5.2367 8.3985 -0.9616 35 1 5.3219 0.0727 -0.0079 36 1 4.1614 -2.1230 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:15 Heat of formation + Delta-G solvation = 45.393250 kcal Electronic energy + Delta-G solvation = -20397.627367 eV Core-core repulsion = 17268.893133 eV Total energy + Delta-G solvation = -3128.734234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90060 -38.75991 -36.83404 -35.51506 -33.40790 -33.20584 -32.35944 -29.38363 -28.16642 -26.28920 -25.43677 -25.13015 -22.65028 -21.41641 -19.27214 -19.06232 -17.22225 -16.72503 -16.12879 -15.51629 -15.31565 -14.57108 -14.46219 -14.35637 -14.05262 -13.52440 -13.48886 -13.22080 -13.06374 -12.65400 -12.59929 -12.50532 -12.27499 -12.20349 -11.55746 -11.42249 -11.07271 -10.82566 -10.73405 -10.28747 -10.18446 -10.11842 -9.81143 -9.19122 -9.17100 -9.02345 -8.44664 -7.61983 -6.08775 -4.16947 0.10139 0.95010 2.32040 2.47246 3.24066 3.28254 3.33192 3.35192 3.43379 3.66160 3.90530 4.00124 4.28228 4.38406 4.73843 4.81333 5.03116 5.22617 5.23508 5.32294 5.34948 5.63956 5.73467 5.84301 6.07843 6.18298 6.37051 6.58664 6.77243 6.82868 7.02420 7.11438 7.35144 7.45241 7.59409 7.69452 7.98655 8.15003 8.44671 8.73972 8.92884 9.49408 10.96529 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.004434 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.509792 B = 6312.651590 C = 6708.407681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.173 3.827 3 N -0.445 5.445 4 C 0.132 3.868 5 C 0.547 3.453 6 O -0.543 6.543 7 N -0.563 5.563 8 C 0.097 3.903 9 C 0.255 3.745 10 H 0.065 0.935 11 C -0.147 4.147 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.126 4.126 21 C -0.028 4.028 22 C -0.080 4.080 23 C 0.264 3.736 24 N -0.413 5.413 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.013 0.987 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.264 0.736 35 H 0.160 0.840 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -13.464 3.191 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.031 3.969 3 N -0.157 5.157 4 C -0.007 4.007 5 C 0.331 3.669 6 O -0.421 6.421 7 N -0.291 5.291 8 C -0.047 4.047 9 C 0.156 3.844 10 H 0.082 0.918 11 C -0.206 4.206 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.147 4.147 21 C -0.056 4.056 22 C -0.086 4.086 23 C -0.052 4.052 24 N -0.089 5.089 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.177 0.823 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.948 -13.907 3.146 15.861 hybrid contribution 0.221 0.152 -0.831 0.873 sum -6.727 -13.755 2.315 15.486 Atomic orbital electron populations 1.20857 0.87815 1.04139 1.04060 1.21583 0.97329 0.86455 0.91584 1.68272 1.08893 1.26779 1.11775 1.21969 0.89215 0.95670 0.93838 1.17829 0.86562 0.82972 0.79565 1.90758 1.13104 1.86197 1.52053 1.48234 1.09355 1.06988 1.64563 1.21868 0.80755 1.01185 1.00881 1.19077 0.95118 0.76250 0.93981 0.91762 1.22097 0.99572 1.03074 0.95820 1.21271 1.19567 1.00484 1.15152 0.92133 1.24882 0.94897 0.97292 0.96630 1.69866 1.26472 1.16556 1.39726 0.86532 0.79317 0.78939 0.82468 1.20167 1.21182 1.20243 1.22091 1.02959 0.90814 0.98797 1.21625 0.91829 0.99178 0.92988 1.16971 0.93203 0.88081 1.10337 1.25338 0.93491 0.92543 0.93837 1.81269 1.08320 1.10665 1.08628 0.89353 0.90870 0.88982 0.92848 0.90977 0.91839 0.96837 0.94903 0.88666 0.92581 0.82283 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.77 36.01 0.35 -0.57 16 2 C 0.17 1.88 6.82 -82.19 -0.56 1.32 16 3 N -0.44 -6.08 6.06 -5.74 -0.03 -6.11 16 4 C 0.13 2.03 6.56 -82.94 -0.54 1.48 16 5 C 0.55 11.03 7.65 -12.16 -0.09 10.94 16 6 O -0.54 -12.55 15.67 5.35 0.08 -12.46 16 7 N -0.56 -11.90 2.75 -176.23 -0.49 -12.39 16 8 C 0.10 1.67 8.31 59.85 0.50 2.17 16 9 C 0.26 6.39 2.62 -69.08 -0.18 6.21 16 10 H 0.06 1.84 6.91 -51.93 -0.36 1.48 16 11 C -0.15 -3.45 8.96 37.16 0.33 -3.11 16 12 C -0.53 -13.98 8.37 -34.44 -0.29 -14.27 16 13 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.13 -1.52 9.61 -39.12 -0.38 -1.89 16 21 C -0.03 -0.26 9.89 -38.89 -0.38 -0.65 16 22 C -0.08 -0.79 5.75 -106.71 -0.61 -1.41 16 23 C 0.26 2.72 13.82 -22.47 -0.31 2.41 16 24 N -0.41 -4.98 18.54 41.84 0.78 -4.21 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.55 7.07 -51.93 -0.37 0.18 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.91 7.98 -51.93 -0.41 0.50 16 29 H 0.07 1.08 5.81 -51.93 -0.30 0.78 16 30 H 0.06 1.11 6.44 -51.93 -0.33 0.78 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.16 1.83 7.64 -52.49 -0.40 1.43 16 36 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -30.42 311.67 -5.69 -36.11 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.07 Total: -1.61 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.26 Total: 4.29 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.88 Total: -46.74 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.42 -5.69 -36.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.506 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds