Wall clock time and date at job start Mon Mar 30 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31358 * 119.64573 * 2 1 4 4 C 1.32756 * 121.79855 * 179.97438 * 3 2 1 5 5 C 1.48225 * 119.56087 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99808 * 186.59610 * 5 4 3 7 7 N 1.34775 * 120.00046 * 6.59813 * 5 4 3 8 8 C 1.46504 * 119.99853 * 5.71735 * 7 5 4 9 9 C 1.46498 * 119.99976 * 185.71844 * 7 5 4 10 10 H 1.08999 * 109.47054 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47006 * 239.99755 * 9 7 5 12 12 C 1.50704 * 109.47080 * 119.99964 * 9 7 5 13 13 H 1.07998 * 120.00141 * 359.97438 * 12 9 7 14 14 C 1.37876 * 119.99820 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00123 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99883 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47059 * 59.99989 * 16 14 12 18 18 H 1.48500 * 109.46906 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47198 * 300.00321 * 16 14 12 20 20 C 1.39371 * 120.87824 * 0.25245 * 4 3 2 21 21 C 1.38355 * 119.19774 * 359.49579 * 20 4 3 22 22 C 1.39860 * 119.64707 * 179.97438 * 2 1 3 23 23 C 1.43206 * 120.47145 * 0.02562 * 22 2 1 24 24 N 3.49194 * 80.31366 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47657 * 90.00242 * 1 2 3 26 26 H 1.09007 * 109.47377 * 209.99980 * 1 2 3 27 27 H 1.08999 * 109.47395 * 329.99473 * 1 2 3 28 28 H 1.09001 * 109.47084 * 275.51123 * 8 7 5 29 29 H 1.09002 * 109.46889 * 35.51064 * 8 7 5 30 30 H 1.08995 * 109.46733 * 155.51516 * 8 7 5 31 31 H 1.08999 * 109.46824 * 60.00487 * 11 9 7 32 32 H 1.08999 * 109.47254 * 299.99926 * 11 9 7 33 33 H 1.08997 * 109.46911 * 180.02562 * 11 9 7 34 34 H 0.96998 * 120.00018 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.39884 * 179.74800 * 20 4 3 36 36 H 1.08012 * 120.81862 * 180.22271 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1568 1.1416 0.0000 4 6 3.4834 1.1915 0.0005 5 6 4.1657 2.5074 -0.0001 6 8 5.3734 2.5654 -0.1205 7 7 3.4466 3.6394 0.1330 8 6 2.0086 3.5662 0.4034 9 6 4.1028 4.9431 0.0071 10 1 5.1646 4.7977 -0.1917 11 6 3.9311 5.7283 1.3091 12 6 3.4790 5.7119 -1.1291 13 1 2.6745 5.2731 -1.7006 14 6 3.9354 6.9755 -1.4390 15 7 4.9154 7.5097 -0.7434 16 14 3.1627 7.9282 -2.8478 17 1 1.7160 8.1256 -2.5772 18 1 3.8279 9.2498 -2.9753 19 1 3.3304 7.1663 -4.1114 20 6 4.2431 0.0231 -0.0042 21 6 3.5985 -1.2011 0.0012 22 6 2.1988 -1.2155 0.0005 23 6 1.4854 -2.4572 0.0005 24 7 0.9195 -3.4422 0.0015 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.4678 3.4476 -0.5356 29 1 1.8036 2.7136 1.0509 30 1 1.6844 4.4829 0.8960 31 1 4.3823 5.1722 2.1308 32 1 2.8693 5.8737 1.5083 33 1 4.4189 6.6984 1.2153 34 1 5.2367 8.3985 -0.9616 35 1 5.3219 0.0727 -0.0079 36 1 4.1614 -2.1230 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:15 Heat of formation + Delta-G solvation = 27.308599 kcal Electronic energy + Delta-G solvation = -20398.411576 eV Core-core repulsion = 17268.893133 eV Total energy + Delta-G solvation = -3129.518444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96957 -40.22373 -37.76670 -37.24487 -34.94000 -34.19350 -33.68302 -31.20637 -28.97906 -27.70780 -27.28873 -26.56659 -23.64907 -22.89917 -20.66357 -20.15289 -18.61656 -18.32763 -17.61705 -17.08612 -16.57803 -16.29603 -15.60399 -15.35268 -15.26976 -14.63224 -14.43389 -14.35596 -14.33602 -14.08009 -13.93424 -13.47157 -13.36004 -13.31634 -13.10688 -12.92831 -12.78151 -12.66474 -12.56068 -12.15792 -12.10977 -11.27839 -11.14078 -10.99985 -10.51405 -10.27511 -10.13621 -9.31779 -8.12687 -6.29187 -0.88606 0.09550 1.38974 1.45072 1.46342 1.48212 1.54128 2.10813 2.19392 2.45198 2.61334 2.77214 2.98651 3.15376 3.46454 3.65082 3.88649 4.03213 4.48632 4.58075 4.59642 4.73190 4.75143 4.81746 4.89469 4.92984 4.97583 5.08997 5.12834 5.24315 5.41470 5.47169 5.63449 5.68840 6.02643 6.16785 6.27833 6.57070 6.76361 6.79368 7.22591 7.43915 8.91532 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.004434 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.509792 B = 6312.651590 C = 6708.407681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.174 3.826 3 N -0.460 5.460 4 C 0.108 3.892 5 C 0.539 3.461 6 O -0.585 6.585 7 N -0.576 5.576 8 C 0.103 3.897 9 C 0.260 3.740 10 H 0.016 0.984 11 C -0.133 4.133 12 C -0.539 4.539 13 H 0.059 0.941 14 C 0.018 3.982 15 N -0.916 5.916 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.277 1.277 20 C -0.122 4.122 21 C -0.004 4.004 22 C -0.066 4.066 23 C 0.286 3.714 24 N -0.436 5.436 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.265 0.735 35 H 0.161 0.839 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -15.366 2.937 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.031 3.969 3 N -0.172 5.172 4 C -0.029 4.029 5 C 0.326 3.674 6 O -0.467 6.467 7 N -0.304 5.304 8 C -0.039 4.039 9 C 0.158 3.842 10 H 0.033 0.967 11 C -0.192 4.192 12 C -0.578 4.578 13 H 0.077 0.923 14 C -0.182 4.182 15 N -0.555 5.555 16 Si 0.789 3.211 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.203 1.203 20 C -0.143 4.143 21 C -0.032 4.032 22 C -0.072 4.072 23 C -0.029 4.029 24 N -0.111 5.111 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.178 0.822 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.881 -15.826 2.904 18.379 hybrid contribution 0.800 0.604 -0.742 1.248 sum -8.081 -15.222 2.161 17.369 Atomic orbital electron populations 1.20958 0.85842 1.05012 1.04982 1.21946 0.98432 0.85882 0.90628 1.68073 1.08106 1.28389 1.12650 1.21259 0.90213 0.93752 0.97681 1.18541 0.86304 0.84483 0.78061 1.90713 1.15094 1.87243 1.53650 1.48209 1.10799 1.06095 1.65258 1.21981 0.78431 1.02040 1.01427 1.18673 0.92772 0.78370 0.94389 0.96652 1.21890 1.00222 1.01614 0.95456 1.21513 1.19574 1.00924 1.15763 0.92255 1.25698 0.95290 0.98238 0.98971 1.70005 1.27563 1.16831 1.41104 0.85521 0.79016 0.77415 0.79142 1.18794 1.20847 1.20276 1.22119 1.02994 0.90739 0.98458 1.21955 0.91597 0.99375 0.90249 1.16986 0.93473 0.87633 1.09110 1.25089 0.92786 0.91992 0.93060 1.81323 1.09061 1.11445 1.09316 0.88300 0.89756 0.88380 0.92670 0.88434 0.92294 0.95941 0.93418 0.91097 0.92552 0.82172 0.79314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.77 71.24 0.70 -0.79 16 2 C 0.17 3.30 6.82 43.02 0.29 3.59 16 3 N -0.46 -11.78 6.06 -172.08 -1.04 -12.82 16 4 C 0.11 3.25 6.56 41.93 0.28 3.52 16 5 C 0.54 22.40 7.65 86.90 0.66 23.06 16 6 O -0.59 -28.48 15.67 -3.75 -0.06 -28.54 16 7 N -0.58 -24.92 2.75 -829.77 -2.28 -27.21 16 8 C 0.10 3.53 8.31 127.77 1.06 4.59 16 9 C 0.26 13.50 2.62 44.25 0.12 13.62 16 10 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 11 C -0.13 -6.42 8.96 71.98 0.64 -5.78 16 12 C -0.54 -29.29 8.37 25.60 0.21 -29.08 16 13 H 0.06 3.16 7.65 -2.91 -0.02 3.13 16 14 C 0.02 0.97 5.30 84.65 0.45 1.42 16 15 N -0.92 -52.28 11.32 21.45 0.24 -52.04 16 16 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.12 -2.74 9.61 22.57 0.22 -2.52 16 21 C 0.00 -0.06 9.89 22.72 0.22 0.16 16 22 C -0.07 -1.08 5.75 -21.22 -0.12 -1.20 16 23 C 0.29 4.86 13.82 88.33 1.22 6.08 16 24 N -0.44 -9.14 18.54 19.01 0.35 -8.79 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 0.96 7.07 -2.38 -0.02 0.95 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.84 7.98 -2.39 -0.02 1.83 16 29 H 0.10 2.81 5.81 -2.39 -0.01 2.80 16 30 H 0.06 2.03 6.44 -2.39 -0.02 2.01 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 2.09 6.67 -2.39 -0.02 2.08 16 33 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 34 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 35 H 0.16 3.55 7.64 -2.91 -0.02 3.53 16 36 H 0.19 1.35 8.06 -2.90 -0.02 1.33 16 Total: -1.00 -68.48 311.67 6.30 -62.18 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.11 Total: 5.78 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.96 Total: 16.69 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -2.73 Total: -100.85 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.06 Total: -28.54 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -68.48 6.30 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.486 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds