Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39554 * 120.11282 * 2 1 4 4 C 1.43197 * 120.11476 * 359.97438 * 3 2 1 5 5 N 3.48405 * 80.50195 * 359.97438 * 2 1 3 6 6 C 1.39635 * 119.76270 * 180.02562 * 3 2 1 7 7 C 1.38008 * 119.98924 * 359.97438 * 6 3 2 8 8 C 1.38217 * 120.22888 * 359.72308 * 7 6 3 9 9 C 1.38577 * 120.11316 * 180.02562 * 2 1 3 10 10 N 1.39970 * 119.99422 * 359.97438 * 9 2 1 11 11 C 1.34782 * 119.99930 * 145.50846 * 10 9 2 12 12 O 1.21587 * 119.99889 * 4.48795 * 11 10 9 13 13 N 1.34777 * 120.00061 * 184.48862 * 11 10 9 14 14 C 1.46497 * 119.99866 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99880 * 180.02562 * 13 11 10 16 16 C 1.50703 * 109.47073 * 89.99865 * 15 13 11 17 17 H 1.08004 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99933 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99824 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47016 * 59.99884 * 20 18 16 22 22 H 1.48499 * 109.46875 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46762 * 299.99895 * 20 18 16 24 24 H 1.09002 * 109.47148 * 269.98072 * 1 2 3 25 25 H 1.09002 * 109.46555 * 29.98387 * 1 2 3 26 26 H 1.09003 * 109.46988 * 149.97873 * 1 2 3 27 27 H 1.08002 * 119.99858 * 180.02562 * 6 3 2 28 28 H 1.08005 * 119.88435 * 180.02562 * 7 6 3 29 29 H 1.08000 * 119.88124 * 180.27186 * 8 7 6 30 30 H 0.97002 * 120.00454 * 325.78388 * 10 9 2 31 31 H 1.09007 * 109.46988 * 90.00499 * 14 13 11 32 32 H 1.08999 * 109.47408 * 210.00106 * 14 13 11 33 33 H 1.09003 * 109.47411 * 330.00683 * 14 13 11 34 34 H 1.08993 * 109.47019 * 209.99767 * 15 13 11 35 35 H 1.09003 * 109.46972 * 330.00085 * 15 13 11 36 36 H 0.97002 * 119.99751 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2072 0.0000 4 6 1.4961 2.4502 -0.0006 5 7 0.9321 3.4363 -0.0015 6 6 3.6035 1.1987 -0.0005 7 6 4.2860 -0.0008 -0.0005 8 6 3.5922 -1.1962 0.0058 9 6 2.2023 -1.1987 -0.0005 10 7 1.5047 -2.4122 -0.0005 11 6 2.0027 -3.4758 -0.6620 12 8 3.0958 -3.4061 -1.1898 13 7 1.2889 -4.6165 -0.7383 14 6 -0.0278 -4.7006 -0.1018 15 6 1.8305 -5.7727 -1.4567 16 6 2.6239 -6.6295 -0.5041 17 1 2.7159 -6.3414 0.5327 18 6 3.2323 -7.7813 -0.9562 19 7 3.1198 -8.1324 -2.2186 20 14 4.2152 -8.8437 0.2248 21 1 3.3311 -9.3120 1.3222 22 1 4.7631 -10.0163 -0.5033 23 1 5.3320 -8.0477 0.7942 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 4.1492 2.1307 -0.0001 28 1 5.3660 -0.0055 -0.0005 29 1 4.1320 -2.1316 0.0102 30 1 0.6609 -2.4867 0.4721 31 1 -0.7947 -4.3881 -0.8107 32 1 -0.2167 -5.7284 0.2080 33 1 -0.0521 -4.0478 0.7708 34 1 1.0109 -6.3572 -1.8746 35 1 2.4792 -5.4286 -2.2623 36 1 3.5475 -8.9428 -2.5366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178575102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = 35.248401 kcal Electronic energy + Delta-G solvation = -20153.850903 eV Core-core repulsion = 17024.676755 eV Total energy + Delta-G solvation = -3129.174148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60436 -38.92489 -36.59189 -35.08275 -34.61923 -32.78042 -32.56023 -30.05399 -27.87033 -27.12741 -25.86696 -24.03841 -22.96263 -21.39443 -20.01823 -18.60309 -17.68955 -16.60811 -16.08884 -15.82619 -15.67085 -14.97972 -14.72361 -14.41573 -14.05461 -13.61946 -13.35249 -13.20589 -13.13098 -12.94912 -12.73819 -12.64980 -12.23991 -12.07597 -11.90953 -11.62466 -11.38228 -11.24318 -10.97014 -10.61591 -10.25300 -10.16024 -9.72928 -9.37905 -8.80850 -8.47800 -8.14512 -7.69747 -6.08818 -4.14116 0.74365 1.22825 2.51258 2.87236 3.06262 3.29009 3.33951 3.36716 3.62196 3.79739 3.93878 4.31671 4.45573 4.60384 4.77160 5.01409 5.25064 5.28934 5.35872 5.37687 5.46280 5.50744 5.63084 5.76223 5.90291 6.04098 6.13711 6.27126 6.36818 6.54159 6.69525 7.03256 7.26624 7.35242 7.40833 7.56237 7.88009 8.16831 8.45258 8.85775 9.10962 9.51357 10.99040 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.004063 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.357746 B = 6890.099006 C = 7420.198555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.023 4.023 4 C 0.267 3.733 5 N -0.430 5.430 6 C -0.091 4.091 7 C -0.107 4.107 8 C -0.086 4.086 9 C 0.180 3.820 10 N -0.694 5.694 11 C 0.698 3.302 12 O -0.566 6.566 13 N -0.610 5.610 14 C 0.082 3.918 15 C 0.260 3.740 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.403 0.597 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 13.547 6.037 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.027 4.027 4 C -0.048 4.048 5 N -0.106 5.106 6 C -0.113 4.113 7 C -0.125 4.125 8 C -0.107 4.107 9 C 0.083 3.917 10 N -0.344 5.344 11 C 0.400 3.600 12 O -0.442 6.442 13 N -0.345 5.345 14 C -0.062 4.062 15 C 0.140 3.860 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.241 0.759 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.416 14.812 5.457 16.391 hybrid contribution 0.289 -1.153 0.857 1.466 sum -4.126 13.659 6.314 15.603 Atomic orbital electron populations 1.20812 0.90596 1.03537 1.02780 1.19555 0.95970 0.90441 1.02181 1.15538 0.92156 0.85694 1.09314 1.25649 0.93086 0.92744 0.93343 1.81235 1.08696 1.11154 1.09482 1.21052 0.91572 0.98991 0.99640 1.21000 1.00454 0.91125 0.99946 1.21790 0.92781 1.00261 0.95864 1.17160 0.91194 0.83988 0.99385 1.42989 1.26487 1.09404 1.55541 1.15912 0.84452 0.80020 0.79663 1.90887 1.19741 1.82193 1.51424 1.47520 1.17861 1.12839 1.56264 1.21619 0.85086 1.03386 0.96112 1.19275 0.94407 0.80165 0.92107 1.21405 1.32409 1.07021 0.96047 0.92475 1.24926 0.96250 0.97564 0.95267 1.69918 1.44247 1.24993 1.14138 0.86551 0.80429 0.79634 0.80751 1.20282 1.21172 1.20141 0.90539 0.91325 0.90672 0.85257 0.84708 0.82798 0.75929 0.93504 0.90119 0.93168 0.94694 0.93567 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.07 36.01 0.33 -0.79 16 2 C -0.08 -0.86 5.93 -104.00 -0.62 -1.48 16 3 C -0.02 -0.25 5.73 -106.96 -0.61 -0.87 16 4 C 0.27 3.12 13.80 -22.47 -0.31 2.81 16 5 N -0.43 -5.77 18.54 41.84 0.78 -5.00 16 6 C -0.09 -0.90 9.75 -39.14 -0.38 -1.28 16 7 C -0.11 -1.16 10.02 -39.67 -0.40 -1.56 16 8 C -0.09 -1.21 8.69 -39.31 -0.34 -1.55 16 9 C 0.18 2.44 6.28 -83.74 -0.53 1.92 16 10 N -0.69 -9.97 4.64 -14.26 -0.07 -10.04 16 11 C 0.70 13.62 8.12 -86.91 -0.71 12.91 16 12 O -0.57 -13.26 13.33 5.29 0.07 -13.19 16 13 N -0.61 -12.07 2.86 -188.74 -0.54 -12.61 16 14 C 0.08 1.16 10.24 59.85 0.61 1.77 16 15 C 0.26 6.46 5.16 -5.19 -0.03 6.44 16 16 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 17 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.65 7.09 -51.93 -0.37 0.28 16 26 H 0.07 0.67 7.16 -51.93 -0.37 0.29 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.15 2.59 6.19 -52.49 -0.32 2.26 16 30 H 0.40 4.51 5.52 -40.82 -0.23 4.29 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.05 0.55 6.31 -51.93 -0.33 0.22 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -32.22 315.49 -6.77 -38.99 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.08 Total: 0.79 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -3.40 Total: 5.23 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.91 Total: -52.72 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.22 -6.77 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178575102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.233 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds