Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39554 * 120.11282 * 2 1 4 4 C 1.43197 * 120.11476 * 359.97438 * 3 2 1 5 5 N 3.48405 * 80.50195 * 359.97438 * 2 1 3 6 6 C 1.39635 * 119.76270 * 180.02562 * 3 2 1 7 7 C 1.38008 * 119.98924 * 359.97438 * 6 3 2 8 8 C 1.38217 * 120.22888 * 359.72308 * 7 6 3 9 9 C 1.38577 * 120.11316 * 180.02562 * 2 1 3 10 10 N 1.39970 * 119.99422 * 359.97438 * 9 2 1 11 11 C 1.34782 * 119.99930 * 145.50846 * 10 9 2 12 12 O 1.21587 * 119.99889 * 4.48795 * 11 10 9 13 13 N 1.34777 * 120.00061 * 184.48862 * 11 10 9 14 14 C 1.46497 * 119.99866 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99880 * 180.02562 * 13 11 10 16 16 C 1.50703 * 109.47073 * 89.99865 * 15 13 11 17 17 H 1.08004 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99933 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99824 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47016 * 59.99884 * 20 18 16 22 22 H 1.48499 * 109.46875 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46762 * 299.99895 * 20 18 16 24 24 H 1.09002 * 109.47148 * 269.98072 * 1 2 3 25 25 H 1.09002 * 109.46555 * 29.98387 * 1 2 3 26 26 H 1.09003 * 109.46988 * 149.97873 * 1 2 3 27 27 H 1.08002 * 119.99858 * 180.02562 * 6 3 2 28 28 H 1.08005 * 119.88435 * 180.02562 * 7 6 3 29 29 H 1.08000 * 119.88124 * 180.27186 * 8 7 6 30 30 H 0.97002 * 120.00454 * 325.78388 * 10 9 2 31 31 H 1.09007 * 109.46988 * 90.00499 * 14 13 11 32 32 H 1.08999 * 109.47408 * 210.00106 * 14 13 11 33 33 H 1.09003 * 109.47411 * 330.00683 * 14 13 11 34 34 H 1.08993 * 109.47019 * 209.99767 * 15 13 11 35 35 H 1.09003 * 109.46972 * 330.00085 * 15 13 11 36 36 H 0.97002 * 119.99751 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2072 0.0000 4 6 1.4961 2.4502 -0.0006 5 7 0.9321 3.4363 -0.0015 6 6 3.6035 1.1987 -0.0005 7 6 4.2860 -0.0008 -0.0005 8 6 3.5922 -1.1962 0.0058 9 6 2.2023 -1.1987 -0.0005 10 7 1.5047 -2.4122 -0.0005 11 6 2.0027 -3.4758 -0.6620 12 8 3.0958 -3.4061 -1.1898 13 7 1.2889 -4.6165 -0.7383 14 6 -0.0278 -4.7006 -0.1018 15 6 1.8305 -5.7727 -1.4567 16 6 2.6239 -6.6295 -0.5041 17 1 2.7159 -6.3414 0.5327 18 6 3.2323 -7.7813 -0.9562 19 7 3.1198 -8.1324 -2.2186 20 14 4.2152 -8.8437 0.2248 21 1 3.3311 -9.3120 1.3222 22 1 4.7631 -10.0163 -0.5033 23 1 5.3320 -8.0477 0.7942 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 4.1492 2.1307 -0.0001 28 1 5.3660 -0.0055 -0.0005 29 1 4.1320 -2.1316 0.0102 30 1 0.6609 -2.4867 0.4721 31 1 -0.7947 -4.3881 -0.8107 32 1 -0.2167 -5.7284 0.2080 33 1 -0.0521 -4.0478 0.7708 34 1 1.0109 -6.3572 -1.8746 35 1 2.4792 -5.4286 -2.2623 36 1 3.5475 -8.9428 -2.5366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178575102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = 15.735834 kcal Electronic energy + Delta-G solvation = -20154.697031 eV Core-core repulsion = 17024.676755 eV Total energy + Delta-G solvation = -3130.020277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82062 -40.13338 -37.63755 -36.64314 -35.88788 -34.61040 -33.64386 -31.20229 -29.55784 -28.04168 -27.30514 -25.38146 -24.47347 -22.41865 -21.36839 -19.69410 -19.08316 -18.63906 -17.37886 -16.91355 -16.71499 -16.54310 -16.26915 -15.52269 -15.41681 -14.79137 -14.53923 -14.46148 -14.12956 -14.05768 -13.86426 -13.79249 -13.53561 -13.38639 -13.13531 -12.95882 -12.78613 -12.58033 -12.46976 -12.27135 -12.14015 -11.72234 -11.37528 -10.92502 -10.60216 -9.75842 -9.53762 -9.01168 -8.18245 -6.33076 -0.20244 0.29577 1.40502 1.44056 1.50639 1.53833 1.76319 1.91813 2.25415 2.42907 2.82329 2.91166 3.08562 3.12863 3.75946 3.93409 4.14476 4.29422 4.38442 4.50347 4.64809 4.68482 4.70490 4.74375 4.86918 5.00323 5.15176 5.23498 5.25328 5.33082 5.43242 5.53002 5.58552 5.80505 5.96503 6.07924 6.09489 6.42993 6.75775 7.05493 7.33990 7.63881 8.87912 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.004063 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.357746 B = 6890.099006 C = 7420.198555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.027 4.027 4 C 0.287 3.713 5 N -0.457 5.457 6 C -0.072 4.072 7 C -0.103 4.103 8 C -0.106 4.106 9 C 0.154 3.846 10 N -0.673 5.673 11 C 0.694 3.306 12 O -0.615 6.615 13 N -0.619 5.619 14 C 0.076 3.924 15 C 0.276 3.724 16 C -0.543 4.543 17 H 0.054 0.946 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.277 1.277 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.119 0.881 30 H 0.419 0.581 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.002 0.998 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 14.915 7.708 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.068 4.068 3 C -0.031 4.031 4 C -0.027 4.027 5 N -0.133 5.133 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.128 4.128 9 C 0.058 3.942 10 N -0.325 5.325 11 C 0.396 3.604 12 O -0.495 6.495 13 N -0.354 5.354 14 C -0.066 4.066 15 C 0.154 3.846 16 C -0.581 4.581 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.203 1.203 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.179 0.821 28 H 0.175 0.825 29 H 0.137 0.863 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.115 16.229 7.175 18.467 hybrid contribution 0.488 -1.464 0.329 1.578 sum -4.628 14.764 7.504 17.196 Atomic orbital electron populations 1.20902 0.88881 1.03786 1.04270 1.19669 0.97142 0.89537 1.00476 1.15609 0.92644 0.85214 1.09604 1.25539 0.92377 0.92334 0.92452 1.81273 1.09508 1.12011 1.10508 1.21369 0.91235 0.99729 0.97006 1.21186 1.01568 0.90266 0.99137 1.21684 0.93351 1.00154 0.97585 1.17267 0.91174 0.84131 1.01637 1.42563 1.26874 1.08404 1.54619 1.16060 0.83866 0.80807 0.79653 1.90855 1.21951 1.83227 1.53462 1.47358 1.19794 1.11737 1.56475 1.21918 0.82713 1.04131 0.97840 1.18700 0.93314 0.81407 0.91136 1.21703 1.32758 1.07498 0.96180 0.92765 1.25813 0.97257 0.98992 0.96914 1.70039 1.45254 1.25583 1.15922 0.85501 0.78872 0.77757 0.78875 1.18596 1.20592 1.20275 0.88339 0.91298 0.90190 0.82135 0.82534 0.86274 0.73984 0.90884 0.90810 0.89505 0.95355 0.98035 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.07 71.24 0.65 -1.26 16 2 C -0.06 -1.29 5.93 -19.46 -0.12 -1.41 16 3 C -0.03 -0.51 5.73 -21.38 -0.12 -0.64 16 4 C 0.29 5.97 13.80 88.33 1.22 7.19 16 5 N -0.46 -11.25 18.54 19.00 0.35 -10.90 16 6 C -0.07 -1.22 9.75 22.55 0.22 -1.00 16 7 C -0.10 -2.09 10.02 22.21 0.22 -1.87 16 8 C -0.11 -3.01 8.69 22.45 0.20 -2.82 16 9 C 0.15 4.05 6.28 38.10 0.24 4.29 16 10 N -0.67 -18.83 4.64 -317.27 -1.47 -20.30 16 11 C 0.69 27.66 8.12 179.05 1.45 29.12 16 12 O -0.62 -30.33 13.33 -3.99 -0.05 -30.38 16 13 N -0.62 -24.81 2.86 -869.30 -2.48 -27.30 16 14 C 0.08 2.03 10.24 127.77 1.31 3.34 16 15 C 0.28 14.31 5.16 85.63 0.44 14.76 16 16 C -0.54 -30.23 9.39 25.60 0.24 -29.99 16 17 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 18 C 0.01 0.52 5.46 84.66 0.46 0.99 16 19 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 20 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.11 7.09 -2.39 -0.02 1.09 16 26 H 0.08 1.19 7.16 -2.39 -0.02 1.18 16 27 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 29 H 0.12 4.26 6.19 -2.91 -0.02 4.25 16 30 H 0.42 8.48 5.52 -92.71 -0.51 7.96 16 31 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 33 H 0.09 1.65 6.31 -2.39 -0.02 1.63 16 34 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 36 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.04 315.49 5.67 -67.37 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.61 Total: 9.70 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.41 Total: 20.70 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.32 Total: -113.15 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.04 5.67 -67.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178575102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.107 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds