Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41063 * 120.89647 * 2 1 4 4 C 1.40067 * 121.95182 * 0.49988 * 3 2 1 5 5 C 1.36322 * 119.50679 * 179.69585 * 4 3 2 6 6 C 1.39458 * 121.55944 * 359.80702 * 5 4 3 7 7 F 1.35095 * 119.17932 * 179.97438 * 6 5 4 8 8 C 1.36286 * 121.64211 * 0.02562 * 6 5 4 9 9 C 1.40800 * 119.47608 * 359.97438 * 8 6 5 10 10 N 1.33048 * 121.74069 * 180.02562 * 9 8 6 11 11 C 1.33028 * 120.94275 * 179.97438 * 10 9 8 12 12 C 1.41244 * 119.02052 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00208 * 168.16832 * 12 11 10 14 14 C 1.40157 * 120.00231 * 348.16860 * 12 11 10 15 15 N 1.30664 * 120.00267 * 166.26309 * 14 12 11 16 16 Si 1.86802 * 119.99844 * 346.26852 * 14 12 11 17 17 H 1.48497 * 109.47210 * 85.53472 * 16 14 12 18 18 H 1.48502 * 109.47211 * 205.53483 * 16 14 12 19 19 H 1.48504 * 109.47127 * 325.53287 * 16 14 12 20 20 C 1.35988 * 120.89934 * 180.29188 * 2 1 3 21 21 C 1.50699 * 119.79985 * 359.97302 * 20 2 1 22 22 C 1.53000 * 109.47306 * 123.63231 * 21 20 2 23 23 C 1.53005 * 109.47240 * 243.63383 * 21 20 2 24 24 H 1.09000 * 109.46822 * 263.35895 * 1 2 3 25 25 H 1.09000 * 109.47537 * 143.36099 * 1 2 3 26 26 H 1.09007 * 109.47580 * 23.35435 * 1 2 3 27 27 H 1.08007 * 120.24340 * 359.47965 * 4 3 2 28 28 H 1.08005 * 119.22176 * 179.78404 * 5 4 3 29 29 H 1.08003 * 120.26148 * 180.02562 * 8 6 5 30 30 H 0.96994 * 120.00080 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.46930 * 3.63389 * 21 20 2 32 32 H 1.09000 * 109.46834 * 63.87210 * 22 21 20 33 33 H 1.09007 * 109.46707 * 183.87173 * 22 21 20 34 34 H 1.08995 * 109.46977 * 303.86977 * 22 21 20 35 35 H 1.09003 * 109.46675 * 71.12038 * 23 21 20 36 36 H 1.08999 * 109.47212 * 191.12430 * 23 21 20 37 37 H 1.08994 * 109.47069 * 311.12537 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2313 1.2105 0.0000 4 6 1.5922 2.4568 0.0104 5 6 2.3415 3.5956 0.0162 6 6 3.7354 3.5522 0.0160 7 9 4.4304 4.7106 0.0214 8 6 4.4139 2.3702 0.0096 9 6 3.6958 1.1591 0.0034 10 7 4.3120 -0.0200 -0.0025 11 6 3.6177 -1.1547 -0.0078 12 6 4.3136 -2.3838 -0.0145 13 1 3.7831 -3.3057 0.1730 14 6 5.6925 -2.4071 -0.2645 15 7 6.3843 -3.4861 -0.0108 16 14 6.5412 -0.8955 -0.9602 17 1 6.9135 0.0181 0.1497 18 1 7.7650 -1.3083 -1.6932 19 1 5.6199 -0.1946 -1.8904 20 6 2.2053 -1.1669 -0.0059 21 6 1.4678 -2.4810 -0.0120 22 6 1.9144 -3.3110 -1.2173 23 6 1.7774 -3.2456 1.2766 24 1 -0.3633 -0.1189 1.0208 25 1 -0.3634 -0.8246 -0.6133 26 1 -0.3634 0.9435 -0.4074 27 1 0.5137 2.5150 0.0102 28 1 1.8438 4.5541 0.0206 29 1 5.4939 2.3626 0.0100 30 1 7.3386 -3.5021 -0.1834 31 1 0.3955 -2.2956 -0.0758 32 1 2.9722 -3.5547 -1.1186 33 1 1.3319 -4.2314 -1.2605 34 1 1.7571 -2.7382 -2.1312 35 1 1.2877 -2.7540 2.1173 36 1 1.4102 -4.2682 1.1895 37 1 2.8548 -3.2592 1.4411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181316815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -16.891920 kcal Electronic energy + Delta-G solvation = -21185.736322 eV Core-core repulsion = 18034.381238 eV Total energy + Delta-G solvation = -3151.355084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.34687 -39.78973 -36.98806 -34.76757 -33.78789 -32.86925 -30.11651 -28.63221 -26.93832 -26.55405 -26.42339 -22.80779 -22.03622 -20.63810 -20.00264 -17.95938 -17.44405 -16.10020 -15.75019 -15.43122 -15.03171 -14.73559 -13.91473 -13.73662 -13.51830 -13.44399 -13.27502 -12.72256 -12.52923 -12.40269 -12.35938 -12.04879 -11.74699 -11.58009 -11.36558 -11.17006 -11.02452 -10.82073 -10.63477 -10.39619 -10.11047 -9.92794 -9.51977 -9.37874 -9.10569 -7.84868 -7.72459 -7.35889 -7.17163 -4.94996 1.27401 1.79043 2.94321 3.26031 3.37371 3.49309 3.72568 4.28377 4.50275 4.85936 5.14410 5.29386 5.39058 5.49164 5.55400 5.60355 5.64151 5.82161 5.83631 5.94429 6.04462 6.09317 6.17428 6.24760 6.26781 6.40074 6.49865 6.56588 6.61265 6.68842 6.75720 6.83714 6.89335 6.94210 7.06377 7.13407 7.33831 7.44041 7.60969 7.83542 8.24499 8.27942 9.42885 9.66197 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.009274 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.320969 B = 3018.619043 C = 4599.857438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.034 4.034 3 C -0.200 4.200 4 C -0.031 4.031 5 C -0.241 4.241 6 C 0.131 3.869 7 F -0.155 7.155 8 C -0.198 4.198 9 C 0.232 3.768 10 N -0.596 5.596 11 C 0.254 3.746 12 C -0.383 4.383 13 H 0.128 0.872 14 C 0.081 3.919 15 N -0.773 5.773 16 Si 0.997 3.003 17 H -0.271 1.271 18 H -0.330 1.330 19 H -0.265 1.265 20 C -0.148 4.148 21 C -0.040 4.040 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.295 0.705 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 2.743 -0.417 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.050 4.050 5 C -0.261 4.261 6 C 0.110 3.890 7 F -0.134 7.134 8 C -0.219 4.219 9 C 0.100 3.900 10 N -0.318 5.318 11 C 0.127 3.873 12 C -0.413 4.413 13 H 0.145 0.855 14 C -0.145 4.145 15 N -0.394 5.394 16 Si 0.831 3.169 17 H -0.197 1.197 18 H -0.263 1.263 19 H -0.190 1.190 20 C -0.151 4.151 21 C -0.059 4.059 22 C -0.219 4.219 23 C -0.214 4.214 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.786 2.481 -0.366 7.234 hybrid contribution -0.291 0.875 -0.197 0.943 sum -7.077 3.356 -0.563 7.853 Atomic orbital electron populations 1.20770 0.92049 1.02090 1.01852 1.19445 0.94656 0.91999 0.97660 1.19213 0.93499 0.93006 1.14781 1.20494 0.98425 0.91069 0.95006 1.20183 0.91578 0.99045 1.15287 1.17186 0.89687 0.80554 1.01570 1.91413 1.79783 1.48040 1.94118 1.20349 0.99885 0.89917 1.11785 1.19330 0.88598 0.91522 0.90575 1.67109 1.36075 0.96906 1.31730 1.18420 0.88561 0.91585 0.88701 1.20364 0.92796 0.94060 1.34034 0.85460 1.26577 0.97851 0.98815 0.91306 1.69569 1.10147 1.29463 1.30232 0.84517 0.74296 0.78434 0.79697 1.19687 1.26309 1.19038 1.20188 0.94513 0.93988 1.06377 1.19888 0.97828 0.92368 0.95783 1.22228 1.04759 0.98077 0.96848 1.22082 1.04488 0.98435 0.96364 0.91518 0.91318 0.91964 0.86261 0.86638 0.85548 0.89406 0.91687 0.88716 0.94013 0.93663 0.93843 0.93428 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.95 36.00 0.32 -1.29 16 2 C -0.03 -0.65 5.91 -104.36 -0.62 -1.27 16 3 C -0.20 -4.16 5.89 -104.80 -0.62 -4.78 16 4 C -0.03 -0.56 9.34 -39.59 -0.37 -0.93 16 5 C -0.24 -4.28 9.88 -39.82 -0.39 -4.67 16 6 C 0.13 2.58 7.21 -39.83 -0.29 2.30 16 7 F -0.15 -2.91 17.23 2.25 0.04 -2.87 16 8 C -0.20 -4.35 9.98 -39.32 -0.39 -4.75 16 9 C 0.23 5.46 6.75 -83.03 -0.56 4.90 16 10 N -0.60 -15.00 5.08 -7.80 -0.04 -15.04 16 11 C 0.25 6.06 6.06 -85.07 -0.52 5.54 16 12 C -0.38 -9.15 6.64 -37.72 -0.25 -9.40 16 13 H 0.13 2.92 3.49 -52.49 -0.18 2.73 16 14 C 0.08 1.99 5.52 -17.33 -0.10 1.90 16 15 N -0.77 -18.72 13.92 55.56 0.77 -17.95 16 16 Si 1.00 23.70 25.37 -169.99 -4.31 19.39 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.33 -7.59 7.11 56.52 0.40 -7.19 16 19 H -0.26 -6.67 6.74 56.52 0.38 -6.29 16 20 C -0.15 -3.05 4.79 -104.29 -0.50 -3.55 16 21 C -0.04 -0.69 2.79 -91.77 -0.26 -0.95 16 22 C -0.16 -2.79 8.75 37.16 0.33 -2.47 16 23 C -0.16 -2.65 8.81 37.16 0.33 -2.32 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.92 6.43 -51.93 -0.33 0.58 16 26 H 0.06 0.80 6.27 -51.93 -0.33 0.48 16 27 H 0.12 1.71 6.38 -52.48 -0.34 1.38 16 28 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.13 2.75 8.06 -52.48 -0.42 2.33 16 30 H 0.30 6.58 8.29 -40.82 -0.34 6.24 16 31 H 0.06 1.00 5.57 -51.93 -0.29 0.71 16 32 H 0.09 1.85 4.55 -51.93 -0.24 1.61 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.09 1.67 5.03 -51.93 -0.26 1.41 16 LS Contribution 292.63 15.07 4.41 4.41 Total: -1.00 -26.13 292.63 -7.09 -33.22 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.08 Total: 0.57 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.88 Total: -21.73 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.73 Total: -32.99 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.31 Total: 19.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.13 -7.09 -33.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181316815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.326 kcal (2) G-P(sol) polarization free energy of solvation -26.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds