Wall clock time and date at job start Mon Mar 30 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41063 * 120.89647 * 2 1 4 4 C 1.40067 * 121.95182 * 0.49988 * 3 2 1 5 5 C 1.36322 * 119.50679 * 179.69585 * 4 3 2 6 6 C 1.39458 * 121.55944 * 359.80702 * 5 4 3 7 7 F 1.35095 * 119.17932 * 179.97438 * 6 5 4 8 8 C 1.36286 * 121.64211 * 0.02562 * 6 5 4 9 9 C 1.40800 * 119.47608 * 359.97438 * 8 6 5 10 10 N 1.33048 * 121.74069 * 180.02562 * 9 8 6 11 11 C 1.33028 * 120.94275 * 179.97438 * 10 9 8 12 12 C 1.41244 * 119.02052 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00208 * 168.16832 * 12 11 10 14 14 C 1.40157 * 120.00231 * 348.16860 * 12 11 10 15 15 N 1.30664 * 120.00267 * 166.26309 * 14 12 11 16 16 Si 1.86802 * 119.99844 * 346.26852 * 14 12 11 17 17 H 1.48497 * 109.47210 * 85.53472 * 16 14 12 18 18 H 1.48502 * 109.47211 * 205.53483 * 16 14 12 19 19 H 1.48504 * 109.47127 * 325.53287 * 16 14 12 20 20 C 1.35988 * 120.89934 * 180.29188 * 2 1 3 21 21 C 1.50699 * 119.79985 * 359.97302 * 20 2 1 22 22 C 1.53000 * 109.47306 * 123.63231 * 21 20 2 23 23 C 1.53005 * 109.47240 * 243.63383 * 21 20 2 24 24 H 1.09000 * 109.46822 * 263.35895 * 1 2 3 25 25 H 1.09000 * 109.47537 * 143.36099 * 1 2 3 26 26 H 1.09007 * 109.47580 * 23.35435 * 1 2 3 27 27 H 1.08007 * 120.24340 * 359.47965 * 4 3 2 28 28 H 1.08005 * 119.22176 * 179.78404 * 5 4 3 29 29 H 1.08003 * 120.26148 * 180.02562 * 8 6 5 30 30 H 0.96994 * 120.00080 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.46930 * 3.63389 * 21 20 2 32 32 H 1.09000 * 109.46834 * 63.87210 * 22 21 20 33 33 H 1.09007 * 109.46707 * 183.87173 * 22 21 20 34 34 H 1.08995 * 109.46977 * 303.86977 * 22 21 20 35 35 H 1.09003 * 109.46675 * 71.12038 * 23 21 20 36 36 H 1.08999 * 109.47212 * 191.12430 * 23 21 20 37 37 H 1.08994 * 109.47069 * 311.12537 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2313 1.2105 0.0000 4 6 1.5922 2.4568 0.0104 5 6 2.3415 3.5956 0.0162 6 6 3.7354 3.5522 0.0160 7 9 4.4304 4.7106 0.0214 8 6 4.4139 2.3702 0.0096 9 6 3.6958 1.1591 0.0034 10 7 4.3120 -0.0200 -0.0025 11 6 3.6177 -1.1547 -0.0078 12 6 4.3136 -2.3838 -0.0145 13 1 3.7831 -3.3057 0.1730 14 6 5.6925 -2.4071 -0.2645 15 7 6.3843 -3.4861 -0.0108 16 14 6.5412 -0.8955 -0.9602 17 1 6.9135 0.0181 0.1497 18 1 7.7650 -1.3083 -1.6932 19 1 5.6199 -0.1946 -1.8904 20 6 2.2053 -1.1669 -0.0059 21 6 1.4678 -2.4810 -0.0120 22 6 1.9144 -3.3110 -1.2173 23 6 1.7774 -3.2456 1.2766 24 1 -0.3633 -0.1189 1.0208 25 1 -0.3634 -0.8246 -0.6133 26 1 -0.3634 0.9435 -0.4074 27 1 0.5137 2.5150 0.0102 28 1 1.8438 4.5541 0.0206 29 1 5.4939 2.3626 0.0100 30 1 7.3386 -3.5021 -0.1834 31 1 0.3955 -2.2956 -0.0758 32 1 2.9722 -3.5547 -1.1186 33 1 1.3319 -4.2314 -1.2605 34 1 1.7571 -2.7382 -2.1312 35 1 1.2877 -2.7540 2.1173 36 1 1.4102 -4.2682 1.1895 37 1 2.8548 -3.2592 1.4411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181316815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:49 Heat of formation + Delta-G solvation = -29.385784 kcal Electronic energy + Delta-G solvation = -21186.278096 eV Core-core repulsion = 18034.381238 eV Total energy + Delta-G solvation = -3151.896858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.91436 -41.37781 -38.51646 -36.35674 -35.46365 -34.39291 -31.72627 -30.17440 -28.28751 -28.19201 -27.78125 -24.31925 -23.69383 -22.23196 -21.46551 -19.60659 -19.05559 -17.70626 -17.33571 -17.04947 -16.60273 -16.42369 -15.40818 -15.24187 -15.03521 -14.95261 -14.76187 -14.41706 -14.06279 -13.90362 -13.65417 -13.49562 -13.32557 -13.05441 -12.89288 -12.75526 -12.58204 -12.33133 -12.13643 -11.92522 -11.64794 -11.50892 -11.33816 -10.89292 -10.66224 -9.61136 -9.37681 -9.00078 -8.91123 -6.72612 -0.30060 0.14445 1.28517 1.37037 1.45511 1.56921 1.98307 2.36976 2.76070 3.28341 3.59999 3.67558 3.96476 4.05733 4.13784 4.20185 4.26620 4.45259 4.51200 4.53998 4.71209 4.76248 4.87323 4.94127 4.97889 5.01091 5.07319 5.20267 5.20304 5.23562 5.25299 5.30007 5.37980 5.52052 5.59139 5.70034 5.81585 5.89676 6.02485 6.15179 6.48280 6.58363 7.71446 7.87621 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.009274 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.320969 B = 3018.619043 C = 4599.857438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.028 4.028 3 C -0.211 4.211 4 C -0.018 4.018 5 C -0.225 4.225 6 C 0.133 3.867 7 F -0.150 7.150 8 C -0.227 4.227 9 C 0.190 3.810 10 N -0.633 5.633 11 C 0.245 3.755 12 C -0.408 4.408 13 H 0.134 0.866 14 C 0.066 3.934 15 N -0.797 5.797 16 Si 1.030 2.970 17 H -0.295 1.295 18 H -0.322 1.322 19 H -0.292 1.292 20 C -0.171 4.171 21 C -0.034 4.034 22 C -0.158 4.158 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.108 0.892 30 H 0.300 0.700 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 4.137 -0.351 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.032 4.032 3 C -0.215 4.215 4 C -0.036 4.036 5 C -0.245 4.245 6 C 0.112 3.888 7 F -0.128 7.128 8 C -0.249 4.249 9 C 0.061 3.939 10 N -0.356 5.356 11 C 0.116 3.884 12 C -0.439 4.439 13 H 0.151 0.849 14 C -0.158 4.158 15 N -0.420 5.420 16 Si 0.868 3.132 17 H -0.223 1.223 18 H -0.255 1.255 19 H -0.220 1.220 20 C -0.174 4.174 21 C -0.053 4.053 22 C -0.215 4.215 23 C -0.209 4.209 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.186 0.814 28 H 0.174 0.826 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.010 3.904 -0.306 11.686 hybrid contribution 0.883 0.776 -0.204 1.193 sum -10.128 4.680 -0.510 11.168 Atomic orbital electron populations 1.20894 0.87721 1.04159 1.03651 1.20036 0.97532 0.90652 0.94973 1.19618 0.92311 0.95386 1.14205 1.20998 1.00767 0.89292 0.92526 1.20663 0.90271 1.01116 1.12418 1.17370 0.90845 0.79841 1.00699 1.91427 1.79998 1.47462 1.93954 1.20396 0.99431 0.91060 1.13976 1.19733 0.90750 0.91239 0.92200 1.66936 1.37789 0.98084 1.32830 1.18777 0.90609 0.91001 0.87965 1.20458 0.92636 0.94673 1.36133 0.84894 1.26717 0.98545 0.98783 0.91739 1.69560 1.10567 1.29603 1.32285 0.84038 0.73685 0.77519 0.77978 1.22346 1.25486 1.21960 1.20466 0.93286 0.96398 1.07253 1.19946 0.98991 0.90666 0.95694 1.22146 1.03350 0.99277 0.96763 1.22003 1.02383 0.99904 0.96612 0.89460 0.89746 0.89592 0.81355 0.82578 0.87379 0.88876 0.88515 0.91667 0.91291 0.94085 0.92937 0.91237 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 8.95 71.23 0.64 -1.85 16 2 C -0.03 -0.98 5.91 -19.70 -0.12 -1.10 16 3 C -0.21 -8.26 5.89 -19.98 -0.12 -8.38 16 4 C -0.02 -0.54 9.34 22.27 0.21 -0.33 16 5 C -0.22 -6.98 9.88 22.12 0.22 -6.76 16 6 C 0.13 5.05 7.21 22.11 0.16 5.21 16 7 F -0.15 -5.40 17.23 44.97 0.77 -4.63 16 8 C -0.23 -10.25 9.98 22.44 0.22 -10.02 16 9 C 0.19 9.10 6.75 41.75 0.28 9.38 16 10 N -0.63 -33.30 5.08 -178.59 -0.91 -34.21 16 11 C 0.24 12.03 6.06 40.44 0.25 12.28 16 12 C -0.41 -20.45 6.64 23.48 0.16 -20.29 16 13 H 0.13 6.37 3.49 -2.91 -0.01 6.36 16 14 C 0.07 3.42 5.52 85.33 0.47 3.90 16 15 N -0.80 -40.46 13.92 21.86 0.30 -40.16 16 16 Si 1.03 52.10 25.37 68.60 1.74 53.84 16 17 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 18 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 19 H -0.29 -15.81 6.74 99.48 0.67 -15.14 16 20 C -0.17 -6.89 4.79 -19.65 -0.09 -6.98 16 21 C -0.03 -1.11 2.79 -11.54 -0.03 -1.15 16 22 C -0.16 -5.25 8.75 71.98 0.63 -4.62 16 23 C -0.15 -4.89 8.81 71.98 0.63 -4.26 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 1.73 6.43 -2.39 -0.02 1.72 16 26 H 0.09 1.59 6.27 -2.38 -0.01 1.57 16 27 H 0.17 3.52 6.38 -2.91 -0.02 3.50 16 28 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 29 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.30 14.03 8.29 -92.71 -0.77 13.27 16 31 H 0.10 2.52 5.57 -2.39 -0.01 2.51 16 32 H 0.06 2.59 4.55 -2.39 -0.01 2.58 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 37 H 0.05 2.05 5.03 -2.39 -0.01 2.04 16 Total: -1.00 -61.00 292.63 6.49 -54.51 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.08 Total: 5.64 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.51 Total: -34.99 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -0.60 Total: -74.36 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.77 Total: -4.63 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.74 Total: 53.84 kcal Total: -61.00 6.49 -54.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181316815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.120 kcal (2) G-P(sol) polarization free energy of solvation -61.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds