Wall clock time and date at job start Mon Mar 30 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 H 1.08999 * 109.47548 * 305.00280 * 3 2 1 5 5 C 1.50694 * 109.47169 * 184.99722 * 3 2 1 6 6 H 1.08004 * 120.00714 * 240.00116 * 5 3 2 7 7 C 1.37879 * 119.99757 * 60.00507 * 5 3 2 8 8 N 1.31516 * 120.00098 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00036 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46809 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47260 * 120.00167 * 9 7 5 12 12 H 1.48503 * 109.47167 * 240.00056 * 9 7 5 13 13 N 1.46503 * 109.46597 * 65.00340 * 3 2 1 14 14 C 1.34784 * 119.99868 * 274.99558 * 13 3 2 15 15 O 1.21595 * 119.99593 * 0.02562 * 14 13 3 16 16 C 1.47490 * 119.99883 * 180.02562 * 14 13 3 17 17 C 1.39195 * 120.23006 * 0.02562 * 16 14 13 18 18 C 1.38475 * 120.49611 * 180.02562 * 17 16 14 19 19 C 1.37705 * 120.69361 * 359.97438 * 18 17 16 20 20 C 1.39859 * 120.00413 * 0.02562 * 19 18 17 21 21 C 1.46026 * 133.88389 * 179.97438 * 20 19 18 22 22 N 1.30228 * 107.68486 * 179.97438 * 21 20 19 23 23 N 1.39861 * 110.05066 * 0.02562 * 22 21 20 24 24 H 0.96995 * 125.41526 * 180.02562 * 23 22 21 25 25 C 1.36524 * 109.16801 * 359.97438 * 23 22 21 26 26 H 1.09003 * 109.47018 * 59.99704 * 1 2 3 27 27 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46886 * 300.00036 * 1 2 3 29 29 H 1.09004 * 109.46803 * 240.00608 * 2 1 3 30 30 H 1.08996 * 109.47013 * 120.00685 * 2 1 3 31 31 H 0.97003 * 119.99803 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00207 * 95.00476 * 13 3 2 33 33 H 1.08000 * 119.75134 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.65224 * 180.26013 * 18 17 16 35 35 H 1.08000 * 119.99433 * 179.97438 * 19 18 17 36 36 H 1.08001 * 126.15331 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8812 -1.3818 10 1 6.5986 1.5473 -0.1947 11 1 6.4970 -0.5175 -1.4631 12 1 6.3990 1.6168 -2.6102 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3415 2.6319 0.4321 16 6 0.0452 3.3241 2.6272 17 6 0.9307 3.3645 3.7004 18 6 0.5702 3.9820 4.8862 19 6 -0.6686 4.5671 5.0257 20 6 -1.5779 4.5411 3.9634 21 6 -2.9344 5.0495 3.7794 22 7 -3.3125 4.7402 2.5722 23 7 -2.2925 4.0463 1.9133 24 1 -2.3371 3.7110 1.0042 25 6 -1.2236 3.9168 2.7527 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0608 -2.9500 32 1 2.2719 2.1230 1.9978 33 1 1.9061 2.9101 3.6077 34 1 1.2695 4.0091 5.7087 35 1 -0.9382 5.0453 5.9558 36 1 -3.5189 5.5855 4.5126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183871369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:21 Heat of formation + Delta-G solvation = 19.075354 kcal Electronic energy + Delta-G solvation = -20636.858165 eV Core-core repulsion = 17506.982701 eV Total energy + Delta-G solvation = -3129.875464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.33735 -40.55222 -37.91812 -36.95819 -34.36928 -33.48740 -32.74387 -30.88796 -30.43228 -28.83862 -25.47637 -24.63199 -23.28364 -22.76441 -22.00578 -21.19423 -19.49568 -18.37897 -17.80774 -17.26565 -17.03938 -16.41287 -16.12844 -15.77158 -15.67051 -15.31347 -14.91500 -14.62795 -14.46223 -13.89452 -13.54696 -13.21278 -12.95715 -12.84246 -12.76166 -12.69690 -12.58083 -12.16467 -12.08063 -11.90989 -11.62990 -11.29699 -11.06562 -10.76751 -10.54704 -9.81113 -9.65857 -8.97789 -8.17376 -6.34927 -0.33873 0.50659 1.37085 1.44119 1.45399 1.57159 1.75629 2.10923 2.34073 2.59364 2.91704 3.12734 3.57156 3.73671 3.87896 4.02320 4.09793 4.41197 4.44863 4.52211 4.69013 4.69924 4.82029 4.91597 5.03711 5.21069 5.30318 5.39649 5.46367 5.48667 5.52452 5.59173 5.75891 5.88228 5.92877 6.13493 6.24229 6.61648 6.72827 6.93345 7.31397 7.51296 8.88352 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.004727 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.262939 B = 5921.716567 C = 6525.522257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.696 5.696 14 C 0.543 3.457 15 O -0.596 6.596 16 C -0.190 4.190 17 C -0.026 4.026 18 C -0.168 4.168 19 C 0.006 3.994 20 C -0.209 4.209 21 C 0.095 3.905 22 N -0.289 5.289 23 N -0.512 5.512 24 H 0.440 0.560 25 C 0.152 3.848 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.148 0.852 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 7.797 18.598 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.345 5.345 14 C 0.333 3.667 15 O -0.480 6.480 16 C -0.198 4.198 17 C -0.047 4.047 18 C -0.187 4.187 19 C -0.014 4.014 20 C -0.217 4.217 21 C -0.103 4.103 22 N -0.102 5.102 23 N -0.226 5.226 24 H 0.286 0.714 25 C 0.032 3.968 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.166 0.834 34 H 0.191 0.809 35 H 0.198 0.802 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.957 7.730 16.850 19.801 hybrid contribution 1.610 -0.578 -0.827 1.900 sum -5.346 7.152 16.023 18.343 Atomic orbital electron populations 1.21665 0.97247 0.99005 1.00044 1.21781 0.93507 0.99187 1.01408 1.18396 0.93848 0.89089 0.81105 0.98463 1.21601 0.91211 1.38933 1.06812 0.90806 1.25781 1.03393 0.94311 0.94959 1.70061 1.37063 1.38400 1.09891 0.85308 0.79007 0.77837 0.78246 1.18184 1.20427 1.21201 1.46126 1.15056 1.55588 1.17706 1.18618 0.82191 0.78349 0.87577 1.90638 1.52674 1.62492 1.42164 1.19087 0.94589 1.09743 0.96350 1.21623 0.97839 0.93813 0.91403 1.21302 0.98090 1.01251 0.98037 1.21308 0.90557 0.92542 0.97021 1.20333 0.97615 1.08570 0.95156 1.25963 0.92775 0.97606 0.93920 1.76564 1.12334 1.12031 1.09294 1.46291 1.10111 1.50487 1.15695 0.71436 1.18962 0.89157 0.96520 0.92155 0.95539 0.93682 0.94181 0.90869 0.93917 0.92623 0.76095 0.83429 0.80912 0.80236 0.73627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.39 2.24 44.24 0.10 14.49 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -52.41 11.29 21.45 0.24 -52.17 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 13 N -0.70 -29.17 4.97 -449.31 -2.23 -31.41 16 14 C 0.54 22.62 6.33 86.68 0.55 23.17 16 15 O -0.60 -28.86 12.35 -4.01 -0.05 -28.91 16 16 C -0.19 -6.20 5.88 -20.03 -0.12 -6.32 16 17 C -0.03 -0.60 9.52 22.56 0.21 -0.38 16 18 C -0.17 -2.61 9.99 22.20 0.22 -2.39 16 19 C 0.01 0.09 10.09 22.54 0.23 0.32 16 20 C -0.21 -4.74 6.36 -20.25 -0.13 -4.87 16 21 C 0.09 1.90 12.29 86.95 1.07 2.97 16 22 N -0.29 -8.26 12.55 -53.02 -0.67 -8.92 16 23 N -0.51 -17.31 7.17 -51.05 -0.37 -17.68 16 24 H 0.44 16.17 7.60 -213.48 -1.62 14.55 16 25 C 0.15 4.83 6.92 39.60 0.27 5.10 16 26 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 29 H 0.07 4.07 5.95 -2.38 -0.01 4.05 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.40 14.05 6.56 -92.71 -0.61 13.44 16 33 H 0.15 2.92 6.37 -2.91 -0.02 2.90 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.25 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -72.48 300.86 1.72 -70.76 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -1.10 Total: 30.65 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 3.86 Total: -6.05 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.02 Total: -110.18 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -72.48 1.72 -70.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183871369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.835 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds