Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 N 1.46501 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.39139 * 119.99905 * 179.97438 * 4 3 2 6 6 C 1.39029 * 119.96778 * 359.71984 * 5 4 3 7 7 C 1.37722 * 120.15993 * 179.76280 * 6 5 4 8 8 C 1.39945 * 120.10157 * 0.51712 * 7 6 5 9 9 C 1.43208 * 120.02827 * 179.72040 * 8 7 6 10 10 N 9.02670 * 126.21096 * 359.97438 * 2 1 3 11 11 C 1.39633 * 119.94322 * 359.74114 * 8 7 6 12 12 C 1.38491 * 119.83544 * 0.02562 * 11 8 7 13 13 N 1.39516 * 120.05237 * 179.97438 * 12 11 8 14 14 C 1.34774 * 119.99985 * 24.88363 * 13 12 11 15 15 O 1.21786 * 120.00347 * 5.52594 * 14 13 12 16 16 C 1.41729 * 119.99830 * 185.52240 * 14 13 12 17 17 H 1.07993 * 119.99834 * 5.02430 * 16 14 13 18 18 C 1.40145 * 119.99733 * 185.02016 * 16 14 13 19 19 N 1.30626 * 120.00268 * 354.98249 * 18 16 14 20 20 Si 1.86796 * 119.99742 * 174.97936 * 18 16 14 21 21 H 1.48498 * 109.47435 * 95.00318 * 20 18 16 22 22 H 1.48502 * 109.47159 * 215.00377 * 20 18 16 23 23 H 1.48502 * 109.47136 * 335.00204 * 20 18 16 24 24 H 1.09001 * 109.46970 * 60.00351 * 1 2 3 25 25 H 1.09002 * 109.47410 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47269 * 300.00494 * 1 2 3 27 27 H 1.08998 * 109.47269 * 239.99506 * 2 1 3 28 28 H 1.09004 * 109.46728 * 120.00106 * 2 1 3 29 29 H 1.09001 * 109.46894 * 299.99695 * 3 2 1 30 30 H 1.08998 * 109.47435 * 59.99607 * 3 2 1 31 31 H 0.96992 * 119.99881 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.91851 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.94524 * 180.23317 * 7 6 5 34 34 H 1.08001 * 120.08165 * 180.02562 * 11 8 7 35 35 H 0.97002 * 119.99993 * 204.89181 * 13 12 11 36 36 H 0.96998 * 120.00254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2007 2.6474 0.0002 6 6 3.5049 3.8510 -0.0067 7 6 4.1895 5.0461 -0.0022 8 6 5.5889 5.0533 -0.0016 9 6 6.2992 6.2968 -0.0030 10 7 6.8626 7.2832 -0.0033 11 6 6.2921 3.8469 -0.0001 12 6 5.6012 2.6467 0.0002 13 7 6.2992 1.4387 0.0012 14 6 7.5529 1.3852 0.4929 15 8 8.0397 2.3653 1.0275 16 6 8.3048 0.1884 0.3879 17 1 7.9053 -0.6542 -0.1567 18 6 9.5668 0.0987 0.9908 19 7 10.0925 1.1476 1.5651 20 14 10.4971 -1.5211 0.9733 21 1 11.4372 -1.5396 -0.1761 22 1 11.2598 -1.6676 2.2390 23 1 9.5338 -2.6438 0.8430 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.9899 0.6024 0.0013 32 1 2.4250 3.8489 -0.0113 33 1 3.6455 5.9790 -0.0038 34 1 7.3721 3.8499 0.0008 35 1 5.8822 0.6373 -0.3521 36 1 10.9657 1.0853 1.9826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187071459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = -8.560118 kcal Electronic energy + Delta-G solvation = -19960.895682 eV Core-core repulsion = 16829.821853 eV Total energy + Delta-G solvation = -3131.073828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18805 -39.13413 -37.98118 -36.74220 -35.32838 -34.53593 -33.74368 -31.02750 -30.24048 -28.30800 -26.75208 -24.19136 -23.46670 -22.46808 -21.53281 -19.96828 -19.12324 -18.11213 -17.52239 -16.98451 -16.49679 -16.31430 -15.82956 -15.41265 -15.08795 -14.83230 -14.58721 -14.53733 -14.40118 -14.04153 -13.77797 -13.53391 -13.22522 -13.09969 -13.01977 -12.76134 -12.67761 -12.58084 -12.20120 -12.01945 -11.84283 -11.72402 -11.14196 -10.88397 -10.74762 -9.77954 -9.11608 -8.36132 -7.99583 -6.96246 0.11465 0.63345 1.40273 1.40827 1.57453 1.72168 2.04576 2.21181 2.43499 2.46597 2.94568 3.11458 3.21698 3.69416 3.98092 4.06005 4.19801 4.32721 4.45206 4.57247 4.68637 4.82612 4.83366 4.92472 5.06635 5.18244 5.24226 5.25394 5.30949 5.35189 5.47672 5.59895 5.82437 5.90926 6.17963 6.20467 6.54490 6.58920 6.75478 6.76903 7.43321 8.41556 8.60203 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.006071 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.177211 B = 4610.839111 C = 6953.637278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.121 3.879 4 N -0.738 5.738 5 C 0.212 3.788 6 C -0.175 4.175 7 C -0.037 4.037 8 C -0.096 4.096 9 C 0.289 3.711 10 N -0.489 5.489 11 C -0.074 4.074 12 C 0.087 3.913 13 N -0.686 5.686 14 C 0.531 3.469 15 O -0.612 6.612 16 C -0.564 4.564 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.803 5.803 20 Si 0.998 3.002 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.244 1.244 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.399 0.601 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.401 0.599 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 -5.752 -4.312 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.002 4.002 4 N -0.367 5.367 5 C 0.103 3.897 6 C -0.198 4.198 7 C -0.060 4.060 8 C -0.102 4.102 9 C -0.023 4.023 10 N -0.166 5.166 11 C -0.099 4.099 12 C -0.013 4.013 13 N -0.331 5.331 14 C 0.340 3.660 15 O -0.499 6.499 16 C -0.599 4.599 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.431 5.431 20 Si 0.817 3.183 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.167 1.167 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.126 0.874 35 H 0.237 0.763 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.736 -3.523 -3.848 19.449 hybrid contribution 1.034 -1.500 0.060 1.823 sum -17.702 -5.023 -3.788 18.787 Atomic orbital electron populations 1.21657 0.93509 1.02536 1.02648 1.21691 0.97577 0.95228 1.02726 1.21624 0.77880 0.98437 1.02247 1.44650 1.06550 1.04503 1.81011 1.17888 0.87925 0.88767 0.95138 1.20596 1.00880 0.88638 1.09726 1.21019 0.89798 0.99668 0.95465 1.15767 0.93350 0.84836 1.16281 1.26054 0.92182 0.92590 0.91511 1.81122 1.09396 1.13300 1.12822 1.21059 1.00179 0.90583 0.98091 1.17432 0.89821 0.87007 1.07050 1.43367 1.16421 1.08666 1.64674 1.17349 0.80220 0.89800 0.78598 1.90596 1.70743 1.39168 1.49421 1.20557 1.02817 1.00334 1.36238 0.88974 1.26988 0.98026 1.01549 0.91927 1.70170 1.15310 1.32135 1.25473 0.85000 0.78151 0.76732 0.78435 1.18890 1.19943 1.16653 0.91718 0.91970 0.92098 0.91204 0.91887 0.90609 0.91419 0.76646 0.81422 0.82340 0.87358 0.76319 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.59 6.05 30.59 0.19 -1.40 16 3 C 0.12 1.71 4.90 86.38 0.42 2.13 16 4 N -0.74 -15.95 5.68 -338.80 -1.93 -17.88 16 5 C 0.21 5.99 6.68 38.61 0.26 6.25 16 6 C -0.18 -3.99 9.28 22.34 0.21 -3.78 16 7 C -0.04 -0.95 9.74 22.56 0.22 -0.73 16 8 C -0.10 -3.41 5.74 -21.28 -0.12 -3.54 16 9 C 0.29 11.24 15.32 88.33 1.35 12.59 16 10 N -0.49 -20.44 18.54 19.01 0.35 -20.09 16 11 C -0.07 -3.22 8.41 22.67 0.19 -3.03 16 12 C 0.09 3.40 6.45 38.42 0.25 3.65 16 13 N -0.69 -29.08 5.17 -311.09 -1.61 -30.69 16 14 C 0.53 29.22 7.37 85.10 0.63 29.85 16 15 O -0.61 -39.14 12.05 -4.62 -0.06 -39.20 16 16 C -0.56 -30.00 9.31 23.60 0.22 -29.78 16 17 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 18 C 0.03 1.77 5.49 85.34 0.47 2.24 16 19 N -0.80 -47.47 11.75 21.85 0.26 -47.22 16 20 Si 1.00 38.75 29.56 68.60 2.03 40.78 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.08 0.89 7.92 -2.39 -0.02 0.87 16 30 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 31 H 0.40 8.72 6.87 -92.71 -0.64 8.08 16 32 H 0.17 2.44 6.69 -2.91 -0.02 2.42 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.11 5.87 5.77 -2.91 -0.02 5.85 16 35 H 0.40 13.92 7.27 -92.71 -0.67 13.24 16 36 H 0.28 14.89 8.29 -92.71 -0.77 14.12 16 Total: -1.00 -75.41 316.09 3.86 -71.55 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.18 Total: 28.88 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.99 Total: 13.86 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -2.92 Total: -115.87 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.06 Total: -39.20 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -75.41 3.86 -71.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187071459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.991 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds