Wall clock time and date at job start Mon Mar 30 2020 01:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39551 * 120.11380 * 2 1 4 4 C 1.43193 * 120.11653 * 0.02562 * 3 2 1 5 5 N 3.48397 * 80.50355 * 0.02562 * 2 1 3 6 6 C 1.39636 * 119.76340 * 180.02562 * 3 2 1 7 7 C 1.38011 * 119.98967 * 0.02562 * 6 3 2 8 8 C 1.38224 * 120.22732 * 359.73627 * 7 6 3 9 9 C 1.38581 * 120.10963 * 180.02562 * 2 1 3 10 10 N 1.39974 * 119.99419 * 359.95687 * 9 2 1 11 11 C 1.34777 * 119.99968 * 155.43147 * 10 9 2 12 12 O 1.21591 * 119.99646 * 354.37998 * 11 10 9 13 13 N 1.34767 * 119.99986 * 174.37481 * 11 10 9 14 14 C 1.46508 * 119.99915 * 179.72355 * 13 11 10 15 15 H 1.08997 * 109.46958 * 325.27366 * 14 13 11 16 16 C 1.52997 * 109.46946 * 85.27938 * 14 13 11 17 17 C 1.50703 * 109.47114 * 205.27797 * 14 13 11 18 18 H 1.08002 * 119.99789 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00123 * 179.97438 * 17 14 13 20 20 N 1.31507 * 119.99946 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99633 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.46881 * 89.99773 * 21 19 17 23 23 H 1.48497 * 109.47063 * 209.99715 * 21 19 17 24 24 H 1.48497 * 109.47284 * 329.99821 * 21 19 17 25 25 H 1.09004 * 109.46877 * 269.97964 * 1 2 3 26 26 H 1.09002 * 109.46983 * 29.97084 * 1 2 3 27 27 H 1.08991 * 109.47374 * 149.97431 * 1 2 3 28 28 H 1.07994 * 120.00604 * 180.02562 * 6 3 2 29 29 H 1.07995 * 119.89147 * 179.97438 * 7 6 3 30 30 H 1.07994 * 119.88793 * 180.27634 * 8 7 6 31 31 H 0.97003 * 119.99703 * 335.42195 * 10 9 2 32 32 H 0.96999 * 120.00350 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47268 * 299.99573 * 16 14 13 34 34 H 1.08992 * 109.47336 * 60.00056 * 16 14 13 35 35 H 1.09002 * 109.47087 * 180.02562 * 16 14 13 36 36 H 0.97008 * 119.99707 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2072 0.0000 4 6 1.4962 2.4501 0.0006 5 7 0.9322 3.4362 0.0015 6 6 3.6035 1.1986 -0.0005 7 6 4.2860 -0.0009 -0.0016 8 6 3.5922 -1.1964 0.0034 9 6 2.2022 -1.1988 -0.0005 10 7 1.5046 -2.4123 -0.0002 11 6 2.0886 -3.5256 -0.4859 12 8 3.1802 -3.4570 -1.0172 13 7 1.4629 -4.7147 -0.3827 14 6 2.0951 -5.9239 -0.9162 15 1 2.6552 -5.6737 -1.8171 16 6 3.0466 -6.5062 0.1309 17 6 1.0336 -6.9400 -1.2506 18 1 -0.0078 -6.7080 -1.0830 19 6 1.3918 -8.1652 -1.7716 20 7 0.4655 -9.0521 -2.0630 21 14 3.1930 -8.5660 -2.0621 22 1 3.7627 -9.1958 -0.8439 23 1 3.3130 -9.5044 -3.2067 24 1 3.9353 -7.3164 -2.3666 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 4.1493 2.1305 -0.0001 29 1 5.3660 -0.0057 -0.0024 30 1 4.1318 -2.1318 0.0070 31 1 0.6008 -2.4520 0.3498 32 1 0.5919 -4.7693 0.0408 33 1 3.8144 -5.7713 0.3728 34 1 2.4864 -6.7563 1.0318 35 1 3.5173 -7.4056 -0.2661 36 1 0.7176 -9.9143 -2.4291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187616278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:21 Heat of formation + Delta-G solvation = 11.413742 kcal Electronic energy + Delta-G solvation = -20016.498886 eV Core-core repulsion = 16886.291189 eV Total energy + Delta-G solvation = -3130.207696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83806 -40.14289 -37.71221 -36.89647 -35.79993 -34.39930 -33.64338 -32.07653 -30.40754 -28.00547 -27.18115 -25.10916 -23.62418 -22.24724 -21.72536 -20.26226 -19.54055 -18.40777 -17.62995 -16.91315 -16.65955 -16.63335 -16.16852 -15.68447 -15.37861 -15.01957 -14.84773 -14.54773 -14.19954 -14.08842 -14.04846 -13.83726 -13.61546 -13.48521 -13.30613 -12.95910 -12.73408 -12.59007 -12.25265 -12.10621 -11.60608 -11.48643 -11.24112 -10.98609 -10.84337 -9.95042 -9.74427 -8.97273 -8.35305 -6.41430 -0.19322 0.31572 1.31848 1.40318 1.49026 1.51187 1.74732 1.88196 2.23021 2.29595 2.84591 2.93204 3.01782 3.32596 3.76157 3.93448 4.14459 4.38230 4.47478 4.52257 4.61051 4.65502 4.69463 4.73897 4.76802 5.02498 5.13955 5.22738 5.27689 5.36850 5.43562 5.45126 5.53836 5.66166 5.96024 5.98667 6.28716 6.43058 6.61595 7.11213 7.24605 7.57922 8.79836 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037628 B = 0.003829 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.957527 B = 7309.935623 C = 7840.754618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.024 4.024 4 C 0.286 3.714 5 N -0.459 5.459 6 C -0.079 4.079 7 C -0.099 4.099 8 C -0.115 4.115 9 C 0.160 3.840 10 N -0.671 5.671 11 C 0.698 3.302 12 O -0.612 6.612 13 N -0.709 5.709 14 C 0.261 3.739 15 H 0.027 0.973 16 C -0.156 4.156 17 C -0.534 4.534 18 H 0.057 0.943 19 C 0.029 3.971 20 N -0.935 5.935 21 Si 0.939 3.061 22 H -0.260 1.260 23 H -0.296 1.296 24 H -0.258 1.258 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.422 0.578 32 H 0.406 0.594 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 17.199 7.472 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.028 4.028 4 C -0.029 4.029 5 N -0.135 5.135 6 C -0.100 4.100 7 C -0.117 4.117 8 C -0.136 4.136 9 C 0.064 3.936 10 N -0.319 5.319 11 C 0.398 3.602 12 O -0.493 6.493 13 N -0.361 5.361 14 C 0.155 3.845 15 H 0.045 0.955 16 C -0.214 4.214 17 C -0.572 4.572 18 H 0.076 0.924 19 C -0.171 4.171 20 N -0.574 5.574 21 Si 0.766 3.234 22 H -0.185 1.185 23 H -0.223 1.223 24 H -0.182 1.182 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.152 0.848 31 H 0.260 0.740 32 H 0.242 0.758 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.015 18.480 6.938 20.366 hybrid contribution -0.188 -1.240 -0.086 1.257 sum 4.826 17.239 6.852 19.169 Atomic orbital electron populations 1.20893 0.89239 1.03733 1.04147 1.19558 0.96884 0.89689 1.01499 1.15614 0.92713 0.85101 1.09415 1.25624 0.92369 0.92421 0.92438 1.81276 1.09549 1.12178 1.10538 1.21362 0.91123 0.99930 0.97582 1.21212 1.01607 0.90214 0.98709 1.21801 0.92888 1.00716 0.98199 1.17279 0.91454 0.83870 1.01018 1.42494 1.19299 1.05562 1.64573 1.16092 0.84114 0.80890 0.79056 1.90829 1.22144 1.85743 1.50582 1.45174 1.23272 1.05416 1.62248 1.18664 0.91878 0.81502 0.92416 0.95522 1.22365 0.99197 0.99374 1.00510 1.21267 0.93820 0.98950 1.43140 0.92437 1.25551 1.01348 0.95870 0.94351 1.69976 1.35111 1.07635 1.44672 0.86007 0.81061 0.78648 0.77674 1.18545 1.22349 1.18223 0.88591 0.91472 0.90168 0.82415 0.82322 0.84771 0.73960 0.75843 0.93145 0.91699 0.94125 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.04 71.24 0.64 -1.22 16 2 C -0.07 -1.33 5.93 -19.46 -0.12 -1.45 16 3 C -0.02 -0.43 5.73 -21.38 -0.12 -0.56 16 4 C 0.29 5.75 13.80 88.33 1.22 6.97 16 5 N -0.46 -11.17 18.54 19.00 0.35 -10.82 16 6 C -0.08 -1.16 9.75 22.55 0.22 -0.94 16 7 C -0.10 -1.66 10.02 22.21 0.22 -1.44 16 8 C -0.11 -2.72 8.71 22.45 0.20 -2.53 16 9 C 0.16 3.67 6.41 38.10 0.24 3.91 16 10 N -0.67 -16.09 4.99 -317.28 -1.58 -17.67 16 11 C 0.70 23.36 8.33 179.06 1.49 24.85 16 12 O -0.61 -24.65 13.16 -4.00 -0.05 -24.70 16 13 N -0.71 -25.11 5.07 -461.41 -2.34 -27.45 16 14 C 0.26 11.55 2.15 44.24 0.10 11.64 16 15 H 0.03 1.33 6.63 -2.39 -0.02 1.31 16 16 C -0.16 -6.32 8.97 71.98 0.65 -5.67 16 17 C -0.53 -27.74 9.31 25.60 0.24 -27.50 16 18 H 0.06 3.18 7.98 -2.91 -0.02 3.16 16 19 C 0.03 1.56 5.45 84.66 0.46 2.02 16 20 N -0.93 -54.69 13.96 21.45 0.30 -54.39 16 21 Si 0.94 43.02 24.37 68.60 1.67 44.70 16 22 H -0.26 -11.16 6.87 99.48 0.68 -10.48 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.26 -11.60 6.53 99.48 0.65 -10.95 16 25 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.07 7.09 -2.39 -0.02 1.06 16 27 H 0.08 1.14 6.98 -2.39 -0.02 1.12 16 28 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.13 3.91 5.77 -2.91 -0.02 3.89 16 31 H 0.42 7.31 7.40 -92.71 -0.69 6.63 16 32 H 0.41 12.24 8.56 -92.71 -0.79 11.45 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 36 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -66.84 306.73 3.37 -63.47 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.41 Total: 18.78 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.44 Total: 8.08 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.27 Total: -110.33 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.67 Total: 44.70 kcal Total: -66.84 3.37 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187616278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.881 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds