Wall clock time and date at job start Mon Mar 30 2020 01:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46706 * 2 1 4 4 C 1.38065 * 120.48685 * 264.99295 * 3 2 1 5 5 N 1.31874 * 120.87624 * 179.97438 * 4 3 2 6 6 C 1.31897 * 121.99845 * 0.02562 * 5 4 3 7 7 C 1.38019 * 120.87879 * 359.97438 * 6 5 4 8 8 C 1.39683 * 120.49019 * 84.95538 * 3 2 1 9 9 C 1.48492 * 120.90016 * 0.03879 * 8 3 2 10 10 N 1.30716 * 126.41038 * 0.02562 * 9 8 3 11 11 O 1.21292 * 110.10397 * 180.02562 * 10 9 8 12 12 C 1.33665 * 110.01878 * 359.97438 * 11 10 9 13 13 C 1.50707 * 126.43987 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47059 * 269.97701 * 13 12 11 15 15 C 1.50697 * 109.47062 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99890 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00314 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00244 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46980 * 90.00274 * 19 17 15 21 21 H 1.48491 * 109.47395 * 210.00333 * 19 17 15 22 22 H 1.48506 * 109.47050 * 330.00848 * 19 17 15 23 23 N 1.30971 * 107.11695 * 359.73545 * 12 11 10 24 24 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47911 * 300.00243 * 1 2 3 26 26 H 1.09001 * 109.47494 * 60.00211 * 1 2 3 27 27 H 1.08991 * 109.47464 * 239.99941 * 2 1 3 28 28 H 1.09003 * 109.46890 * 119.99348 * 2 1 3 29 29 H 1.07996 * 119.56013 * 0.26268 * 4 3 2 30 30 H 1.07997 * 119.55979 * 179.97438 * 6 5 4 31 31 H 1.08003 * 120.48471 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46807 * 29.97767 * 13 12 11 33 33 H 1.09000 * 109.46954 * 149.97645 * 13 12 11 34 34 H 1.08992 * 109.47506 * 300.00027 * 14 13 12 35 35 H 1.09008 * 109.47122 * 60.00400 * 14 13 12 36 36 H 0.96999 * 120.00542 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3636 2.0467 -1.1852 5 7 2.8033 3.2899 -1.1942 6 6 2.9471 3.9884 -0.0847 7 6 2.6387 3.4389 1.1433 8 6 2.1686 2.1244 1.1990 9 6 1.8244 1.4919 2.4977 10 7 1.3793 0.2756 2.6745 11 8 1.1948 0.0667 3.8550 12 6 1.5112 1.1529 4.5668 13 6 1.4228 1.2990 6.0642 14 6 0.0379 1.8266 6.4442 15 6 -0.0503 1.9733 7.9414 16 1 0.7966 1.7154 8.5601 17 6 -1.2124 2.4356 8.5216 18 7 -1.2892 2.5640 9.8282 19 14 -2.6775 2.8809 7.4517 20 1 -3.5384 1.6848 7.2686 21 1 -3.4604 3.9585 8.1080 22 1 -2.1983 3.3531 6.1278 23 7 1.9185 2.0643 3.7189 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2568 1.5125 -2.1177 30 1 3.3109 5.0039 -0.1377 31 1 2.7585 4.0168 2.0478 32 1 1.5834 0.3286 6.5339 33 1 2.1849 1.9990 6.4066 34 1 -0.1227 2.7969 5.9745 35 1 -0.7242 1.1265 6.1018 36 1 -2.1067 2.8896 10.2364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234133951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:45 Heat of formation + Delta-G solvation = 72.391403 kcal Electronic energy + Delta-G solvation = -20081.305175 eV Core-core repulsion = 16953.741668 eV Total energy + Delta-G solvation = -3127.563507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.65514 -41.38579 -37.29283 -36.61920 -35.66218 -34.36563 -33.13068 -32.05486 -30.78826 -28.08050 -26.54286 -25.48190 -24.22183 -23.50271 -22.68988 -21.72217 -19.40575 -19.06470 -18.72680 -17.85233 -17.23225 -16.40801 -16.37689 -15.74138 -15.50685 -15.32506 -14.88947 -14.77897 -14.72577 -14.60489 -13.70908 -13.64546 -13.56867 -13.23384 -13.10905 -12.92057 -12.59226 -12.32452 -12.26846 -12.02883 -11.82626 -11.77211 -11.46933 -11.32416 -10.78015 -10.63805 -10.38610 -10.03674 -8.30288 -6.34699 -0.57717 0.01466 0.22376 1.33475 1.34560 1.37622 1.46488 1.71875 2.28425 2.33773 2.70692 2.79324 3.05540 3.40981 3.64562 3.70478 3.79917 3.96975 4.25086 4.28910 4.33066 4.37058 4.38157 4.41789 4.63165 4.67501 4.78197 4.82935 4.87689 4.92539 5.10382 5.22776 5.26338 5.28284 5.35246 5.55776 5.56833 6.22324 6.73175 6.83157 6.97697 7.30023 8.85432 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.004076 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.764263 B = 6867.938007 C = 7048.047647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.105 4.105 4 C 0.104 3.896 5 N -0.486 5.486 6 C 0.095 3.905 7 C -0.134 4.134 8 C 0.002 3.998 9 C 0.196 3.804 10 N -0.371 5.371 11 O 0.071 5.929 12 C 0.215 3.785 13 C -0.010 4.010 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.054 0.946 17 C 0.016 3.984 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.257 1.257 23 N -0.498 5.498 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.192 0.808 30 H 0.192 0.808 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.019 0.981 35 H 0.024 0.976 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -2.818 -22.229 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.054 4.054 5 N -0.195 5.195 6 C -0.061 4.061 7 C -0.156 4.156 8 C -0.008 4.008 9 C -0.073 4.073 10 N -0.081 5.081 11 O 0.013 5.987 12 C -0.004 4.004 13 C -0.048 4.048 14 C -0.042 4.042 15 C -0.565 4.565 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.182 1.182 23 N -0.231 5.231 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.209 0.791 30 H 0.209 0.791 31 H 0.166 0.834 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.940 -2.549 -23.624 24.753 hybrid contribution -1.054 -0.046 1.443 1.788 sum 5.886 -2.595 -22.180 23.094 Atomic orbital electron populations 1.21587 0.94162 1.02515 1.00828 1.20719 0.96691 0.90569 1.04521 1.21240 0.98606 0.98616 0.92464 1.23090 0.94014 0.90590 0.97661 1.67702 1.11909 1.07999 1.31844 1.23159 0.95698 1.01050 0.86163 1.22392 0.97988 0.93790 1.01418 1.17873 1.00840 0.94765 0.87278 1.24088 1.00529 0.88580 0.94132 1.74943 1.19766 1.17896 0.95477 1.85297 1.62212 1.38479 1.12684 1.29374 0.90769 0.80625 0.99672 1.20366 1.00908 1.05655 0.77918 1.19481 0.92708 0.96541 0.95512 1.21248 1.00217 1.43816 0.91228 0.92799 1.25771 1.01549 0.94991 0.95874 1.70012 1.28961 1.47986 1.11306 0.85868 0.79686 0.78714 0.79657 1.19049 1.20913 1.18157 1.72021 1.22622 1.29603 0.98857 0.90918 0.95707 0.91570 0.87646 0.90643 0.79132 0.79095 0.83437 0.86432 0.86822 0.96270 0.95735 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.59 71.98 0.69 -1.97 16 2 C -0.09 -1.70 5.36 29.85 0.16 -1.54 16 3 C -0.11 -2.32 5.18 -19.55 -0.10 -2.42 16 4 C 0.10 1.93 10.84 84.65 0.92 2.85 16 5 N -0.49 -10.13 10.34 -196.08 -2.03 -12.16 16 6 C 0.09 1.84 11.17 84.63 0.95 2.79 16 7 C -0.13 -3.14 9.80 22.58 0.22 -2.92 16 8 C 0.00 0.05 5.91 -19.84 -0.12 -0.06 16 9 C 0.20 6.21 7.68 137.34 1.05 7.27 16 10 N -0.37 -11.63 7.98 -59.22 -0.47 -12.10 16 11 O 0.07 2.28 11.29 74.64 0.84 3.12 16 12 C 0.22 7.16 7.75 88.36 0.68 7.84 16 13 C -0.01 -0.33 5.78 29.85 0.17 -0.16 16 14 C 0.00 -0.16 4.02 29.85 0.12 -0.04 16 15 C -0.53 -27.95 9.66 25.60 0.25 -27.70 16 16 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 17 C 0.02 0.91 5.47 84.65 0.46 1.37 16 18 N -0.94 -56.46 13.96 21.45 0.30 -56.16 16 19 Si 0.94 42.92 27.47 68.60 1.88 44.81 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.26 -11.32 6.54 99.48 0.65 -10.67 16 23 N -0.50 -17.01 11.36 -302.59 -3.44 -20.45 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.02 0.63 7.32 -2.39 -0.02 0.61 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.11 1.39 8.06 -2.39 -0.02 1.37 16 28 H 0.08 1.79 5.71 -2.39 -0.01 1.78 16 29 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.15 3.40 7.97 -2.91 -0.02 3.37 16 32 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 35 H 0.02 1.03 7.57 -2.38 -0.02 1.02 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.60 310.17 3.59 -61.01 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.04 Total: 6.63 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 5.46 Total: -14.70 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.64 Total: -100.87 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.84 Total: 3.12 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Total: -64.60 3.59 -61.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234133951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.405 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds